Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86798 * 119.99583 * 2 1 4 4 H 1.48496 * 109.47359 * 240.00012 * 3 2 1 5 5 H 1.48498 * 109.47594 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46858 * 120.00281 * 3 2 1 7 7 C 1.38767 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99604 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99931 * 0.27763 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72349 * 9 7 2 11 11 N 1.30661 * 119.02288 * 359.73074 * 10 9 7 12 12 C 1.36286 * 121.68391 * 179.72494 * 11 10 9 13 13 C 1.39673 * 128.88725 * 180.18982 * 12 11 10 14 14 C 1.34065 * 115.60788 * 180.32336 * 13 12 11 15 15 C 1.47874 * 124.78020 * 180.02562 * 14 13 12 16 16 C 1.39554 * 120.13797 * 359.72120 * 15 14 13 17 17 C 1.37965 * 119.85184 * 179.77318 * 16 15 14 18 18 C 1.38362 * 120.14308 * 0.50404 * 17 16 15 19 19 C 1.38347 * 120.28491 * 359.75097 * 18 17 16 20 20 C 1.37968 * 120.14833 * 359.97438 * 19 18 17 21 21 S 1.75562 * 110.44111 * 0.02562 * 14 13 12 22 22 C 1.39389 * 118.35599 * 0.53242 * 12 11 10 23 23 C 1.41427 * 119.21735 * 359.74483 * 22 12 11 24 24 O 1.21976 * 120.57467 * 180.02562 * 23 22 12 25 25 N 1.34857 * 118.85123 * 0.02562 * 23 22 12 26 26 N 1.36607 * 120.02907 * 179.97438 * 25 23 22 27 27 H 0.96996 * 120.00417 * 359.97438 * 1 2 3 28 28 H 1.07995 * 122.20014 * 0.30509 * 13 12 11 29 29 H 1.07993 * 120.07542 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.92952 * 180.27848 * 17 16 15 31 31 H 1.07999 * 119.85412 * 179.72036 * 18 17 16 32 32 H 1.07999 * 119.92788 * 180.02562 * 19 18 17 33 33 H 1.08001 * 120.07432 * 180.02562 * 20 19 18 34 34 H 1.00892 * 110.99989 * 0.02677 * 26 25 23 35 35 H 1.00902 * 110.99765 * 123.97743 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1032 1.6966 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0094 -1.2018 -0.0005 8 1 3.0894 -1.2017 -0.0010 9 16 1.1284 -2.7277 -0.0086 10 6 2.4782 -3.8602 -0.0146 11 7 3.6982 -3.3924 -0.0175 12 6 4.7818 -4.2190 -0.0165 13 6 6.1383 -3.8864 -0.0156 14 6 6.9890 -4.9226 -0.0216 15 6 8.4630 -4.8040 -0.0214 16 6 9.0645 -3.5447 -0.0204 17 6 10.4403 -3.4409 -0.0154 18 6 11.2232 -4.5817 -0.0219 19 6 10.6329 -5.8329 -0.0283 20 6 9.2583 -5.9506 -0.0276 21 16 6.1065 -6.4403 -0.0299 22 6 4.5642 -5.5958 -0.0238 23 6 3.2372 -6.0850 -0.0263 24 8 3.0183 -7.2849 -0.0322 25 7 2.2181 -5.2018 -0.0221 26 7 0.9269 -5.6479 -0.0250 27 1 -0.4850 0.8400 0.0004 28 1 6.4797 -2.8619 -0.0107 29 1 8.4546 -2.6536 -0.0193 30 1 10.9071 -2.4670 -0.0100 31 1 12.2997 -4.4949 -0.0226 32 1 11.2496 -6.7195 -0.0330 33 1 8.7988 -6.9280 -0.0322 34 1 0.8927 -6.6562 -0.0298 35 1 0.4129 -5.2724 0.7580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036646148.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = 71.904450 kcal Electronic energy + Delta-G solvation = -23599.586677 eV Core-core repulsion = 20009.175845 eV Total energy + Delta-G solvation = -3590.410832 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 345.035 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.15107 -39.42053 -37.72204 -36.51985 -34.43304 -32.93207 -31.58436 -31.15784 -29.85583 -28.15210 -25.97469 -24.95201 -24.22284 -22.98828 -21.93116 -20.50759 -19.21798 -18.22835 -17.88464 -16.96024 -16.74487 -16.31149 -16.08899 -15.26578 -15.15746 -14.96993 -14.84653 -14.50956 -13.84748 -13.67722 -13.52965 -13.40709 -13.18063 -12.80562 -12.71075 -12.40357 -11.64547 -11.49744 -11.41636 -11.34002 -11.27454 -10.90347 -10.72992 -10.47766 -10.00743 -9.69998 -9.38903 -9.24555 -9.16938 -9.16190 -8.72952 -8.16342 -7.89784 -6.96299 -6.72095 -4.46666 0.18043 1.18816 1.19826 1.50828 1.90006 2.05704 2.34705 2.67129 2.80778 3.09249 3.10250 3.14595 3.66762 3.76000 3.97943 4.21873 4.53984 4.69839 4.75426 4.75835 4.86589 4.93733 5.09908 5.17597 5.27178 5.29093 5.42660 5.64243 5.78107 5.92222 6.11643 6.20483 6.28690 6.31834 6.41592 6.48967 6.73888 7.11098 7.20126 7.35752 8.18453 8.22860 8.32891 8.80857 10.34606 Molecular weight = 345.03amu Principal moments of inertia in cm(-1) A = 0.010844 B = 0.003672 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.347122 B = 7624.452171 C =10193.943608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.079 3.921 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.118 0.882 9 S 0.218 5.782 10 C 0.328 3.672 11 N -0.514 5.514 12 C 0.211 3.789 13 C -0.117 4.117 14 C -0.110 4.110 15 C -0.015 4.015 16 C -0.096 4.096 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.108 4.108 21 S 0.182 5.818 22 C -0.370 4.370 23 C 0.564 3.436 24 O -0.561 6.561 25 N -0.364 5.364 26 N -0.594 5.594 27 H 0.280 0.720 28 H 0.151 0.849 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.376 0.624 35 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.466 -6.840 1.313 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.132 4.132 3 Si 0.761 3.239 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.696 4.696 8 H 0.135 0.865 9 S 0.461 5.539 10 C -0.038 4.038 11 N -0.245 5.245 12 C 0.077 3.923 13 C -0.150 4.150 14 C -0.229 4.229 15 C -0.017 4.017 16 C -0.116 4.116 17 C -0.135 4.135 18 C -0.136 4.136 19 C -0.134 4.134 20 C -0.127 4.127 21 S 0.447 5.553 22 C -0.498 4.498 23 C 0.359 3.641 24 O -0.442 6.442 25 N -0.176 5.176 26 N -0.226 5.226 27 H 0.090 0.910 28 H 0.169 0.831 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.195 0.805 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 13.290 -7.955 0.613 15.501 hybrid contribution 1.207 1.322 0.884 1.996 sum 14.496 -6.633 1.496 16.012 Atomic orbital electron populations 1.69893 1.06287 1.29300 1.44548 1.25200 0.95181 1.00065 0.92754 0.85914 0.79169 0.79167 0.79688 1.19170 1.20631 1.19227 1.23633 0.98276 0.89336 1.58348 0.86458 1.83824 0.97751 0.95405 1.76940 1.26335 0.99754 0.83967 0.93726 1.69114 0.94610 1.31665 1.29129 1.18870 0.93425 0.87867 0.92122 1.19593 0.89635 1.00370 1.05396 1.22882 0.95847 0.97678 1.06486 1.18076 0.88588 0.94017 1.01061 1.21314 0.94985 0.96679 0.98670 1.21112 0.93416 0.98856 1.00067 1.21256 0.99963 0.92559 0.99854 1.21043 0.94314 0.97794 1.00291 1.21236 0.93919 0.97608 0.99924 1.83497 0.92749 1.04342 1.74674 1.24022 0.97791 0.98111 1.29863 1.16008 0.83934 0.85833 0.78320 1.90863 1.85089 1.13625 1.54616 1.45021 1.03211 1.06280 1.63089 1.60289 0.95107 1.17476 1.49715 0.91031 0.83138 0.85114 0.85543 0.85907 0.85662 0.85798 0.80522 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.17 13.22 55.49 0.73 -21.44 16 2 C 0.08 1.96 5.49 -17.47 -0.10 1.86 16 3 Si 0.94 19.37 29.55 -169.99 -5.02 14.34 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.55 -13.75 9.24 30.93 0.29 -13.46 16 8 H 0.12 2.98 6.51 -52.49 -0.34 2.64 16 9 S 0.22 4.89 20.50 -107.50 -2.20 2.69 16 10 C 0.33 7.10 7.82 -88.74 -0.69 6.41 16 11 N -0.51 -11.38 8.47 -11.16 -0.09 -11.47 16 12 C 0.21 4.21 6.97 -84.92 -0.59 3.62 16 13 C -0.12 -1.94 9.63 -40.51 -0.39 -2.33 16 14 C -0.11 -1.63 6.32 -37.11 -0.23 -1.86 16 15 C -0.02 -0.19 5.87 -104.97 -0.62 -0.81 16 16 C -0.10 -1.07 9.53 -39.19 -0.37 -1.44 16 17 C -0.12 -1.07 10.03 -39.64 -0.40 -1.46 16 18 C -0.12 -1.00 10.04 -39.50 -0.40 -1.39 16 19 C -0.12 -1.05 10.03 -39.64 -0.40 -1.44 16 20 C -0.11 -1.18 9.59 -39.19 -0.38 -1.55 16 21 S 0.18 2.89 22.14 -107.50 -2.38 0.51 16 22 C -0.37 -7.31 6.47 -37.94 -0.25 -7.56 16 23 C 0.56 11.75 7.57 -15.01 -0.11 11.63 16 24 O -0.56 -12.12 16.58 4.94 0.08 -12.04 16 25 N -0.36 -7.26 3.51 -14.77 -0.05 -7.31 16 26 N -0.59 -9.83 9.61 60.35 0.58 -9.25 16 27 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.15 2.23 6.79 -52.49 -0.36 1.87 16 29 H 0.13 1.34 6.69 -52.49 -0.35 0.99 16 30 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.12 1.25 7.24 -52.49 -0.38 0.87 16 34 H 0.38 5.71 7.66 -181.37 -1.39 4.33 16 35 H 0.36 5.16 8.58 -181.36 -1.56 3.60 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -29.61 335.46 -12.72 -42.33 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.78 Total: 6.38 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -4.64 Total: -9.79 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 1.17 Total: -49.47 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 16 Polarization: 7.79 SS G_CDS: -4.58 Total: 3.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.61 -12.72 -42.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036646148.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.230 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds