Wall clock time and date at job start Tue Mar 31 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99604 * 2 1 4 4 C 1.50697 * 109.47043 * 269.99928 * 3 2 1 5 5 H 1.08003 * 120.00019 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00473 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99727 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00537 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47097 * 59.99730 * 8 6 4 10 10 H 1.48506 * 109.47175 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47207 * 299.99811 * 8 6 4 12 12 C 1.39366 * 120.00524 * 179.97438 * 2 1 3 13 13 C 1.39152 * 119.90807 * 359.97438 * 12 2 1 14 14 C 1.37668 * 120.09367 * 179.97438 * 13 12 2 15 15 C 1.39910 * 119.90942 * 0.02562 * 14 13 12 16 16 C 1.47138 * 120.09237 * 179.97438 * 15 14 13 17 17 C 1.34674 * 119.99808 * 179.72081 * 16 15 14 18 18 C 1.46840 * 119.99461 * 180.27576 * 17 16 15 19 19 C 1.39636 * 121.43519 * 0.02562 * 18 17 16 20 20 C 1.38659 * 119.46232 * 180.02562 * 19 18 17 21 21 N 1.31115 * 122.62074 * 359.97438 * 20 19 18 22 22 C 1.33672 * 122.45327 * 0.02562 * 21 20 19 23 23 C 1.40579 * 121.17487 * 179.97438 * 22 21 20 24 24 C 1.36158 * 119.71351 * 180.02562 * 23 22 21 25 25 C 1.39244 * 121.07929 * 359.97438 * 24 23 22 26 26 C 1.36390 * 120.78719 * 0.02562 * 25 24 23 27 27 C 1.39829 * 119.56347 * 359.71097 * 26 25 24 28 28 C 1.39913 * 119.81502 * 0.25131 * 15 14 13 29 29 C 1.37670 * 119.90988 * 359.49624 * 28 15 14 30 30 H 1.09000 * 109.46845 * 269.99686 * 1 2 3 31 31 H 1.08993 * 109.47676 * 30.00016 * 1 2 3 32 32 H 1.09000 * 109.46969 * 150.00624 * 1 2 3 33 33 H 1.09000 * 109.47144 * 29.99704 * 3 2 1 34 34 H 1.08997 * 109.47067 * 150.00240 * 3 2 1 35 35 H 0.97000 * 120.00546 * 179.97438 * 7 6 4 36 36 H 1.08003 * 119.95552 * 359.95630 * 13 12 2 37 37 H 1.07999 * 120.04809 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.00289 * 0.02562 * 16 15 14 39 39 H 1.07992 * 119.99841 * 0.27533 * 17 16 15 40 40 H 1.07998 * 120.27251 * 0.02562 * 19 18 17 41 41 H 1.07995 * 118.68663 * 179.97438 * 20 19 18 42 42 H 1.08002 * 120.14083 * 359.97438 * 23 22 21 43 43 H 1.07999 * 119.45344 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.60608 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.21480 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.04290 * 179.72797 * 28 15 14 47 47 H 1.07996 * 119.95967 * 180.25222 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1267 2.8775 -1.6729 7 7 3.5540 3.6177 -0.6732 8 14 3.4374 3.4171 -3.4340 9 1 2.1395 3.5954 -4.1333 10 1 4.1799 4.7032 -3.4340 11 1 4.2392 2.3820 -4.1347 12 6 2.1619 -1.2069 0.0005 13 6 1.4644 -2.4109 0.0016 14 6 2.1489 -3.6053 0.0016 15 6 3.5480 -3.6075 0.0011 16 6 4.2838 -4.8817 0.0017 17 6 5.6305 -4.8816 -0.0046 18 6 6.3647 -6.1533 -0.0101 19 6 5.6970 -7.3797 -0.0097 20 6 6.4311 -8.5560 -0.0145 21 7 7.7422 -8.5708 -0.0200 22 6 8.4722 -7.4511 -0.0209 23 6 9.8772 -7.4983 -0.0264 24 6 10.5915 -6.3392 -0.0266 25 6 9.9533 -5.1016 -0.0221 26 6 8.5920 -5.0181 -0.0168 27 6 7.8289 -6.1899 -0.0219 28 6 4.2456 -2.3947 0.0059 29 6 3.5534 -1.2047 0.0006 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5137 33 1 1.6083 2.0285 0.5138 34 1 3.1499 1.1385 0.5138 35 1 4.0314 4.4433 -0.8504 36 1 0.3843 -2.4084 0.0027 37 1 1.6068 -4.5394 0.0020 38 1 3.7439 -5.8171 0.0021 39 1 6.1704 -3.9464 -0.0055 40 1 4.6175 -7.4119 -0.0056 41 1 5.9019 -9.4974 -0.0136 42 1 10.3878 -8.4501 -0.0295 43 1 11.6707 -6.3804 -0.0304 44 1 10.5433 -4.1970 -0.0220 45 1 8.1066 -4.0534 -0.0128 46 1 5.3256 -2.3921 0.0099 47 1 4.0911 -0.2680 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036382777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:31 Heat of formation + Delta-G solvation = 100.294262 kcal Electronic energy + Delta-G solvation = -27258.722881 eV Core-core repulsion = 23564.271496 eV Total energy + Delta-G solvation = -3694.451385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.158 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.67867 -39.16188 -37.22666 -36.40332 -34.82220 -32.88778 -31.90197 -30.76062 -30.65001 -30.07382 -28.24889 -27.80633 -25.51129 -24.30060 -23.76326 -23.13092 -22.16543 -21.77994 -20.24957 -19.27071 -18.09332 -17.56879 -16.75822 -16.64313 -16.49416 -15.32939 -15.10457 -14.61488 -14.44957 -14.42686 -14.38412 -14.21567 -14.00496 -13.89758 -13.53949 -13.18857 -13.13157 -12.65212 -12.43457 -12.26182 -12.11214 -11.94104 -11.71365 -11.53983 -11.39250 -11.29601 -11.23402 -11.09133 -10.99950 -10.77123 -10.37624 -10.16589 -9.96609 -9.60415 -9.56828 -8.93359 -8.80228 -8.60720 -8.52975 -7.93552 -6.51375 -6.11832 -4.28653 0.00917 0.73811 1.21353 1.94306 2.02018 2.74628 3.05603 3.21561 3.26622 3.29532 3.94520 4.05376 4.16683 4.30614 4.31583 4.43760 4.53543 4.61567 4.73793 4.91954 5.00350 5.08513 5.11604 5.17145 5.30864 5.32157 5.34455 5.43232 5.62014 5.69290 5.75458 5.80683 5.87442 5.91190 5.93004 5.98537 6.11992 6.15911 6.22775 6.27954 6.40578 6.42763 6.48587 6.57822 6.71754 6.78517 6.86243 7.00984 7.09045 7.20823 7.35985 7.69386 7.86951 8.00469 8.06647 8.25957 8.79074 9.38687 10.85398 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.002226 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.467456 B =12576.628606 C =14341.646695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.536 4.536 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.257 3.743 13 C -0.227 4.227 14 C -0.044 4.044 15 C -0.173 4.173 16 C -0.019 4.019 17 C -0.184 4.184 18 C 0.041 3.959 19 C -0.204 4.204 20 C 0.146 3.854 21 N -0.499 5.499 22 C 0.132 3.868 23 C -0.101 4.101 24 C -0.101 4.101 25 C -0.126 4.126 26 C -0.086 4.086 27 C -0.105 4.105 28 C -0.047 4.047 29 C -0.192 4.192 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.266 0.734 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.154 0.846 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.132 0.868 46 H 0.117 0.883 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 -19.084 3.024 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.307 5.307 3 C 0.126 3.874 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.147 3.853 13 C -0.250 4.250 14 C -0.063 4.063 15 C -0.176 4.176 16 C -0.038 4.038 17 C -0.203 4.203 18 C 0.033 3.967 19 C -0.223 4.223 20 C -0.026 4.026 21 N -0.208 5.208 22 C 0.012 3.988 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.144 4.144 26 C -0.105 4.105 27 C -0.107 4.107 28 C -0.066 4.066 29 C -0.215 4.215 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.155 0.845 41 H 0.171 0.829 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.149 0.851 46 H 0.135 0.865 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.453 -19.389 3.070 20.374 hybrid contribution -0.352 1.288 -1.038 1.691 sum 5.101 -18.101 2.032 18.915 Atomic orbital electron populations 1.21568 0.81103 1.02312 1.00102 1.47231 1.04817 1.04892 1.73723 1.19384 0.92198 0.78545 0.97296 1.21485 1.36927 1.06651 0.92379 0.92240 1.24957 0.95260 0.96196 0.97541 1.69913 1.37979 1.14391 1.30911 0.86560 0.78510 0.77949 0.84486 1.20185 1.21100 1.20017 1.18158 0.91605 0.86100 0.89460 1.20539 0.99329 0.91248 1.13889 1.20860 0.92836 0.96913 0.95657 1.18472 0.93021 0.92069 1.14007 1.22192 0.93612 0.96443 0.91591 1.21623 0.94230 0.95186 1.09225 1.20483 0.91147 0.93692 0.91338 1.22260 1.01324 0.92476 1.06283 1.22605 0.89612 0.97950 0.92447 1.67732 1.08001 1.30183 1.14880 1.18760 0.94065 0.87823 0.98110 1.20774 0.91342 0.99080 1.00773 1.20890 1.00251 0.92168 0.98771 1.20958 0.94625 0.98024 1.00793 1.20947 0.93968 0.97618 0.97958 1.19804 0.92856 0.94539 1.03496 1.21033 0.98867 0.91316 0.95433 1.20862 0.92575 0.98997 1.09023 0.94136 0.91086 0.92376 0.94890 0.94392 0.92444 0.86377 0.86742 0.86570 0.85554 0.84456 0.82858 0.84982 0.85485 0.85477 0.85050 0.86543 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.50 10.18 59.85 0.61 2.11 16 2 N -0.60 -12.08 2.98 -180.95 -0.54 -12.61 16 3 C 0.25 5.83 4.90 -5.19 -0.03 5.81 16 4 C -0.54 -14.00 9.39 -34.44 -0.32 -14.33 16 5 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 6 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 7 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.26 4.82 6.56 -83.76 -0.55 4.27 16 13 C -0.23 -3.58 9.18 -39.45 -0.36 -3.94 16 14 C -0.04 -0.61 9.78 -39.16 -0.38 -1.00 16 15 C -0.17 -2.49 5.87 -105.03 -0.62 -3.11 16 16 C -0.02 -0.23 9.33 -37.23 -0.35 -0.58 16 17 C -0.18 -2.23 8.99 -37.37 -0.34 -2.56 16 18 C 0.04 0.50 6.07 -102.58 -0.62 -0.12 16 19 C -0.20 -2.15 9.49 -38.90 -0.37 -2.52 16 20 C 0.15 1.55 11.08 -17.70 -0.20 1.35 16 21 N -0.50 -6.43 10.27 -11.17 -0.11 -6.55 16 22 C 0.13 1.71 6.62 -84.91 -0.56 1.15 16 23 C -0.10 -1.09 9.99 -39.45 -0.39 -1.49 16 24 C -0.10 -0.93 9.94 -39.96 -0.40 -1.33 16 25 C -0.13 -1.21 9.97 -39.87 -0.40 -1.61 16 26 C -0.09 -0.97 9.48 -39.65 -0.38 -1.34 16 27 C -0.10 -1.34 5.90 -104.71 -0.62 -1.96 16 28 C -0.05 -0.76 9.40 -39.16 -0.37 -1.12 16 29 C -0.19 -3.62 9.18 -39.45 -0.36 -3.98 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 32 H 0.06 0.81 6.18 -51.93 -0.32 0.49 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 0.95 6.18 -51.93 -0.32 0.63 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.12 1.64 6.12 -52.48 -0.32 1.32 16 37 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.12 1.12 6.19 -52.49 -0.32 0.80 16 39 H 0.13 1.49 4.62 -52.49 -0.24 1.25 16 40 H 0.14 1.11 6.32 -52.49 -0.33 0.78 16 41 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.13 1.31 6.54 -52.49 -0.34 0.97 16 46 H 0.12 1.62 6.16 -52.49 -0.32 1.30 16 47 H 0.14 2.83 6.11 -52.49 -0.32 2.51 16 LS Contribution 389.25 15.07 5.87 5.87 Total: -1.00 -29.93 389.25 -11.94 -41.86 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.77 Total: 4.53 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -7.09 Total: -24.71 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.08 Total: -43.21 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.93 -11.94 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036382777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.158 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds