Wall clock time and date at job start Tue Mar 31 2020 07:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48507 * 109.47052 * 239.99850 * 3 2 1 5 5 H 1.48496 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47208 * 120.00486 * 3 2 1 7 7 C 1.37879 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00013 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00099 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47428 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00250 * 83.95775 * 10 9 7 12 12 C 1.50698 * 109.47147 * 89.99937 * 11 10 9 13 13 C 1.38230 * 120.00518 * 269.73059 * 12 11 10 14 14 C 1.38235 * 120.00374 * 179.76373 * 13 12 11 15 15 C 1.38236 * 119.99393 * 0.51125 * 14 13 12 16 16 C 1.38232 * 120.00164 * 359.74351 * 15 14 13 17 17 C 1.38226 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.34779 * 120.00141 * 263.96052 * 10 9 7 19 19 O 1.21283 * 120.00205 * 184.08496 * 18 10 9 20 20 C 1.50703 * 120.00069 * 4.09157 * 18 10 9 21 21 H 1.09000 * 109.47052 * 46.90362 * 20 18 10 22 22 C 1.52998 * 109.46948 * 286.90464 * 20 18 10 23 23 C 1.53000 * 109.47128 * 300.00055 * 22 20 18 24 24 C 1.53000 * 109.46822 * 300.00096 * 23 22 20 25 25 C 1.52998 * 109.47347 * 60.00038 * 24 23 22 26 26 C 1.53000 * 109.47128 * 299.99775 * 25 24 23 27 27 H 1.08999 * 109.47604 * 300.00184 * 26 25 24 28 28 C 1.50696 * 109.47282 * 179.97438 * 26 25 24 29 29 O 1.20821 * 120.00591 * 239.99968 * 28 26 25 30 30 O 1.34234 * 119.99714 * 60.00556 * 28 26 25 31 31 H 0.96998 * 120.00300 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47374 * 60.00248 * 9 7 2 33 33 H 1.09000 * 109.47157 * 299.99895 * 9 7 2 34 34 H 1.08997 * 109.47634 * 210.00460 * 11 10 9 35 35 H 1.09003 * 109.46826 * 330.00258 * 11 10 9 36 36 H 1.08000 * 119.99903 * 359.97438 * 13 12 11 37 37 H 1.07997 * 120.00323 * 180.22965 * 14 13 12 38 38 H 1.08005 * 119.99437 * 179.72208 * 15 14 13 39 39 H 1.08006 * 119.99783 * 179.97438 * 16 15 14 40 40 H 1.07999 * 120.00055 * 179.97438 * 17 16 15 41 41 H 1.09004 * 109.47577 * 59.99758 * 22 20 18 42 42 H 1.08995 * 109.47027 * 180.02562 * 22 20 18 43 43 H 1.08999 * 109.47604 * 59.99816 * 23 22 20 44 44 H 1.08998 * 109.47317 * 180.02562 * 23 22 20 45 45 H 1.09004 * 109.47599 * 179.97438 * 24 23 22 46 46 H 1.09004 * 109.47324 * 299.99717 * 24 23 22 47 47 H 1.08995 * 109.47027 * 59.99801 * 25 24 23 48 48 H 1.09004 * 109.47577 * 180.02562 * 25 24 23 49 49 H 0.96701 * 116.99720 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 2.7816 -4.0833 1.2592 12 6 1.9061 -5.1628 1.8416 13 6 0.8828 -4.8298 2.7092 14 6 0.0766 -5.8196 3.2395 15 6 0.3006 -7.1435 2.9105 16 6 1.3272 -7.4769 2.0470 17 6 2.1303 -6.4867 1.5130 18 6 2.5467 -4.2042 -1.1630 19 8 3.2767 -5.1728 -1.1575 20 6 2.0241 -3.6620 -2.4684 21 1 2.1488 -2.5794 -2.4881 22 6 0.5399 -4.0070 -2.6063 23 6 0.3649 -5.5267 -2.5786 24 6 1.1435 -6.1510 -3.7383 25 6 2.6277 -5.8059 -3.6005 26 6 2.8027 -4.2862 -3.6282 27 1 2.4247 -3.8940 -4.5723 28 6 4.2645 -3.9464 -3.4918 29 8 4.6443 -3.2738 -2.5627 30 8 5.1447 -4.3908 -4.4027 31 1 -0.4850 0.8400 -0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 3.7783 -4.4839 1.0746 35 1 2.8485 -3.2518 1.9609 36 1 0.7109 -3.7960 2.9700 37 1 -0.7252 -5.5592 3.9145 38 1 -0.3265 -7.9172 3.3284 39 1 1.5024 -8.5113 1.7903 40 1 2.9326 -6.7473 0.8387 41 1 -0.0148 -3.5623 -1.7800 42 1 0.1621 -3.6153 -3.5506 43 1 0.7429 -5.9189 -1.6344 44 1 -0.6924 -5.7726 -2.6772 45 1 1.0192 -7.2337 -3.7184 46 1 0.7655 -5.7589 -4.6825 47 1 3.0057 -6.1981 -2.6563 48 1 3.1824 -6.2503 -4.4270 49 1 6.0714 -4.1467 -4.2732 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036563347.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:35 Heat of formation + Delta-G solvation = -109.854292 kcal Electronic energy + Delta-G solvation = -32653.454038 eV Core-core repulsion = 28544.862346 eV Total energy + Delta-G solvation = -4108.591692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.83687 -39.32091 -38.61364 -36.70199 -35.73014 -35.03578 -32.74095 -31.66690 -31.03342 -30.54619 -30.25642 -27.36104 -25.86851 -24.21182 -23.34390 -22.40700 -22.01914 -21.33346 -20.80859 -20.08157 -17.94762 -17.61146 -16.78454 -16.54574 -16.36555 -16.00831 -15.25345 -15.17370 -14.94040 -14.65829 -14.50920 -14.34690 -14.04837 -13.51518 -13.42174 -13.11520 -13.04047 -12.62343 -12.49717 -12.35102 -12.25785 -12.09540 -11.85142 -11.75476 -11.45465 -11.18256 -11.13903 -11.01666 -10.86128 -10.85711 -10.61905 -10.56874 -10.45290 -10.33659 -10.10845 -9.91062 -9.79745 -9.56975 -8.76654 -8.58500 -8.52406 -8.29737 -7.65292 -6.14964 -4.20609 1.64813 1.74408 2.65493 3.27144 3.31232 3.34680 3.35305 3.51365 3.86987 4.31014 4.38338 4.80365 4.99792 5.08922 5.18189 5.19492 5.20776 5.31016 5.34527 5.43923 5.48310 5.50890 5.62956 5.67724 5.73086 5.79090 5.86715 5.88174 5.98427 6.06572 6.17538 6.25790 6.27568 6.34850 6.40597 6.42199 6.48601 6.50912 6.55135 6.70993 6.78893 6.80443 6.83317 6.92854 7.06417 7.26780 7.34376 7.59345 7.81211 8.10686 8.27472 8.43080 8.85409 9.10912 9.46723 10.91464 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006895 B = 0.006337 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4059.919662 B = 4417.389355 C = 6986.702171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.227 3.773 10 N -0.585 5.585 11 C 0.158 3.842 12 C -0.091 4.091 13 C -0.101 4.101 14 C -0.127 4.127 15 C -0.127 4.127 16 C -0.130 4.130 17 C -0.097 4.097 18 C 0.544 3.456 19 O -0.570 6.570 20 C -0.093 4.093 21 H 0.113 0.887 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.111 4.111 25 C -0.132 4.132 26 C -0.054 4.054 27 H 0.104 0.896 28 C 0.483 3.517 29 O -0.496 6.496 30 O -0.524 6.524 31 H 0.265 0.735 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.115 0.885 48 H 0.062 0.938 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 -12.110 -3.738 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.108 3.892 10 N -0.313 5.313 11 C 0.035 3.965 12 C -0.093 4.093 13 C -0.120 4.120 14 C -0.145 4.145 15 C -0.145 4.145 16 C -0.148 4.148 17 C -0.116 4.116 18 C 0.333 3.667 19 O -0.452 6.452 20 C -0.114 4.114 21 H 0.131 0.869 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.149 4.149 25 C -0.169 4.169 26 C -0.073 4.073 27 H 0.121 0.879 28 C 0.324 3.676 29 O -0.381 6.381 30 O -0.336 6.336 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.132 0.868 48 H 0.081 0.919 49 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.666 -12.347 -3.504 12.852 hybrid contribution 0.961 1.438 0.093 1.732 sum 1.627 -10.909 -3.411 11.545 Atomic orbital electron populations 1.69908 1.05891 1.27275 1.50094 1.24906 0.94814 0.99114 0.94887 0.86614 0.79580 0.82750 0.78892 1.20143 1.21225 1.20185 1.21506 0.93778 0.90461 1.51508 0.91990 1.19711 0.87725 0.82689 0.99105 1.48078 1.44896 1.34061 1.04277 1.20178 0.95234 0.94678 0.86455 1.20437 0.97249 0.94977 0.96611 1.21195 0.94617 0.99586 0.96605 1.21084 0.99699 0.93047 1.00698 1.21055 0.98277 0.96220 0.98986 1.21080 0.96381 0.98969 0.98414 1.21210 0.99476 0.92327 0.98558 1.19946 0.79387 0.82104 0.85229 1.90376 1.39632 1.28147 1.87069 1.21159 0.95623 1.03039 0.91594 0.86868 1.21731 0.93701 0.96160 1.03773 1.21593 0.99699 0.95496 0.99236 1.21479 0.94988 1.00083 0.98326 1.21993 0.97009 0.92162 1.05702 1.20808 0.86926 0.99265 1.00326 0.87851 1.23413 0.89451 0.75898 0.78823 1.90768 1.79989 1.35843 1.31529 1.84512 1.22573 1.73390 1.53081 0.92578 0.92971 0.94923 0.90360 0.89656 0.85803 0.86517 0.86820 0.86749 0.85611 0.88998 0.91129 0.91637 0.92039 0.92047 0.92375 0.86760 0.91933 0.73985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.24 13.29 55.43 0.74 -23.50 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.53 -13.93 9.22 -34.44 -0.32 -14.25 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.23 5.29 4.72 -5.20 -0.02 5.26 16 10 N -0.58 -12.23 2.44 -176.44 -0.43 -12.66 16 11 C 0.16 3.03 5.52 -5.19 -0.03 3.00 16 12 C -0.09 -1.58 5.46 -104.63 -0.57 -2.15 16 13 C -0.10 -1.66 9.70 -39.59 -0.38 -2.04 16 14 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 15 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 16 C -0.13 -1.83 10.05 -39.59 -0.40 -2.23 16 17 C -0.10 -1.57 9.60 -39.59 -0.38 -1.95 16 18 C 0.54 10.93 4.20 -10.98 -0.05 10.88 16 19 O -0.57 -11.70 11.10 -10.21 -0.11 -11.81 16 20 C -0.09 -1.68 1.36 -91.77 -0.12 -1.81 16 21 H 0.11 2.36 7.50 -51.93 -0.39 1.97 16 22 C -0.12 -1.85 5.12 -26.73 -0.14 -1.99 16 23 C -0.12 -1.75 5.70 -26.73 -0.15 -1.90 16 24 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 25 C -0.13 -1.88 4.86 -26.73 -0.13 -2.01 16 26 C -0.05 -0.84 2.38 -91.77 -0.22 -1.06 16 27 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 28 C 0.48 8.25 6.80 36.00 0.24 8.49 16 29 O -0.50 -10.47 15.28 -24.37 -0.37 -10.84 16 30 O -0.52 -7.01 13.33 -39.27 -0.52 -7.53 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.05 1.23 3.95 -51.93 -0.21 1.02 16 33 H 0.03 0.80 8.12 -51.93 -0.42 0.38 16 34 H 0.08 1.53 7.43 -51.93 -0.39 1.14 16 35 H 0.09 1.64 8.01 -51.93 -0.42 1.23 16 36 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 40 H 0.13 2.11 7.42 -52.49 -0.39 1.73 16 41 H 0.09 1.65 5.41 -51.93 -0.28 1.37 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.08 7.21 -51.93 -0.37 0.71 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.11 1.94 5.08 -51.93 -0.26 1.68 16 48 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 49 H 0.40 3.78 9.10 45.56 0.41 4.19 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -30.56 388.86 -10.07 -40.62 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -6.48 Total: 11.98 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -3.72 Total: -7.98 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.31 Total: -36.16 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -1.01 Total: -30.19 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.56 -10.07 -40.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036563347.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.232 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds