Wall clock time and date at job start Tue Mar 31 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48496 * 109.47305 * 274.99111 * 3 2 1 5 5 H 1.48504 * 109.46917 * 34.98601 * 3 2 1 6 6 H 1.48497 * 109.47366 * 154.98771 * 3 2 1 7 7 C 1.39901 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00168 * 147.61286 * 7 2 1 9 9 C 1.41152 * 120.00187 * 327.61533 * 7 2 1 10 10 C 1.40869 * 120.16520 * 157.95209 * 9 7 2 11 11 C 1.36372 * 119.82777 * 180.02562 * 10 9 7 12 12 C 1.39482 * 120.16950 * 0.02562 * 11 10 9 13 13 N 1.39234 * 119.83280 * 179.97438 * 12 11 10 14 14 C 1.34783 * 120.00048 * 37.75950 * 13 12 11 15 15 O 1.21279 * 119.99791 * 356.70151 * 14 13 12 16 16 C 1.50704 * 119.99700 * 176.69849 * 14 13 12 17 17 S 1.81398 * 109.46577 * 180.02562 * 16 14 13 18 18 C 1.81406 * 102.99983 * 179.97438 * 17 16 14 19 19 C 1.50692 * 109.47355 * 179.97438 * 18 17 16 20 20 C 1.38245 * 119.97633 * 269.72961 * 19 18 17 21 21 C 1.38204 * 120.02636 * 179.72529 * 20 19 18 22 22 C 1.38460 * 119.97286 * 0.56992 * 21 20 19 23 23 F 1.35098 * 120.02310 * 179.68255 * 22 21 20 24 24 C 1.38459 * 119.94867 * 359.70042 * 22 21 20 25 25 C 1.38206 * 119.97583 * 0.02562 * 24 22 21 26 26 C 1.39477 * 120.32989 * 0.25256 * 12 11 10 27 27 C 1.36369 * 120.17450 * 359.48138 * 26 12 11 28 28 H 0.97003 * 120.00001 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.08452 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.91741 * 179.97438 * 11 10 9 31 31 H 0.96997 * 120.00293 * 217.75652 * 13 12 11 32 32 H 1.08995 * 109.47111 * 60.00114 * 16 14 13 33 33 H 1.08996 * 109.46822 * 299.99791 * 16 14 13 34 34 H 1.09002 * 109.46758 * 300.00161 * 18 17 16 35 35 H 1.08999 * 109.46989 * 59.99504 * 18 17 16 36 36 H 1.08004 * 119.98678 * 359.97438 * 20 19 18 37 37 H 1.07998 * 120.01332 * 180.24870 * 21 20 19 38 38 H 1.08003 * 120.01432 * 179.97438 * 24 22 21 39 39 H 1.07995 * 119.98549 * 179.97438 * 25 24 22 40 40 H 1.08009 * 119.91021 * 179.74860 * 26 12 11 41 41 H 1.08002 * 120.09325 * 180.26078 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3847 2.1073 -1.3947 5 1 1.4968 2.6199 0.8028 6 1 3.5890 1.4121 0.5919 7 6 2.0082 -1.2116 -0.0005 8 1 2.9622 -1.2841 -0.5016 9 6 1.4671 -2.3392 0.6537 10 6 1.8853 -3.6352 0.2930 11 6 1.3576 -4.7198 0.9292 12 6 0.4058 -4.5486 1.9343 13 7 -0.1287 -5.6610 2.5789 14 6 0.6565 -6.7204 2.8574 15 8 1.8134 -6.7300 2.4937 16 6 0.0968 -7.8931 3.6208 17 16 1.3897 -9.1472 3.8356 18 6 0.5393 -10.4559 4.7603 19 6 1.4966 -11.5900 5.0212 20 6 1.6028 -12.6271 4.1133 21 6 2.4845 -13.6649 4.3488 22 6 3.2532 -13.6716 5.5004 23 9 4.1108 -14.6888 5.7348 24 6 3.1420 -12.6352 6.4118 25 6 2.2637 -11.5955 6.1714 26 6 -0.0174 -3.2688 2.2929 27 6 0.5051 -2.1743 1.6695 28 1 -0.4850 0.8401 -0.0004 29 1 2.6213 -3.7694 -0.4859 30 1 1.6769 -5.7141 0.6536 31 1 -1.0662 -5.6735 2.8276 32 1 -0.7378 -8.3224 3.0667 33 1 -0.2499 -7.5581 4.5983 34 1 0.1813 -10.0563 5.7091 35 1 -0.3064 -10.8214 4.1778 36 1 0.9993 -12.6243 3.2176 37 1 2.5702 -14.4729 3.6374 38 1 3.7408 -12.6395 7.3106 39 1 2.1765 -10.7873 6.8823 40 1 -0.7578 -3.1443 3.0693 41 1 0.1795 -1.1838 1.9511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038754734.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:38 Heat of formation + Delta-G solvation = -36.845811 kcal Electronic energy + Delta-G solvation = -24694.433224 eV Core-core repulsion = 20772.466889 eV Total energy + Delta-G solvation = -3921.966335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.22719 -39.63317 -39.46554 -37.26098 -34.50997 -33.12704 -32.89007 -31.53564 -30.49915 -29.56619 -28.58580 -27.09182 -24.82274 -23.46082 -22.09842 -21.72650 -20.83092 -19.77834 -18.05412 -17.47279 -17.21332 -16.78274 -16.48238 -16.18458 -15.96715 -15.70862 -15.40589 -15.23872 -14.52137 -14.20370 -14.05466 -13.88934 -13.86482 -13.69842 -13.43536 -12.94722 -12.70458 -12.46481 -12.38839 -12.12320 -12.09927 -11.88624 -11.43402 -11.39328 -11.16831 -10.97828 -10.56509 -10.21834 -10.16953 -9.78180 -9.52886 -9.50064 -9.12808 -8.87797 -8.74377 -7.76219 -7.58319 -7.18974 -6.92280 -4.30587 0.49046 0.85007 1.50997 2.36418 2.51813 2.91375 3.03306 3.06801 3.09968 3.26646 3.29598 3.68098 3.86939 3.88718 4.21384 4.25787 4.46400 4.51413 4.64407 4.85293 4.90906 4.93008 5.10145 5.11513 5.14000 5.50877 5.58413 5.64576 5.73332 5.81970 6.06639 6.14819 6.39315 6.47679 6.72170 6.90554 6.96819 7.10160 7.24860 7.52769 7.63424 7.84299 7.98836 8.20444 8.23026 8.51278 8.68213 8.80801 8.95587 9.98602 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.031399 B = 0.001578 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.531919 B =17739.986698 C =18110.231345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.224 4.224 11 C -0.064 4.064 12 C -0.025 4.025 13 N -0.644 5.644 14 C 0.512 3.488 15 O -0.512 6.512 16 C -0.130 4.130 17 S -0.163 6.163 18 C -0.073 4.073 19 C -0.079 4.079 20 C -0.072 4.072 21 C -0.153 4.153 22 C 0.100 3.900 23 F -0.140 7.140 24 C -0.153 4.153 25 C -0.072 4.072 26 C -0.100 4.100 27 C -0.171 4.171 28 H 0.284 0.716 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.394 0.606 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.089 0.911 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 -20.473 11.508 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.101 0.899 9 C 0.110 3.890 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.117 4.117 13 N -0.287 5.287 14 C 0.297 3.703 15 O -0.388 6.388 16 C -0.281 4.281 17 S 0.066 5.934 18 C -0.220 4.220 19 C -0.080 4.080 20 C -0.092 4.092 21 C -0.172 4.172 22 C 0.080 3.920 23 F -0.119 7.119 24 C -0.172 4.172 25 C -0.092 4.092 26 C -0.120 4.120 27 C -0.191 4.191 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.228 0.772 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.107 0.893 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.924 -20.299 10.880 23.111 hybrid contribution -1.460 0.633 0.611 1.704 sum -3.383 -19.666 11.491 23.027 Atomic orbital electron populations 1.69942 1.08100 1.29916 1.31160 1.25948 0.94371 1.01562 0.91495 0.86500 0.81549 0.80751 0.79245 1.19422 1.19865 1.18051 1.19529 1.05405 0.93743 1.30478 0.89935 1.17610 0.89661 0.91870 0.89842 1.20600 1.07067 0.92289 1.04403 1.20306 0.96273 0.98058 0.93755 1.17015 1.07690 0.84636 1.02362 1.42800 1.11876 1.15862 1.58177 1.19549 0.86536 0.83419 0.80830 1.90745 1.16950 1.79246 1.51865 1.23557 1.01967 0.97955 1.04656 1.87940 1.17804 1.14782 1.72882 1.22432 0.99645 0.96279 1.03660 1.19238 0.98463 0.94939 0.95401 1.20941 0.97251 0.92361 0.98638 1.21143 0.97935 1.00953 0.97156 1.17776 0.91596 0.86625 0.96043 1.91506 1.68063 1.57768 1.94557 1.21145 1.01405 0.94296 1.00339 1.20944 0.94021 0.97432 0.96781 1.20153 1.00666 0.91546 0.99662 1.20614 1.02558 0.96628 0.99313 0.90562 0.88675 0.87938 0.77214 0.87551 0.87501 0.88987 0.88996 0.84601 0.84492 0.84491 0.84594 0.89274 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.17 11.78 55.55 0.65 -18.51 16 2 C 0.09 2.16 4.77 -17.34 -0.08 2.07 16 3 Si 0.90 18.05 29.66 -169.99 -5.04 13.01 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -12.20 8.94 -37.85 -0.34 -12.54 16 8 H 0.08 2.11 8.02 -52.48 -0.42 1.69 16 9 C 0.11 3.01 5.57 -106.80 -0.60 2.41 16 10 C -0.22 -5.70 9.74 -39.26 -0.38 -6.09 16 11 C -0.06 -1.55 8.59 -39.79 -0.34 -1.89 16 12 C -0.03 -0.55 6.25 -83.57 -0.52 -1.07 16 13 N -0.64 -10.93 5.30 -9.74 -0.05 -10.99 16 14 C 0.51 8.63 7.66 -10.98 -0.08 8.54 16 15 O -0.51 -11.02 13.48 5.56 0.07 -10.95 16 16 C -0.13 -1.45 6.43 36.01 0.23 -1.22 16 17 S -0.16 -2.00 20.86 -107.50 -2.24 -4.24 16 18 C -0.07 -0.56 6.07 36.00 0.22 -0.34 16 19 C -0.08 -0.65 5.14 -104.62 -0.54 -1.19 16 20 C -0.07 -0.56 9.70 -39.59 -0.38 -0.95 16 21 C -0.15 -1.23 10.03 -39.51 -0.40 -1.62 16 22 C 0.10 0.89 7.30 -39.42 -0.29 0.61 16 23 F -0.14 -1.37 17.27 2.25 0.04 -1.33 16 24 C -0.15 -1.23 10.03 -39.51 -0.40 -1.63 16 25 C -0.07 -0.57 9.70 -39.59 -0.38 -0.95 16 26 C -0.10 -2.25 9.90 -39.79 -0.39 -2.65 16 27 C -0.17 -4.33 8.74 -39.26 -0.34 -4.68 16 28 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 29 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 30 H 0.10 2.45 6.45 -52.48 -0.34 2.11 16 31 H 0.39 5.09 8.82 -40.82 -0.36 4.73 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.57 8.09 -51.92 -0.42 0.15 16 35 H 0.09 0.56 8.08 -51.92 -0.42 0.14 16 36 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 41 H 0.11 2.75 6.52 -52.49 -0.34 2.40 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -31.33 373.11 -10.78 -42.11 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.82 Total: 8.44 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -5.02 Total: -23.17 kcal Atomic # 7 Polarization: -30.10 SS G_CDS: 0.60 Total: -29.50 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.04 Total: 13.01 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -2.24 Total: -4.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.33 -10.78 -42.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038754734.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.262 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds