Wall clock time and date at job start Tue Mar 31 2020 05:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47236 * 120.00477 * 2 1 3 5 5 N 1.46505 * 109.47212 * 64.99775 * 4 2 1 6 6 C 1.38237 * 119.50009 * 90.00215 * 5 4 2 7 7 N 1.31503 * 131.76507 * 359.97185 * 6 5 4 8 8 N 1.28509 * 110.12400 * 180.02562 * 7 6 5 9 9 C 1.31344 * 110.04265 * 359.97438 * 8 7 6 10 10 S 1.76205 * 126.54118 * 180.02562 * 9 8 7 11 11 C 1.76199 * 99.99728 * 359.97438 * 10 9 8 12 12 H 1.07997 * 120.00426 * 0.02562 * 11 10 9 13 13 C 1.38563 * 119.99678 * 179.97438 * 11 10 9 14 14 N 1.31706 * 120.00241 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99747 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46861 * 90.00490 * 15 13 11 17 17 H 1.48499 * 109.47025 * 209.99965 * 15 13 11 18 18 H 1.48500 * 109.47232 * 330.00512 * 15 13 11 19 19 N 1.36790 * 121.35004 * 179.97438 * 6 5 4 20 20 C 1.38869 * 120.94501 * 359.97438 * 19 6 5 21 21 C 1.38674 * 121.28290 * 180.02562 * 20 19 6 22 22 C 1.38068 * 119.86655 * 180.02562 * 21 20 19 23 23 C 1.38607 * 120.58487 * 359.89649 * 22 21 20 24 24 C 1.37905 * 120.36182 * 0.08286 * 23 22 21 25 25 C 1.39347 * 119.61480 * 359.96575 * 24 23 22 26 26 C 1.34924 * 119.50201 * 269.72728 * 5 4 2 27 27 O 1.21627 * 120.54707 * 0.02562 * 26 5 4 28 28 H 1.09004 * 109.46741 * 299.99412 * 1 2 3 29 29 H 1.09000 * 109.47403 * 59.99547 * 1 2 3 30 30 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46741 * 240.00588 * 2 1 3 32 32 H 1.09002 * 109.47016 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47400 * 300.00455 * 3 2 1 34 34 H 1.09004 * 109.46881 * 60.00674 * 3 2 1 35 35 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 36 36 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 37 37 H 0.96999 * 120.00115 * 179.97438 * 14 13 11 38 38 H 1.07989 * 120.06411 * 359.95488 * 21 20 19 39 39 H 1.08003 * 119.70529 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.81679 * 180.02562 * 23 22 21 41 41 H 1.07994 * 120.19311 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 -2.1330 1.1904 6 6 2.5004 -3.0475 0.5941 7 7 3.6761 -2.9081 0.0216 8 7 4.1001 -4.0455 -0.4001 9 6 3.2233 -4.9835 -0.1236 10 16 3.3652 -6.6978 -0.5055 11 6 4.9349 -6.7040 -1.3057 12 1 5.4867 -5.7826 -1.4197 13 6 5.4620 -7.8913 -1.7879 14 7 4.7895 -9.0151 -1.6484 15 14 7.1266 -7.8980 -2.6357 16 1 8.1943 -8.1220 -1.6282 17 1 7.1632 -8.9858 -3.6459 18 1 7.3456 -6.5915 -3.3068 19 7 2.1767 -4.3744 0.5188 20 6 0.9807 -4.8484 1.0417 21 6 0.6457 -6.1921 0.9698 22 6 -0.5515 -6.6315 1.4989 23 6 -1.4238 -5.7411 2.1051 24 6 -1.1073 -4.4013 2.1863 25 6 0.0975 -3.9449 1.6552 26 6 0.4758 -2.5217 1.7241 27 8 -0.2620 -1.7108 2.2509 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6055 -0.2619 2.1369 36 1 3.1264 -0.6444 1.2950 37 1 5.1583 -9.8462 -1.9863 38 1 1.3193 -6.8932 0.4998 39 1 -0.8100 -7.6786 1.4411 40 1 -2.3568 -6.0984 2.5152 41 1 -1.7891 -3.7098 2.6588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032985489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:34 Heat of formation + Delta-G solvation = 74.317650 kcal Electronic energy + Delta-G solvation = -27695.627908 eV Core-core repulsion = 23896.120606 eV Total energy + Delta-G solvation = -3799.507302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.105 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.00717 -40.49592 -38.95799 -36.69465 -35.40938 -34.05101 -32.81200 -31.49296 -29.86828 -29.50584 -27.28778 -27.03698 -25.85143 -24.25473 -23.83841 -22.77325 -21.37594 -20.49004 -19.53333 -18.97681 -18.17853 -16.92311 -16.75764 -16.70163 -15.82870 -15.39468 -15.17076 -15.06625 -14.95945 -14.56798 -14.31535 -14.04963 -13.80016 -13.19511 -13.04122 -12.91353 -12.42183 -12.29446 -12.03150 -11.86889 -11.77306 -11.49331 -11.24190 -11.16772 -11.14956 -11.05031 -10.93720 -10.81568 -10.60449 -10.52874 -10.30331 -10.06189 -9.51426 -9.30507 -9.02371 -8.74768 -8.41504 -6.91087 -6.61874 -4.37748 0.48469 0.86346 1.84971 2.00499 2.40948 2.59223 2.92496 3.11839 3.16371 3.24355 3.27604 3.69549 3.84555 4.02331 4.30427 4.63519 4.68986 4.73377 4.81100 4.83258 4.85422 5.02712 5.05517 5.12143 5.30595 5.31469 5.45942 5.56820 5.60886 5.65274 5.71832 5.79106 5.81977 5.87532 6.00389 6.05825 6.20458 6.24230 6.26837 6.29647 6.37065 6.49631 6.74033 7.20668 7.43043 7.71159 8.21890 8.90091 9.06477 10.45697 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.004067 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.566275 B = 6883.098558 C = 8953.484746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.120 3.880 5 N -0.500 5.500 6 C 0.367 3.633 7 N -0.281 5.281 8 N -0.276 5.276 9 C 0.174 3.826 10 S 0.166 5.834 11 C -0.541 4.541 12 H 0.108 0.892 13 C 0.079 3.921 14 N -0.875 5.875 15 Si 0.934 3.066 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.264 1.264 19 N -0.437 5.437 20 C 0.188 3.812 21 C -0.139 4.139 22 C -0.054 4.054 23 C -0.144 4.144 24 C -0.029 4.029 25 C -0.171 4.171 26 C 0.569 3.431 27 O -0.509 6.509 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.277 0.723 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.899 8.676 6.457 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.199 4.199 4 C -0.001 4.001 5 N -0.229 5.229 6 C 0.010 3.990 7 N -0.126 5.126 8 N -0.120 5.120 9 C -0.194 4.194 10 S 0.401 5.599 11 C -0.689 4.689 12 H 0.126 0.874 13 C -0.131 4.131 14 N -0.510 5.510 15 Si 0.759 3.241 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.189 1.189 19 N -0.131 5.131 20 C 0.089 3.911 21 C -0.161 4.161 22 C -0.073 4.073 23 C -0.163 4.163 24 C -0.049 4.049 25 C -0.177 4.177 26 C 0.360 3.640 27 O -0.383 6.383 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.171 0.829 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.598 8.669 6.310 15.795 hybrid contribution 0.753 0.233 -0.352 0.863 sum -10.845 8.902 5.959 15.243 Atomic orbital electron populations 1.21842 0.94507 1.01745 1.01671 1.21491 0.96671 0.96706 0.98302 1.21727 1.01342 0.94766 1.02024 1.21902 1.01862 0.76551 0.99779 1.44293 1.16809 1.08139 1.53621 1.21302 0.93811 0.79722 1.04172 1.74400 1.04665 1.18732 1.14801 1.74795 1.22066 0.93176 1.21928 1.28260 0.85474 1.05817 0.99817 1.83261 1.27093 0.83382 1.66142 1.23355 1.03532 0.98974 1.43057 0.87392 1.25079 0.99265 0.93987 0.94799 1.69951 1.38332 0.99097 1.43595 0.85884 0.80723 0.78546 0.78930 1.19772 1.20541 1.18863 1.43533 1.15736 1.07668 1.46141 1.17899 0.84060 0.94260 0.94877 1.21248 0.99119 0.93087 1.02597 1.21331 0.91906 1.00658 0.93404 1.21221 1.00757 0.92724 1.01624 1.20992 0.93279 0.96100 0.94488 1.19490 0.97938 0.92105 1.08213 1.17965 0.79872 0.88294 0.77904 1.90811 1.49587 1.54175 1.43777 0.91941 0.92999 0.93320 0.90466 0.92131 0.92233 0.92452 0.88460 0.88517 0.91353 0.82885 0.84024 0.84451 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.94 37.16 0.30 -1.43 16 2 C -0.11 -1.39 3.13 -90.62 -0.28 -1.67 16 3 C -0.14 -1.36 9.19 37.16 0.34 -1.02 16 4 C 0.12 1.62 4.91 -4.04 -0.02 1.60 16 5 N -0.50 -8.20 2.54 -117.77 -0.30 -8.50 16 6 C 0.37 7.16 8.29 -318.54 -2.64 4.52 16 7 N -0.28 -6.10 11.98 30.36 0.36 -5.74 16 8 N -0.28 -6.66 11.03 30.80 0.34 -6.32 16 9 C 0.17 3.97 8.12 -87.78 -0.71 3.26 16 10 S 0.17 3.89 18.89 -107.50 -2.03 1.86 16 11 C -0.54 -14.36 9.37 30.85 0.29 -14.07 16 12 H 0.11 2.96 6.93 -52.49 -0.36 2.59 16 13 C 0.08 2.03 5.49 -17.49 -0.10 1.93 16 14 N -0.88 -23.08 13.22 55.48 0.73 -22.35 16 15 Si 0.93 20.33 29.55 -169.99 -5.02 15.30 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 18 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 19 N -0.44 -8.73 3.03 -61.16 -0.19 -8.91 16 20 C 0.19 3.19 6.65 -83.68 -0.56 2.63 16 21 C -0.14 -2.08 9.57 -39.48 -0.38 -2.45 16 22 C -0.05 -0.59 10.02 -39.51 -0.40 -0.99 16 23 C -0.14 -1.39 10.03 -39.57 -0.40 -1.79 16 24 C -0.03 -0.34 9.64 -39.29 -0.38 -0.72 16 25 C -0.17 -2.59 5.88 -104.91 -0.62 -3.20 16 26 C 0.57 9.05 6.20 -12.45 -0.08 8.97 16 27 O -0.51 -8.10 14.33 5.25 0.08 -8.02 16 28 H 0.06 0.75 7.99 -51.93 -0.41 0.33 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.70 6.08 -51.93 -0.32 0.38 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 1.20 7.40 -51.93 -0.38 0.82 16 36 H 0.10 1.29 7.88 -51.93 -0.41 0.88 16 37 H 0.28 6.81 8.32 -40.82 -0.34 6.47 16 38 H 0.15 2.52 4.99 -44.97 -0.22 2.30 16 39 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.15 1.45 7.76 -52.49 -0.41 1.04 16 LS Contribution 354.50 15.07 5.34 5.34 Total: -1.00 -30.04 354.50 -10.93 -40.97 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.61 Total: 0.80 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -5.63 Total: -4.43 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.95 Total: -51.82 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -2.03 Total: 1.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.04 -10.93 -40.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032985489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.283 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds