Wall clock time and date at job start Tue Mar 31 2020 07:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00134 * 2 1 4 4 H 1.48497 * 109.46754 * 269.99650 * 3 2 1 5 5 H 1.48497 * 109.46938 * 29.99972 * 3 2 1 6 6 H 1.48495 * 109.46917 * 149.99515 * 3 2 1 7 7 C 1.37878 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99850 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47002 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00112 * 84.94377 * 10 9 7 12 12 C 1.50703 * 109.47465 * 89.99738 * 11 10 9 13 13 C 1.38232 * 119.99708 * 89.99543 * 12 11 10 14 14 C 1.38235 * 119.99962 * 179.97438 * 13 12 11 15 15 C 1.38227 * 119.99925 * 0.02878 * 14 13 12 16 16 C 1.38235 * 120.00092 * 0.25380 * 15 14 13 17 17 C 1.38234 * 119.99912 * 269.98535 * 12 11 10 18 18 C 1.34772 * 120.00031 * 264.94181 * 10 9 7 19 19 O 1.21280 * 120.00403 * 185.11698 * 18 10 9 20 20 C 1.50709 * 119.99937 * 5.11844 * 18 10 9 21 21 H 1.08996 * 109.46786 * 315.53898 * 20 18 10 22 22 C 1.52998 * 109.47037 * 75.53885 * 20 18 10 23 23 C 1.53000 * 109.47081 * 59.99984 * 22 20 18 24 24 C 1.53002 * 109.46823 * 60.00146 * 23 22 20 25 25 C 1.52997 * 109.47008 * 299.99444 * 24 23 22 26 26 C 1.52997 * 109.47120 * 195.53920 * 20 18 10 27 27 H 1.08997 * 109.46849 * 179.97438 * 26 20 18 28 28 C 1.50699 * 109.47083 * 59.99749 * 26 20 18 29 29 O 1.20827 * 120.00164 * 0.02562 * 28 26 20 30 30 O 1.34234 * 120.00007 * 179.97438 * 28 26 20 31 31 H 0.97006 * 119.99545 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47325 * 59.99735 * 9 7 2 33 33 H 1.09004 * 109.46988 * 299.99864 * 9 7 2 34 34 H 1.09009 * 109.46754 * 329.99894 * 11 10 9 35 35 H 1.09001 * 109.47058 * 210.00136 * 11 10 9 36 36 H 1.08004 * 120.00353 * 359.97438 * 13 12 11 37 37 H 1.08000 * 119.99932 * 180.02562 * 14 13 12 38 38 H 1.08005 * 120.00408 * 179.97438 * 15 14 13 39 39 H 1.08008 * 120.00012 * 179.72623 * 16 15 14 40 40 H 1.07991 * 120.00240 * 359.97438 * 17 12 11 41 41 H 1.08997 * 109.46980 * 180.02562 * 22 20 18 42 42 H 1.09002 * 109.47018 * 300.00012 * 22 20 18 43 43 H 1.08996 * 109.47213 * 299.99606 * 23 22 20 44 44 H 1.09007 * 109.46659 * 179.97438 * 23 22 20 45 45 H 1.09002 * 109.46641 * 179.97438 * 24 23 22 46 46 H 1.09001 * 109.47115 * 60.00178 * 24 23 22 47 47 H 1.08996 * 109.47148 * 300.00613 * 25 24 23 48 48 H 1.09002 * 109.46852 * 180.02562 * 25 24 23 49 49 H 0.96704 * 116.99878 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7639 -4.0968 1.2643 12 6 1.8805 -5.1825 1.8229 13 6 2.1089 -6.5027 1.4828 14 6 1.2990 -7.4986 1.9956 15 6 0.2604 -7.1743 2.8481 16 6 0.0283 -5.8535 3.1836 17 6 0.8420 -4.8581 2.6757 18 6 2.5626 -4.1918 -1.1621 19 8 3.2773 -5.1716 -1.1560 20 6 2.0768 -3.6217 -2.4698 21 1 1.0160 -3.3838 -2.3907 22 6 2.8619 -2.3494 -2.7946 23 6 4.3509 -2.6833 -2.9056 24 6 4.5614 -3.7108 -4.0196 25 6 3.7763 -4.9832 -3.6947 26 6 2.2873 -4.6492 -3.5837 27 1 1.9355 -4.2370 -4.5294 28 6 1.5140 -5.9025 -3.2638 29 8 0.8610 -5.9670 -2.2492 30 8 1.5497 -6.9467 -4.1064 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8897 33 1 0.6240 -2.5567 0.8903 34 1 2.8211 -3.2729 1.9757 35 1 3.7631 -4.4956 1.0891 36 1 2.9202 -6.7561 0.8164 37 1 1.4777 -8.5301 1.7302 38 1 -0.3728 -7.9523 3.2485 39 1 -0.7860 -5.5996 3.8462 40 1 0.6640 -3.8267 2.9418 41 1 2.5102 -1.9368 -3.7402 42 1 2.7119 -1.6173 -2.0010 43 1 4.7023 -3.0956 -1.9598 44 1 4.9102 -1.7768 -3.1375 45 1 5.6222 -3.9484 -4.0989 46 1 4.2100 -3.2984 -4.9654 47 1 4.1277 -5.3954 -2.7489 48 1 3.9266 -5.7154 -4.4881 49 1 1.0373 -7.7285 -3.8587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036563353.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:52 Heat of formation + Delta-G solvation = -113.303510 kcal Electronic energy + Delta-G solvation = -32714.779230 eV Core-core repulsion = 28606.037968 eV Total energy + Delta-G solvation = -4108.741261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.81114 -39.29873 -38.56971 -36.63431 -35.76899 -35.03219 -32.80015 -31.57078 -30.95643 -30.46991 -30.16189 -27.40750 -25.91273 -24.16333 -23.03694 -22.55993 -22.04838 -21.21717 -20.73141 -20.06469 -17.87588 -17.61088 -16.84066 -16.49593 -16.29699 -16.07377 -15.25943 -15.19293 -14.91906 -14.67063 -14.54160 -14.19777 -13.98544 -13.41044 -13.35266 -13.10400 -12.99343 -12.53987 -12.39469 -12.25491 -12.17511 -12.02144 -11.87509 -11.77592 -11.34068 -11.27111 -11.15264 -10.99627 -10.89997 -10.74611 -10.62663 -10.50427 -10.44738 -10.33063 -10.12241 -9.81622 -9.69685 -9.63821 -8.73258 -8.57185 -8.49040 -8.24098 -7.66235 -6.21144 -4.27518 1.72628 1.83338 2.60519 3.19177 3.27683 3.29754 3.33029 3.53547 3.89378 4.28098 4.38826 4.88041 5.06811 5.10721 5.16341 5.25705 5.26468 5.37263 5.43877 5.53038 5.55948 5.61231 5.70143 5.75118 5.81235 5.84000 5.91898 5.93870 6.06543 6.16032 6.20841 6.27735 6.38432 6.42705 6.47914 6.49033 6.55597 6.63986 6.77489 6.78619 6.85654 6.88075 6.93118 7.11379 7.12706 7.26261 7.42333 7.57769 7.73504 8.03416 8.22679 8.41904 8.77495 9.10672 9.38269 10.84732 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007508 B = 0.006199 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3728.530092 B = 4515.916307 C = 7182.478682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.238 3.762 10 N -0.585 5.585 11 C 0.159 3.841 12 C -0.092 4.092 13 C -0.090 4.090 14 C -0.130 4.130 15 C -0.127 4.127 16 C -0.129 4.129 17 C -0.102 4.102 18 C 0.544 3.456 19 O -0.570 6.570 20 C -0.086 4.086 21 H 0.099 0.901 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.112 4.112 25 C -0.132 4.132 26 C -0.057 4.057 27 H 0.103 0.897 28 C 0.483 3.517 29 O -0.501 6.501 30 O -0.522 6.522 31 H 0.265 0.735 32 H 0.039 0.961 33 H 0.033 0.967 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.062 0.938 42 H 0.124 0.876 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.116 0.884 48 H 0.060 0.940 49 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.689 -9.647 -3.656 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.118 3.882 10 N -0.314 5.314 11 C 0.036 3.964 12 C -0.093 4.093 13 C -0.108 4.108 14 C -0.148 4.148 15 C -0.145 4.145 16 C -0.147 4.147 17 C -0.120 4.120 18 C 0.333 3.667 19 O -0.453 6.453 20 C -0.107 4.107 21 H 0.117 0.883 22 C -0.166 4.166 23 C -0.158 4.158 24 C -0.150 4.150 25 C -0.169 4.169 26 C -0.077 4.077 27 H 0.121 0.879 28 C 0.325 3.675 29 O -0.387 6.387 30 O -0.334 6.334 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.141 0.859 41 H 0.080 0.920 42 H 0.142 0.858 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.134 0.866 48 H 0.078 0.922 49 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.921 -9.641 -3.451 10.965 hybrid contribution -0.351 0.489 0.082 0.607 sum 3.570 -9.153 -3.369 10.386 Atomic orbital electron populations 1.69936 1.06016 1.27304 1.49097 1.24944 0.94789 0.99150 0.94777 0.86594 0.79933 0.83198 0.78404 1.20354 1.21136 1.19724 1.21437 0.93594 0.90366 1.51934 0.91719 1.19459 0.87586 0.82460 0.98730 1.48083 1.44939 1.34308 1.04052 1.20184 0.95274 0.94496 0.86469 1.20386 0.97312 0.94964 0.96664 1.21151 0.99419 0.92346 0.97895 1.21051 0.96354 0.98920 0.98495 1.21031 0.98127 0.96268 0.99077 1.21059 0.99654 0.93052 1.00915 1.21162 0.94560 0.99435 0.96865 1.19993 0.79136 0.82200 0.85335 1.90362 1.40605 1.27260 1.87054 1.21114 1.02789 0.95234 0.91544 0.88267 1.21910 0.93497 0.96648 1.04520 1.21553 0.96953 0.98275 0.98978 1.21499 0.99424 0.95580 0.98479 1.22006 0.91352 0.98075 1.05431 1.20896 0.96933 0.89455 1.00374 0.87929 1.23525 0.78860 0.84628 0.80480 1.90750 1.40110 1.81856 1.25957 1.84527 1.69627 1.26649 1.52611 0.92481 0.94277 0.94858 0.89628 0.90448 0.85811 0.86914 0.86895 0.86581 0.85877 0.91971 0.85815 0.91810 0.92181 0.92241 0.92559 0.86601 0.92165 0.74044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.52 13.29 55.43 0.74 -22.79 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 19.53 29.54 -169.99 -5.02 14.51 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.53 -12.90 6.68 -34.44 -0.23 -13.13 16 8 H 0.06 1.57 7.61 -52.49 -0.40 1.17 16 9 C 0.24 5.51 4.82 -5.19 -0.03 5.49 16 10 N -0.59 -12.16 2.44 -176.42 -0.43 -12.59 16 11 C 0.16 3.01 5.51 -5.19 -0.03 2.98 16 12 C -0.09 -1.68 5.46 -104.62 -0.57 -2.25 16 13 C -0.09 -1.58 9.57 -39.58 -0.38 -1.96 16 14 C -0.13 -2.04 10.05 -39.59 -0.40 -2.44 16 15 C -0.13 -1.87 10.05 -39.59 -0.40 -2.27 16 16 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 17 C -0.10 -1.77 9.70 -39.58 -0.38 -2.15 16 18 C 0.54 10.92 4.13 -10.98 -0.05 10.87 16 19 O -0.57 -11.70 11.07 -8.12 -0.09 -11.79 16 20 C -0.09 -1.56 1.43 -91.77 -0.13 -1.70 16 21 H 0.10 1.99 6.34 -51.93 -0.33 1.66 16 22 C -0.13 -2.22 5.36 -26.73 -0.14 -2.36 16 23 C -0.12 -1.86 5.70 -26.73 -0.15 -2.01 16 24 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 25 C -0.13 -1.94 4.86 -26.73 -0.13 -2.07 16 26 C -0.06 -0.90 2.38 -91.77 -0.22 -1.11 16 27 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 28 C 0.48 8.07 6.84 36.01 0.25 8.31 16 29 O -0.50 -10.14 15.34 -23.87 -0.37 -10.51 16 30 O -0.52 -6.86 13.33 -39.27 -0.52 -7.38 16 31 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.04 0.97 5.89 -51.93 -0.31 0.67 16 33 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 34 H 0.09 1.58 8.02 -51.92 -0.42 1.16 16 35 H 0.08 1.43 7.44 -51.93 -0.39 1.04 16 36 H 0.12 2.27 7.38 -52.48 -0.39 1.88 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 40 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.12 2.51 4.54 -51.93 -0.24 2.27 16 43 H 0.06 1.11 7.15 -51.93 -0.37 0.74 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.12 2.01 5.02 -51.93 -0.26 1.75 16 48 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 49 H 0.40 3.65 9.10 45.56 0.41 4.06 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -29.23 386.25 -9.98 -39.20 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -6.46 Total: 13.80 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.64 Total: -8.27 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.31 Total: -35.38 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.98 Total: -29.68 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.23 -9.98 -39.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036563353.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.099 kcal (2) G-P(sol) polarization free energy of solvation -29.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds