Wall clock time and date at job start Tue Mar 31 2020 07:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00244 * 2 1 4 4 H 1.48496 * 109.47049 * 239.99618 * 3 2 1 5 5 H 1.48504 * 109.47418 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47011 * 119.99679 * 3 2 1 7 7 C 1.37875 * 119.99166 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00430 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99813 * 263.57295 * 10 9 7 12 12 C 1.50694 * 109.47018 * 269.99947 * 11 10 9 13 13 C 1.38239 * 120.00055 * 269.72293 * 12 11 10 14 14 C 1.38237 * 119.99872 * 179.74237 * 13 12 11 15 15 C 1.38237 * 120.00096 * 0.53936 * 14 13 12 16 16 C 1.38233 * 119.99656 * 359.74363 * 15 14 13 17 17 C 1.38234 * 120.00492 * 359.97336 * 16 15 14 18 18 C 1.34776 * 119.99919 * 83.57417 * 10 9 7 19 19 O 1.21283 * 119.99642 * 184.70432 * 18 10 9 20 20 C 1.50699 * 120.00152 * 4.70148 * 18 10 9 21 21 H 1.09004 * 109.46849 * 316.54000 * 20 18 10 22 22 C 1.53002 * 109.46815 * 76.53571 * 20 18 10 23 23 C 1.52999 * 109.47065 * 180.02562 * 22 20 18 24 24 C 1.53007 * 109.47203 * 300.00293 * 23 22 20 25 25 C 1.53006 * 109.47025 * 59.99749 * 24 23 22 26 26 C 1.52992 * 109.47379 * 196.53862 * 20 18 10 27 27 H 1.09002 * 109.46907 * 300.00301 * 26 20 18 28 28 C 1.50704 * 109.47191 * 59.99704 * 26 20 18 29 29 O 1.20828 * 119.99480 * 0.02562 * 28 26 20 30 30 O 1.34227 * 120.00171 * 179.97438 * 28 26 20 31 31 H 0.97003 * 119.99592 * 0.02562 * 1 2 3 32 32 H 1.09010 * 109.47300 * 59.99949 * 9 7 2 33 33 H 1.08998 * 109.47177 * 299.99464 * 9 7 2 34 34 H 1.09003 * 109.47240 * 30.00387 * 11 10 9 35 35 H 1.09007 * 109.46785 * 150.00251 * 11 10 9 36 36 H 1.07998 * 119.99827 * 0.02562 * 13 12 11 37 37 H 1.08000 * 120.00179 * 180.29722 * 14 13 12 38 38 H 1.07992 * 119.99993 * 179.76464 * 15 14 13 39 39 H 1.08005 * 119.99807 * 180.02562 * 16 15 14 40 40 H 1.07995 * 120.00361 * 179.97438 * 17 16 15 41 41 H 1.08991 * 109.47422 * 300.00038 * 22 20 18 42 42 H 1.09004 * 109.47061 * 60.00559 * 22 20 18 43 43 H 1.08998 * 109.47115 * 59.99719 * 23 22 20 44 44 H 1.08999 * 109.47289 * 180.02562 * 23 22 20 45 45 H 1.08997 * 109.47567 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.46955 * 300.00116 * 24 23 22 47 47 H 1.08991 * 109.47098 * 180.02562 * 25 24 23 48 48 H 1.09004 * 109.47116 * 59.99856 * 25 24 23 49 49 H 0.96700 * 116.99954 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4991 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.5708 -4.2618 -1.2603 12 6 1.6238 -5.4017 -1.5335 13 6 1.9169 -6.6703 -1.0690 14 6 1.0455 -7.7149 -1.3150 15 6 -0.1134 -7.4932 -2.0352 16 6 -0.4036 -6.2259 -2.5047 17 6 0.4648 -5.1801 -2.2537 18 6 2.7400 -4.0401 1.1604 19 8 3.5912 -4.9039 1.1525 20 6 2.2829 -3.4446 2.4671 21 1 2.2008 -2.3625 2.3642 22 6 0.9185 -4.0261 2.8430 23 6 0.4541 -3.4211 4.1693 24 6 1.4694 -3.7532 5.2647 25 6 2.8338 -3.1716 4.8887 26 6 3.2983 -3.7772 3.5621 27 1 3.3804 -4.8592 3.6649 28 6 4.6421 -3.2044 3.1918 29 8 4.7740 -2.5925 2.1582 30 8 5.6923 -3.3731 4.0105 31 1 -0.4850 0.8401 -0.0004 32 1 0.6244 -2.5571 -0.8897 33 1 0.6239 -2.5567 0.8903 34 1 2.5116 -3.5375 -2.0727 35 1 3.5889 -4.6446 -1.1882 36 1 2.8243 -6.8443 -0.5099 37 1 1.2721 -8.7050 -0.9480 38 1 -0.7922 -8.3101 -2.2307 39 1 -1.3092 -6.0526 -3.0671 40 1 0.2384 -4.1900 -2.6209 41 1 0.1951 -3.7892 2.0629 42 1 1.0006 -5.1082 2.9459 43 1 0.3720 -2.3391 4.0661 44 1 -0.5177 -3.8357 4.4373 45 1 1.1389 -3.3218 6.2095 46 1 1.5517 -4.8352 5.3679 47 1 3.5572 -3.4086 5.6688 48 1 2.7516 -2.0896 4.7854 49 1 6.5337 -2.9873 3.7305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036563349.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:41 Heat of formation + Delta-G solvation = -122.969770 kcal Electronic energy + Delta-G solvation = -32277.874695 eV Core-core repulsion = 28168.714273 eV Total energy + Delta-G solvation = -4109.160422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.60451 -39.29414 -38.51539 -37.10237 -35.68471 -34.99351 -32.76949 -31.59559 -31.06399 -30.58253 -30.36733 -27.34712 -25.86434 -24.19993 -23.25829 -22.59951 -22.08722 -21.31269 -20.75923 -19.63954 -18.25026 -17.56895 -16.74186 -16.51574 -16.42516 -15.97464 -15.48346 -15.15561 -14.92924 -14.62738 -14.49197 -14.28571 -14.05133 -13.63293 -13.53398 -13.13074 -13.04260 -12.65768 -12.58933 -12.38652 -12.18486 -12.13076 -11.86118 -11.55718 -11.37616 -11.21010 -11.08198 -11.00896 -10.93209 -10.82861 -10.72042 -10.60557 -10.50831 -10.36634 -10.08749 -10.05195 -9.84652 -9.63957 -8.96672 -8.61827 -8.52900 -8.36947 -7.65464 -6.12644 -4.17758 1.61447 1.70804 2.70789 3.28980 3.32472 3.36870 3.37299 3.52334 3.85328 4.29295 4.39966 4.75959 4.93401 4.99014 5.15670 5.17562 5.19904 5.27145 5.33150 5.39755 5.47208 5.52692 5.57626 5.59343 5.69734 5.74836 5.78193 5.83243 5.96873 6.01917 6.13324 6.21575 6.22979 6.24542 6.31096 6.37045 6.39196 6.43582 6.48694 6.69189 6.74851 6.76719 6.82458 6.87962 7.02269 7.26140 7.30816 7.59987 7.85412 8.14035 8.32184 8.40155 8.89922 9.10879 9.49522 10.93849 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007495 B = 0.005473 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3735.137260 B = 5114.668166 C = 6961.041630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.065 0.935 9 C 0.236 3.764 10 N -0.587 5.587 11 C 0.155 3.845 12 C -0.092 4.092 13 C -0.100 4.100 14 C -0.129 4.129 15 C -0.127 4.127 16 C -0.126 4.126 17 C -0.101 4.101 18 C 0.541 3.459 19 O -0.580 6.580 20 C -0.093 4.093 21 H 0.122 0.878 22 C -0.106 4.106 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.111 4.111 26 C -0.055 4.055 27 H 0.110 0.890 28 C 0.480 3.520 29 O -0.490 6.490 30 O -0.525 6.525 31 H 0.264 0.736 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 -10.402 5.744 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.083 0.917 9 C 0.116 3.884 10 N -0.315 5.315 11 C 0.032 3.968 12 C -0.093 4.093 13 C -0.119 4.119 14 C -0.147 4.147 15 C -0.145 4.145 16 C -0.144 4.144 17 C -0.120 4.120 18 C 0.330 3.670 19 O -0.462 6.462 20 C -0.115 4.115 21 H 0.140 0.860 22 C -0.144 4.144 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.075 4.075 27 H 0.128 0.872 28 C 0.321 3.679 29 O -0.375 6.375 30 O -0.337 6.337 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.568 -10.671 5.540 12.037 hybrid contribution 0.949 1.370 -0.363 1.706 sum 1.517 -9.301 5.177 10.752 Atomic orbital electron populations 1.69922 1.05865 1.27184 1.50270 1.24898 0.94789 0.99066 0.94953 0.86619 0.79558 0.82760 0.78934 1.20209 1.21282 1.20153 1.21552 0.93951 0.90306 1.51168 0.91710 1.19524 0.87548 0.82577 0.98703 1.48072 1.45161 1.33842 1.04470 1.20194 0.96749 0.92211 0.87688 1.20452 0.96443 0.95209 0.97234 1.21203 0.99736 0.92358 0.98568 1.21088 0.95066 0.98799 0.99768 1.21063 0.97351 0.96945 0.99149 1.21093 0.99473 0.93089 1.00770 1.21185 0.93712 0.99107 0.97993 1.20053 0.80369 0.80994 0.85553 1.90530 1.33290 1.34527 1.87810 1.21221 0.94411 1.04755 0.91064 0.86036 1.21501 0.95043 0.99642 0.98209 1.21563 0.98110 1.01924 0.94151 1.21542 0.94395 1.00879 0.98531 1.21564 0.97646 1.00981 0.94700 1.20824 0.87721 1.02332 0.96589 0.87233 1.23380 0.86295 0.77026 0.81162 1.90799 1.84476 1.37756 1.24463 1.84500 1.21629 1.74867 1.52675 0.92650 0.94742 0.94072 0.89791 0.90126 0.85763 0.86656 0.86725 0.86431 0.85792 0.89998 0.92048 0.91007 0.91667 0.91555 0.91790 0.90686 0.91072 0.73972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 13.29 55.43 0.74 -23.66 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.05 8.55 -34.44 -0.29 -14.35 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.24 5.58 4.79 -5.19 -0.02 5.55 16 10 N -0.59 -12.58 2.46 -176.42 -0.43 -13.02 16 11 C 0.15 3.00 5.54 -5.19 -0.03 2.97 16 12 C -0.09 -1.60 5.46 -104.62 -0.57 -2.17 16 13 C -0.10 -1.63 9.70 -39.58 -0.38 -2.02 16 14 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 15 C -0.13 -1.68 10.05 -39.58 -0.40 -2.07 16 16 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 17 C -0.10 -1.64 9.70 -39.58 -0.38 -2.02 16 18 C 0.54 11.44 5.35 -10.99 -0.06 11.38 16 19 O -0.58 -12.93 14.47 -7.13 -0.10 -13.04 16 20 C -0.09 -1.74 0.87 -91.77 -0.08 -1.82 16 21 H 0.12 2.62 6.62 -51.93 -0.34 2.28 16 22 C -0.11 -1.69 4.93 -26.73 -0.13 -1.82 16 23 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 24 C -0.12 -1.31 5.92 -26.72 -0.16 -1.47 16 25 C -0.11 -1.44 5.14 -26.70 -0.14 -1.57 16 26 C -0.06 -0.89 1.79 -91.75 -0.16 -1.05 16 27 H 0.11 1.72 7.93 -51.93 -0.41 1.30 16 28 C 0.48 8.57 6.84 36.01 0.25 8.82 16 29 O -0.49 -10.82 15.36 -23.64 -0.36 -11.18 16 30 O -0.52 -7.31 13.33 -39.25 -0.52 -7.84 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.03 0.85 8.02 -51.92 -0.42 0.43 16 33 H 0.04 0.99 4.88 -51.93 -0.25 0.74 16 34 H 0.08 1.60 8.02 -51.93 -0.42 1.18 16 35 H 0.08 1.60 7.30 -51.93 -0.38 1.22 16 36 H 0.12 2.11 7.84 -52.49 -0.41 1.70 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 40 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 41 H 0.08 1.44 6.18 -51.93 -0.32 1.12 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.40 4.02 9.10 45.56 0.41 4.43 16 LS Contribution 397.07 15.07 5.98 5.98 Total: -1.00 -31.74 397.07 -10.08 -41.82 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.73 Total: 10.87 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -3.62 Total: -6.11 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.30 Total: -36.68 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.99 Total: -32.06 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.74 -10.08 -41.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036563349.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.152 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds