Wall clock time and date at job start Tue Mar 31 2020 05:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36660 * 120.03198 * 2 1 4 4 S 1.76201 * 119.02683 * 0.02562 * 3 2 1 5 5 C 1.76199 * 99.99986 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00405 * 0.02562 * 5 4 3 7 7 C 1.38767 * 119.99931 * 179.72349 * 5 4 3 8 8 N 1.31554 * 120.00068 * 0.27763 * 7 5 4 9 9 Si 1.86798 * 120.00348 * 180.27925 * 7 5 4 10 10 H 1.48506 * 109.46985 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 119.99925 * 9 7 5 12 12 H 1.48498 * 109.47150 * 240.00136 * 9 7 5 13 13 N 1.30661 * 121.94973 * 180.29904 * 3 2 1 14 14 C 1.36286 * 121.68391 * 359.44966 * 13 3 2 15 15 C 1.39673 * 128.88725 * 180.18982 * 14 13 3 16 16 C 1.34065 * 115.60788 * 180.32336 * 15 14 13 17 17 C 1.47874 * 124.78020 * 180.02562 * 16 15 14 18 18 C 1.39554 * 120.13797 * 359.72120 * 17 16 15 19 19 C 1.37965 * 119.85184 * 179.77318 * 18 17 16 20 20 C 1.38362 * 120.14308 * 0.50404 * 19 18 17 21 21 C 1.38347 * 120.28491 * 359.75097 * 20 19 18 22 22 C 1.37968 * 120.14833 * 359.97438 * 21 20 19 23 23 S 1.75562 * 110.44111 * 0.02562 * 16 15 14 24 24 C 1.39389 * 118.35599 * 0.53242 * 14 13 3 25 25 C 1.34857 * 120.02838 * 180.02562 * 2 1 3 26 26 O 1.21976 * 120.57410 * 359.95279 * 25 2 1 27 27 H 1.08999 * 109.47494 * 89.99640 * 1 2 3 28 28 H 1.08996 * 109.47057 * 210.00435 * 1 2 3 29 29 H 1.09001 * 109.46550 * 329.99497 * 1 2 3 30 30 H 0.96996 * 120.00417 * 179.97438 * 8 7 5 31 31 H 1.07995 * 122.20014 * 0.30509 * 15 14 13 32 32 H 1.07993 * 120.07542 * 0.02562 * 18 17 16 33 33 H 1.08000 * 119.92952 * 180.27848 * 19 18 17 34 34 H 1.07999 * 119.85412 * 179.72036 * 20 19 18 35 35 H 1.07999 * 119.92788 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.07432 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1831 0.0000 4 16 1.2431 2.6944 0.0007 5 6 2.5740 3.8490 0.0012 6 1 3.5949 3.4964 0.0006 7 6 2.3106 5.2114 -0.0040 8 7 1.0672 5.6410 -0.0038 9 14 3.7216 6.4356 -0.0113 10 1 5.0130 5.7024 -0.0098 11 1 3.6348 7.2837 -1.2271 12 1 3.6387 7.2937 1.1978 13 7 3.4549 1.2269 -0.0058 14 6 4.2091 0.0918 -0.0010 15 6 5.5999 -0.0369 -0.0024 16 6 6.0656 -1.2941 -0.0034 17 6 7.4975 -1.6632 -0.0043 18 6 8.4773 -0.6695 -0.0101 19 6 9.8115 -1.0205 -0.0062 20 6 10.1790 -2.3545 -0.0071 21 6 9.2125 -3.3444 -0.0068 22 6 7.8748 -3.0068 -0.0050 23 16 4.7359 -2.4404 -0.0034 24 6 3.5539 -1.1385 -0.0011 25 6 2.1399 -1.1676 -0.0005 26 8 1.5412 -2.2303 -0.0001 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3632 0.8900 0.5139 30 1 0.8831 6.5933 -0.0070 31 1 6.2571 0.8201 -0.0029 32 1 8.1918 0.3720 -0.0134 33 1 10.5708 -0.2525 -0.0061 34 1 11.2248 -2.6240 -0.0086 35 1 9.5058 -4.3838 -0.0071 36 1 7.1213 -3.7805 -0.0043 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033129049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:18 Heat of formation + Delta-G solvation = 28.563403 kcal Electronic energy + Delta-G solvation = -23477.909872 eV Core-core repulsion = 19951.045542 eV Total energy + Delta-G solvation = -3526.864330 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 344.039 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.48408 -40.27570 -39.01134 -37.62256 -35.11059 -34.71036 -32.60434 -31.93115 -30.40878 -28.37287 -27.74623 -26.21008 -25.28592 -23.84534 -22.92210 -21.66906 -20.53591 -19.33934 -18.77636 -18.25980 -17.71853 -17.53077 -17.11094 -16.97677 -16.33318 -16.01441 -15.82027 -14.99086 -14.96049 -14.90886 -14.64205 -14.48509 -14.29037 -13.95466 -13.87149 -13.66361 -13.35382 -13.09712 -13.01550 -12.89156 -12.52109 -12.23643 -12.09199 -11.78757 -11.47997 -11.33820 -11.07752 -10.95491 -10.76075 -10.53129 -9.92563 -9.61748 -9.25614 -8.58517 -8.56086 -6.36732 -1.09634 -0.05551 0.18114 0.44449 0.56682 0.63870 0.82708 1.34822 1.40286 1.41405 1.56218 1.62966 2.10692 2.44041 2.85756 2.88348 2.89864 3.15666 3.42284 3.72214 3.86281 3.96426 4.04545 4.20390 4.27341 4.33505 4.41370 4.52225 4.63689 4.65309 4.72312 4.83885 4.96985 5.10008 5.18655 5.38738 5.48898 5.50568 5.52119 5.55886 6.00080 6.29063 6.57250 6.74778 6.94499 8.52476 Molecular weight = 344.04amu Principal moments of inertia in cm(-1) A = 0.010865 B = 0.003669 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.353853 B = 7630.188432 C =10191.392991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.524 5.524 3 C 0.333 3.667 4 S 0.173 5.827 5 C -0.565 4.565 6 H 0.105 0.895 7 C 0.037 3.963 8 N -0.899 5.899 9 Si 0.993 3.007 10 H -0.265 1.265 11 H -0.269 1.269 12 H -0.269 1.269 13 N -0.545 5.545 14 C 0.194 3.806 15 C -0.147 4.147 16 C -0.080 4.080 17 C -0.049 4.049 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.105 4.105 21 C -0.117 4.117 22 C -0.114 4.114 23 S 0.224 5.776 24 C -0.402 4.402 25 C 0.569 3.431 26 O -0.571 6.571 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.282 0.718 31 H 0.161 0.839 32 H 0.130 0.870 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.923 -12.453 0.027 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.248 5.248 3 C -0.037 4.037 4 S 0.414 5.586 5 C -0.713 4.713 6 H 0.123 0.877 7 C -0.170 4.170 8 N -0.534 5.534 9 Si 0.815 3.185 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.194 1.194 13 N -0.274 5.274 14 C 0.062 3.938 15 C -0.178 4.178 16 C -0.200 4.200 17 C -0.051 4.051 18 C -0.124 4.124 19 C -0.138 4.138 20 C -0.124 4.124 21 C -0.135 4.135 22 C -0.133 4.133 23 S 0.490 5.510 24 C -0.528 4.528 25 C 0.365 3.635 26 O -0.454 6.454 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.172 0.828 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.441 -13.551 0.018 18.396 hybrid contribution 0.970 1.575 -0.001 1.850 sum 13.411 -11.976 0.017 17.980 Atomic orbital electron populations 1.22352 0.74649 1.05783 1.05499 1.46270 1.10775 1.05065 1.62650 1.26226 0.91936 0.93284 0.92258 1.83388 1.08010 0.86268 1.80941 1.23786 0.96064 0.92380 1.59069 0.87687 1.25964 0.99565 0.99157 0.92343 1.69960 1.20021 1.17217 1.46203 0.84964 0.77851 0.77140 0.78521 1.18946 1.19372 1.19369 1.68975 1.02663 1.27220 1.28569 1.19225 0.94460 0.87541 0.92574 1.19660 0.91829 0.98301 1.08035 1.23245 0.97793 0.96093 1.02858 1.18149 0.87554 0.94994 1.04450 1.21482 0.93141 0.99212 0.98599 1.21452 0.95315 0.97793 0.99232 1.21723 1.01152 0.92408 0.97081 1.21416 0.91543 1.01414 0.99137 1.21416 0.98035 0.94104 0.99732 1.83257 0.90596 1.03991 1.73128 1.24501 0.98223 1.00450 1.29584 1.15927 0.86834 0.83277 0.77425 1.90826 1.71288 1.28747 1.54535 0.88777 0.88048 0.87924 0.90799 0.82174 0.85186 0.83133 0.82635 0.82805 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.85 9.94 127.77 1.27 3.12 16 2 N -0.52 -21.24 3.02 -673.46 -2.03 -23.28 16 3 C 0.33 14.82 7.77 179.69 1.40 16.22 16 4 S 0.17 7.99 19.59 -56.49 -1.11 6.89 16 5 C -0.56 -29.36 9.24 67.95 0.63 -28.74 16 6 H 0.11 5.62 6.51 -2.91 -0.02 5.60 16 7 C 0.04 1.87 5.49 84.86 0.47 2.34 16 8 N -0.90 -46.82 13.22 21.64 0.29 -46.53 16 9 Si 0.99 40.26 29.55 68.60 2.03 42.29 16 10 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 12 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 13 N -0.54 -25.26 8.47 -189.23 -1.60 -26.87 16 14 C 0.19 8.06 6.97 39.08 0.27 8.33 16 15 C -0.15 -5.04 9.63 21.67 0.21 -4.83 16 16 C -0.08 -2.37 6.32 23.87 0.15 -2.22 16 17 C -0.05 -1.18 5.87 -20.09 -0.12 -1.29 16 18 C -0.10 -2.15 9.53 22.52 0.21 -1.94 16 19 C -0.12 -1.82 10.03 22.23 0.22 -1.60 16 20 C -0.11 -1.33 10.04 22.33 0.22 -1.11 16 21 C -0.12 -1.67 10.03 22.23 0.22 -1.44 16 22 C -0.11 -2.23 9.59 22.52 0.22 -2.01 16 23 S 0.22 7.06 22.14 -56.49 -1.25 5.81 16 24 C -0.40 -16.35 6.47 23.33 0.15 -16.20 16 25 C 0.57 24.34 7.46 85.01 0.63 24.97 16 26 O -0.57 -25.39 16.75 -5.24 -0.09 -25.48 16 27 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.10 2.97 7.45 -2.39 -0.02 2.95 16 29 H 0.10 3.04 6.55 -2.39 -0.02 3.03 16 30 H 0.28 13.62 8.31 -92.71 -0.77 12.84 16 31 H 0.16 5.00 6.79 -2.91 -0.02 4.98 16 32 H 0.13 2.61 6.69 -2.91 -0.02 2.59 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 34 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.13 2.31 7.24 -2.91 -0.02 2.29 16 Total: -1.00 -65.98 340.30 3.54 -62.44 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.15 Total: 11.14 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 6.16 Total: -6.41 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -3.35 Total: -96.67 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.09 Total: -25.48 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 16 Polarization: 15.06 SS G_CDS: -2.36 Total: 12.70 kcal Total: -65.98 3.54 -62.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033129049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.003 kcal (2) G-P(sol) polarization free energy of solvation -65.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds