Wall clock time and date at job start Tue Mar 31 2020 07:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99517 * 2 1 4 4 H 1.48502 * 109.46763 * 269.99575 * 3 2 1 5 5 H 1.48498 * 109.47303 * 30.00054 * 3 2 1 6 6 H 1.48501 * 109.46877 * 150.00047 * 3 2 1 7 7 C 1.37879 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99679 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99719 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.46807 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99943 * 274.46544 * 10 9 7 12 12 C 1.50698 * 109.47421 * 270.00290 * 11 10 9 13 13 C 1.38237 * 119.99657 * 269.72566 * 12 11 10 14 14 C 1.38234 * 119.99393 * 179.76613 * 13 12 11 15 15 C 1.38235 * 120.00478 * 0.48828 * 14 13 12 16 16 C 1.38237 * 119.99749 * 359.78381 * 15 14 13 17 17 C 1.38232 * 119.99960 * 359.96425 * 16 15 14 18 18 C 1.34777 * 120.00163 * 94.46943 * 10 9 7 19 19 O 1.21278 * 120.00029 * 185.55588 * 18 10 9 20 20 C 1.50697 * 119.99633 * 5.55592 * 18 10 9 21 21 H 1.08994 * 109.47475 * 25.80914 * 20 18 10 22 22 C 1.53004 * 109.46897 * 265.80058 * 20 18 10 23 23 C 1.53007 * 109.46747 * 180.02562 * 22 20 18 24 24 C 1.52994 * 109.47111 * 60.00665 * 23 22 20 25 25 C 1.53001 * 109.47199 * 299.99625 * 24 23 22 26 26 C 1.52997 * 109.47108 * 59.99966 * 25 24 23 27 27 H 1.08999 * 109.47001 * 60.00304 * 26 25 24 28 28 C 1.50704 * 109.47401 * 180.02562 * 26 25 24 29 29 O 1.20821 * 119.99894 * 119.99796 * 28 26 25 30 30 O 1.34232 * 119.99570 * 300.00323 * 28 26 25 31 31 H 0.96994 * 120.00520 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47438 * 60.00391 * 9 7 2 33 33 H 1.09004 * 109.47371 * 299.99854 * 9 7 2 34 34 H 1.09006 * 109.46868 * 30.00272 * 11 10 9 35 35 H 1.09003 * 109.47112 * 149.99743 * 11 10 9 36 36 H 1.07997 * 119.99946 * 359.97438 * 13 12 11 37 37 H 1.08008 * 120.00129 * 180.25142 * 14 13 12 38 38 H 1.07994 * 120.00546 * 179.77207 * 15 14 13 39 39 H 1.08001 * 119.99938 * 179.97438 * 16 15 14 40 40 H 1.08002 * 120.00437 * 179.97438 * 17 16 15 41 41 H 1.08999 * 109.47404 * 300.00358 * 22 20 18 42 42 H 1.09003 * 109.47052 * 60.01050 * 22 20 18 43 43 H 1.08999 * 109.47333 * 300.00245 * 23 22 20 44 44 H 1.09002 * 109.46917 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.47063 * 179.97438 * 24 23 22 46 46 H 1.08999 * 109.47364 * 59.99599 * 24 23 22 47 47 H 1.08997 * 109.47144 * 180.02562 * 25 24 23 48 48 H 1.08999 * 109.46941 * 300.00233 * 25 24 23 49 49 H 0.96705 * 116.99607 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 4.1506 -3.2989 1.2658 12 6 5.5375 -3.0748 1.8108 13 6 6.5623 -3.9372 1.4684 14 6 7.8356 -3.7288 1.9645 15 6 8.0820 -2.6641 2.8110 16 6 7.0560 -1.8050 3.1578 17 6 5.7839 -2.0103 2.6576 18 6 4.3108 -3.1798 -1.1627 19 8 4.6184 -4.3529 -1.1732 20 6 4.2763 -2.3983 -2.4507 21 1 4.4388 -1.3416 -2.2390 22 6 2.9132 -2.5806 -3.1214 23 6 2.8784 -1.7876 -4.4294 24 6 3.9784 -2.2960 -5.3635 25 6 5.3414 -2.1139 -4.6928 26 6 5.3763 -2.9068 -3.3848 27 1 5.2137 -3.9636 -3.5962 28 6 6.7187 -2.7269 -2.7239 29 8 6.7881 -2.2421 -1.6194 30 8 7.8371 -3.1053 -3.3624 31 1 -0.4850 0.8399 -0.0004 32 1 3.8745 -0.6799 0.8911 33 1 3.8752 -0.6802 -0.8889 34 1 3.4151 -2.9341 1.9829 35 1 3.9947 -4.3642 1.0955 36 1 6.3687 -4.7716 0.8107 37 1 8.6372 -4.4002 1.6939 38 1 9.0760 -2.5034 3.2015 39 1 7.2484 -0.9734 3.8194 40 1 4.9821 -1.3394 2.9288 41 1 2.7508 -3.6374 -3.3331 42 1 2.1295 -2.2187 -2.4558 43 1 3.0410 -0.7307 -4.2181 44 1 1.9072 -1.9170 -4.9070 45 1 3.9533 -1.7314 -6.2955 46 1 3.8158 -3.3529 -5.5748 47 1 6.1251 -2.4757 -5.3584 48 1 5.5040 -1.0570 -4.4815 49 1 8.6747 -2.9704 -2.8981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036563351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:46 Heat of formation + Delta-G solvation = -116.679099 kcal Electronic energy + Delta-G solvation = -32559.266701 eV Core-core repulsion = 28450.379063 eV Total energy + Delta-G solvation = -4108.887638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.76416 -39.37364 -38.58121 -37.17400 -35.90027 -35.11945 -32.73371 -31.67659 -31.14377 -30.55812 -30.43981 -27.98256 -26.02629 -24.30642 -22.98460 -22.58873 -22.04441 -21.29912 -20.85313 -19.73818 -18.25062 -17.77272 -17.09754 -16.61338 -16.49258 -16.32931 -15.58731 -15.35937 -14.98453 -14.60954 -14.40661 -14.33437 -14.00620 -13.69440 -13.48239 -13.29051 -13.09290 -12.80961 -12.70812 -12.47086 -12.31626 -12.10845 -11.94283 -11.90435 -11.43402 -11.37583 -11.24011 -11.13255 -10.98595 -10.86896 -10.70723 -10.64328 -10.52340 -10.38159 -10.24418 -10.07898 -9.94112 -9.60676 -9.04508 -8.71301 -8.57460 -8.37554 -7.69715 -6.22293 -4.22827 1.64869 1.75014 2.44821 3.16473 3.16914 3.25808 3.28737 3.39354 3.78777 4.26499 4.27613 4.68152 4.84323 4.91707 5.08356 5.16396 5.18448 5.27614 5.28889 5.35359 5.44920 5.46954 5.48442 5.53306 5.63946 5.65198 5.76055 5.84977 5.92007 5.98632 6.05267 6.14298 6.19472 6.22730 6.24035 6.36548 6.38113 6.40511 6.51137 6.61737 6.65990 6.74120 6.79288 6.79795 6.84976 7.03686 7.33307 7.35950 7.46806 8.07517 8.16273 8.43890 8.82204 8.96409 9.38090 10.89932 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007482 B = 0.006512 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3741.528928 B = 4298.867993 C = 6816.430731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.080 3.920 3 Si 0.863 3.137 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.209 3.791 10 N -0.575 5.575 11 C 0.156 3.844 12 C -0.089 4.089 13 C -0.090 4.090 14 C -0.127 4.127 15 C -0.126 4.126 16 C -0.128 4.128 17 C -0.103 4.103 18 C 0.540 3.460 19 O -0.577 6.577 20 C -0.089 4.089 21 H 0.101 0.899 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.109 4.109 26 C -0.062 4.062 27 H 0.116 0.884 28 C 0.478 3.522 29 O -0.496 6.496 30 O -0.520 6.520 31 H 0.266 0.734 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.128 -3.610 -5.193 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.124 4.124 3 Si 0.690 3.310 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.098 0.902 9 C 0.088 3.912 10 N -0.303 5.303 11 C 0.033 3.967 12 C -0.090 4.090 13 C -0.108 4.108 14 C -0.145 4.145 15 C -0.144 4.144 16 C -0.146 4.146 17 C -0.122 4.122 18 C 0.329 3.671 19 O -0.459 6.459 20 C -0.110 4.110 21 H 0.119 0.881 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.146 4.146 26 C -0.082 4.082 27 H 0.134 0.866 28 C 0.320 3.680 29 O -0.382 6.382 30 O -0.332 6.332 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 12.723 -3.985 -5.066 14.262 hybrid contribution 1.008 1.266 0.440 1.677 sum 13.731 -2.719 -4.626 14.742 Atomic orbital electron populations 1.69879 1.06120 1.27130 1.49574 1.24815 0.94632 0.98647 0.94289 0.87037 0.80665 0.84271 0.79046 1.19810 1.20894 1.18784 1.21361 0.88945 0.94948 1.52256 0.90201 1.19848 0.95487 0.78261 0.97612 1.47699 1.62695 1.15586 1.04316 1.20221 0.92160 0.98095 0.86259 1.20364 0.96794 0.95201 0.96627 1.21092 0.92446 0.99217 0.98072 1.21028 0.96721 0.98236 0.98542 1.21018 0.98590 0.95775 0.99010 1.21047 0.93270 0.99461 1.00786 1.21138 0.97019 0.96982 0.97038 1.20044 0.75282 0.86669 0.85094 1.90552 1.51454 1.16597 1.87261 1.21210 0.95572 1.01772 0.92440 0.88124 1.21542 0.95556 1.00744 0.97003 1.21550 0.98471 1.00280 0.95332 1.21567 0.93940 1.01718 0.98294 1.21533 0.98808 1.00077 0.94218 1.20964 0.87313 1.03989 0.95906 0.86601 1.23554 0.86408 0.73868 0.84211 1.90788 1.87167 1.40281 1.19939 1.84522 1.17837 1.78871 1.51990 0.92397 0.95198 0.94982 0.89329 0.89914 0.86154 0.86900 0.86863 0.86598 0.86012 0.91761 0.87969 0.91575 0.91354 0.91587 0.91591 0.90616 0.91403 0.73863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 13.96 55.43 0.77 -24.39 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.86 19.76 27.47 -169.99 -4.67 15.10 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 7 C -0.54 -13.73 8.92 -34.44 -0.31 -14.04 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.21 4.71 4.19 -5.19 -0.02 4.69 16 10 N -0.58 -12.11 2.44 -176.43 -0.43 -12.54 16 11 C 0.16 3.01 5.60 -5.19 -0.03 2.98 16 12 C -0.09 -1.60 5.46 -104.62 -0.57 -2.17 16 13 C -0.09 -1.55 9.70 -39.58 -0.38 -1.93 16 14 C -0.13 -1.91 10.05 -39.58 -0.40 -2.30 16 15 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 16 C -0.13 -1.90 10.05 -39.58 -0.40 -2.29 16 17 C -0.10 -1.74 9.70 -39.58 -0.38 -2.12 16 18 C 0.54 11.08 4.90 -10.99 -0.05 11.02 16 19 O -0.58 -12.56 15.50 5.56 0.09 -12.47 16 20 C -0.09 -1.57 1.14 -91.77 -0.10 -1.68 16 21 H 0.10 1.90 5.71 -51.93 -0.30 1.60 16 22 C -0.11 -1.85 5.19 -26.73 -0.14 -1.99 16 23 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 24 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 25 C -0.11 -1.28 5.14 -26.73 -0.14 -1.42 16 26 C -0.06 -0.93 1.85 -91.77 -0.17 -1.10 16 27 H 0.12 1.74 7.85 -51.93 -0.41 1.33 16 28 C 0.48 7.49 7.23 36.01 0.26 7.75 16 29 O -0.50 -9.39 15.55 -18.75 -0.29 -9.69 16 30 O -0.52 -6.32 13.33 -39.26 -0.52 -6.84 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.03 0.69 7.16 -51.93 -0.37 0.31 16 33 H 0.03 0.72 4.93 -51.93 -0.26 0.47 16 34 H 0.09 1.68 8.02 -51.93 -0.42 1.26 16 35 H 0.08 1.60 7.29 -51.93 -0.38 1.22 16 36 H 0.12 2.16 7.88 -52.49 -0.41 1.75 16 37 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.10 2.04 7.09 -51.93 -0.37 1.67 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.40 3.31 9.10 45.56 0.41 3.73 16 LS Contribution 396.07 15.07 5.97 5.97 Total: -1.00 -31.51 396.07 -9.47 -40.97 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.73 Total: 11.87 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -3.65 Total: -7.98 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.34 Total: -36.93 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.73 Total: -29.00 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.67 Total: 15.10 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.51 -9.47 -40.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036563351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.704 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds