Wall clock time and date at job start Tue Mar 31 2020 07:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00244 * 2 1 4 4 H 1.48496 * 109.47049 * 239.99618 * 3 2 1 5 5 H 1.48504 * 109.47418 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47011 * 119.99679 * 3 2 1 7 7 C 1.37875 * 119.99166 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00430 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99813 * 263.57295 * 10 9 7 12 12 C 1.50694 * 109.47018 * 269.99947 * 11 10 9 13 13 C 1.38239 * 120.00055 * 269.72293 * 12 11 10 14 14 C 1.38237 * 119.99872 * 179.74237 * 13 12 11 15 15 C 1.38237 * 120.00096 * 0.53936 * 14 13 12 16 16 C 1.38233 * 119.99656 * 359.74363 * 15 14 13 17 17 C 1.38234 * 120.00492 * 359.97336 * 16 15 14 18 18 C 1.34776 * 119.99919 * 83.57417 * 10 9 7 19 19 O 1.21283 * 119.99642 * 184.70432 * 18 10 9 20 20 C 1.50699 * 120.00152 * 4.70148 * 18 10 9 21 21 H 1.09004 * 109.46849 * 316.54000 * 20 18 10 22 22 C 1.53002 * 109.46815 * 76.53571 * 20 18 10 23 23 C 1.52999 * 109.47065 * 180.02562 * 22 20 18 24 24 C 1.53007 * 109.47203 * 300.00293 * 23 22 20 25 25 C 1.53006 * 109.47025 * 59.99749 * 24 23 22 26 26 C 1.52992 * 109.47379 * 196.53862 * 20 18 10 27 27 H 1.09002 * 109.46907 * 300.00301 * 26 20 18 28 28 C 1.50704 * 109.47191 * 59.99704 * 26 20 18 29 29 O 1.20828 * 119.99480 * 0.02562 * 28 26 20 30 30 O 1.34227 * 120.00171 * 179.97438 * 28 26 20 31 31 H 0.97003 * 119.99592 * 0.02562 * 1 2 3 32 32 H 1.09010 * 109.47300 * 59.99949 * 9 7 2 33 33 H 1.08998 * 109.47177 * 299.99464 * 9 7 2 34 34 H 1.09003 * 109.47240 * 30.00387 * 11 10 9 35 35 H 1.09007 * 109.46785 * 150.00251 * 11 10 9 36 36 H 1.07998 * 119.99827 * 0.02562 * 13 12 11 37 37 H 1.08000 * 120.00179 * 180.29722 * 14 13 12 38 38 H 1.07992 * 119.99993 * 179.76464 * 15 14 13 39 39 H 1.08005 * 119.99807 * 180.02562 * 16 15 14 40 40 H 1.07995 * 120.00361 * 179.97438 * 17 16 15 41 41 H 1.08991 * 109.47422 * 300.00038 * 22 20 18 42 42 H 1.09004 * 109.47061 * 60.00559 * 22 20 18 43 43 H 1.08998 * 109.47115 * 59.99719 * 23 22 20 44 44 H 1.08999 * 109.47289 * 180.02562 * 23 22 20 45 45 H 1.08997 * 109.47567 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.46955 * 300.00116 * 24 23 22 47 47 H 1.08991 * 109.47098 * 180.02562 * 25 24 23 48 48 H 1.09004 * 109.47116 * 59.99856 * 25 24 23 49 49 H 0.96700 * 116.99954 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4991 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 2.5708 -4.2618 -1.2603 12 6 1.6238 -5.4017 -1.5335 13 6 1.9169 -6.6703 -1.0690 14 6 1.0455 -7.7149 -1.3150 15 6 -0.1134 -7.4932 -2.0352 16 6 -0.4036 -6.2259 -2.5047 17 6 0.4648 -5.1801 -2.2537 18 6 2.7400 -4.0401 1.1604 19 8 3.5912 -4.9039 1.1525 20 6 2.2829 -3.4446 2.4671 21 1 2.2008 -2.3625 2.3642 22 6 0.9185 -4.0261 2.8430 23 6 0.4541 -3.4211 4.1693 24 6 1.4694 -3.7532 5.2647 25 6 2.8338 -3.1716 4.8887 26 6 3.2983 -3.7772 3.5621 27 1 3.3804 -4.8592 3.6649 28 6 4.6421 -3.2044 3.1918 29 8 4.7740 -2.5925 2.1582 30 8 5.6923 -3.3731 4.0105 31 1 -0.4850 0.8401 -0.0004 32 1 0.6244 -2.5571 -0.8897 33 1 0.6239 -2.5567 0.8903 34 1 2.5116 -3.5375 -2.0727 35 1 3.5889 -4.6446 -1.1882 36 1 2.8243 -6.8443 -0.5099 37 1 1.2721 -8.7050 -0.9480 38 1 -0.7922 -8.3101 -2.2307 39 1 -1.3092 -6.0526 -3.0671 40 1 0.2384 -4.1900 -2.6209 41 1 0.1951 -3.7892 2.0629 42 1 1.0006 -5.1082 2.9459 43 1 0.3720 -2.3391 4.0661 44 1 -0.5177 -3.8357 4.4373 45 1 1.1389 -3.3218 6.2095 46 1 1.5517 -4.8352 5.3679 47 1 3.5572 -3.4086 5.6688 48 1 2.7516 -2.0896 4.7854 49 1 6.5337 -2.9873 3.7305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036563349.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:40 Heat of formation + Delta-G solvation = -139.759843 kcal Electronic energy + Delta-G solvation = -32278.602767 eV Core-core repulsion = 28168.714273 eV Total energy + Delta-G solvation = -4109.888494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.05297 -40.72188 -39.81922 -38.40247 -37.06660 -36.73506 -34.69501 -33.03352 -32.28269 -31.76515 -31.63284 -29.24128 -27.33833 -25.61857 -24.94251 -23.95377 -23.34999 -22.59914 -21.96646 -20.87999 -19.84771 -18.92986 -18.67764 -17.94339 -17.80329 -17.56566 -17.02649 -16.59577 -16.31397 -16.27253 -15.87776 -15.68709 -15.35533 -14.85943 -14.76444 -14.58512 -14.27490 -14.12906 -14.01465 -13.83527 -13.66193 -13.48757 -13.28868 -13.15818 -13.04202 -12.78411 -12.63318 -12.48478 -12.38157 -12.26814 -12.15605 -12.00415 -11.86575 -11.80146 -11.67440 -11.47948 -11.32381 -11.11195 -10.67396 -10.47506 -9.80268 -9.67897 -9.42468 -8.20683 -6.32527 0.40341 0.51904 1.30223 1.35989 1.36368 1.45269 1.85391 2.12928 2.31903 2.43667 2.99907 3.08061 3.48114 3.60163 3.86177 3.90248 3.93209 4.09163 4.16241 4.18192 4.28011 4.31233 4.35173 4.41069 4.44118 4.48290 4.59668 4.60151 4.74706 4.76545 4.86205 4.92781 4.94291 5.10769 5.11337 5.13887 5.16501 5.18935 5.25378 5.28511 5.38764 5.53409 5.59041 5.61497 5.64031 5.67111 5.75831 5.85621 6.09476 6.13748 6.58365 6.84287 7.03886 7.32362 7.44177 8.84170 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007495 B = 0.005473 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3735.137260 B = 5114.668166 C = 6961.041630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.029 3.971 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.273 1.273 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.039 0.961 9 C 0.257 3.743 10 N -0.592 5.592 11 C 0.155 3.845 12 C -0.109 4.109 13 C -0.114 4.114 14 C -0.125 4.125 15 C -0.117 4.117 16 C -0.124 4.124 17 C -0.118 4.118 18 C 0.535 3.465 19 O -0.595 6.595 20 C -0.089 4.089 21 H 0.085 0.915 22 C -0.101 4.101 23 C -0.117 4.117 24 C -0.109 4.109 25 C -0.106 4.106 26 C -0.055 4.055 27 H 0.120 0.880 28 C 0.481 3.519 29 O -0.544 6.544 30 O -0.508 6.508 31 H 0.268 0.732 32 H 0.020 0.980 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.144 0.856 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.058 0.942 49 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 -12.115 7.400 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.171 4.171 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.057 0.943 9 C 0.136 3.864 10 N -0.321 5.321 11 C 0.032 3.968 12 C -0.111 4.111 13 C -0.133 4.133 14 C -0.143 4.143 15 C -0.135 4.135 16 C -0.142 4.142 17 C -0.136 4.136 18 C 0.325 3.675 19 O -0.478 6.478 20 C -0.110 4.110 21 H 0.103 0.897 22 C -0.138 4.138 23 C -0.154 4.154 24 C -0.146 4.146 25 C -0.143 4.143 26 C -0.074 4.074 27 H 0.138 0.862 28 C 0.324 3.676 29 O -0.433 6.433 30 O -0.321 6.321 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.162 0.838 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.132 0.868 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.118 0.882 48 H 0.077 0.923 49 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -0.548 -12.395 7.213 14.352 hybrid contribution 1.363 1.840 -0.914 2.466 sum 0.816 -10.556 6.299 12.319 Atomic orbital electron populations 1.69980 1.06637 1.28042 1.50509 1.25470 0.95547 1.01536 0.94579 0.85816 0.78656 0.79922 0.78504 1.20294 1.19734 1.20488 1.21589 0.92788 0.92005 1.51546 0.94260 1.19120 0.87344 0.82337 0.97587 1.48089 1.44910 1.33546 1.05554 1.20181 0.96943 0.92903 0.86732 1.20231 0.96839 0.94838 0.99152 1.21163 1.00132 0.92736 0.99234 1.21411 0.94604 0.99207 0.99050 1.21498 0.97189 0.97492 0.97308 1.21420 0.99649 0.92812 1.00296 1.21206 0.94094 0.99677 0.98658 1.20569 0.79913 0.80761 0.86264 1.90496 1.33828 1.35369 1.88137 1.21165 0.96828 1.02267 0.90753 0.89662 1.21477 0.92784 1.00388 0.99188 1.21563 0.99962 1.00660 0.93222 1.21547 0.92353 1.02095 0.98588 1.21608 0.99429 1.00080 0.93200 1.20923 0.86302 1.02932 0.97253 0.86216 1.23790 0.87495 0.75837 0.80459 1.90788 1.85391 1.40353 1.26795 1.84446 1.21970 1.74324 1.51364 0.92263 0.96222 0.94455 0.90671 0.91394 0.87207 0.83813 0.82885 0.83803 0.86845 0.92412 0.90749 0.92826 0.89391 0.88854 0.89989 0.88214 0.92326 0.71848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.84 13.29 21.45 0.28 -50.55 16 2 C 0.03 1.61 5.46 84.65 0.46 2.07 16 3 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.54 -30.18 8.55 25.60 0.22 -29.96 16 8 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 9 C 0.26 12.91 4.79 85.63 0.41 13.32 16 10 N -0.59 -27.17 2.46 -830.47 -2.04 -29.22 16 11 C 0.16 6.51 5.54 85.63 0.47 6.98 16 12 C -0.11 -3.96 5.46 -19.87 -0.11 -4.07 16 13 C -0.11 -3.76 9.70 22.27 0.22 -3.54 16 14 C -0.12 -3.24 10.05 22.27 0.22 -3.02 16 15 C -0.12 -2.72 10.05 22.27 0.22 -2.49 16 16 C -0.12 -3.26 10.05 22.27 0.22 -3.04 16 17 C -0.12 -3.89 9.70 22.27 0.22 -3.67 16 18 C 0.53 23.79 5.35 87.66 0.47 24.26 16 19 O -0.60 -27.69 14.47 9.09 0.13 -27.56 16 20 C -0.09 -3.42 0.87 -11.54 -0.01 -3.43 16 21 H 0.09 3.92 6.62 -2.38 -0.02 3.91 16 22 C -0.10 -3.22 4.93 30.59 0.15 -3.07 16 23 C -0.12 -2.91 5.92 30.60 0.18 -2.73 16 24 C -0.11 -2.12 5.92 30.60 0.18 -1.94 16 25 C -0.11 -2.52 5.14 30.61 0.16 -2.37 16 26 C -0.05 -1.75 1.79 -11.53 -0.02 -1.77 16 27 H 0.12 3.60 7.93 -2.39 -0.02 3.58 16 28 C 0.48 17.34 6.84 71.24 0.49 17.83 16 29 O -0.54 -25.17 15.36 26.63 0.41 -24.76 16 30 O -0.51 -13.58 13.33 -51.38 -0.68 -14.26 16 31 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.02 1.04 8.02 -2.38 -0.02 1.02 16 33 H 0.04 1.91 4.88 -2.39 -0.01 1.90 16 34 H 0.07 3.16 8.02 -2.39 -0.02 3.14 16 35 H 0.07 2.94 7.30 -2.38 -0.02 2.92 16 36 H 0.11 3.88 7.84 -2.91 -0.02 3.86 16 37 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.11 3.88 8.06 -2.91 -0.02 3.86 16 41 H 0.06 2.11 6.18 -2.39 -0.01 2.09 16 42 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.10 1.92 8.11 -2.39 -0.02 1.90 16 48 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 49 H 0.42 7.97 9.10 -74.06 -0.67 7.30 16 Total: -1.00 -72.18 397.07 4.57 -67.61 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: 0.28 Total: 32.94 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.16 Total: -0.63 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.76 Total: -79.77 kcal Atomic # 8 Polarization: -66.44 SS G_CDS: -0.14 Total: -66.58 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -72.18 4.57 -67.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036563349.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.146 kcal (2) G-P(sol) polarization free energy of solvation -72.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds