Wall clock time and date at job start Tue Mar 31 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42101 * 110.54425 * 2 1 4 4 O 1.42106 * 110.54218 * 223.25233 * 2 1 3 5 5 C 1.76191 * 104.45220 * 111.62548 * 2 1 3 6 6 C 1.38291 * 119.92680 * 269.72945 * 5 2 1 7 7 C 1.38099 * 120.07643 * 179.72619 * 6 5 2 8 8 N 1.48029 * 120.04050 * 180.27565 * 7 6 5 9 9 O 1.21795 * 119.99570 * 5.38053 * 8 7 6 10 10 O 1.21797 * 120.00004 * 185.38141 * 8 7 6 11 11 C 1.38918 * 119.92414 * 0.54106 * 7 6 5 12 12 N 1.39675 * 120.07117 * 179.75265 * 11 7 6 13 13 C 1.46897 * 110.99718 * 263.49256 * 12 11 7 14 14 C 1.50704 * 109.47082 * 185.22257 * 13 12 11 15 15 H 1.07996 * 119.99896 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99841 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00171 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99508 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47427 * 359.97438 * 18 16 14 20 20 H 1.48510 * 109.47098 * 120.00092 * 18 16 14 21 21 H 1.48498 * 109.46988 * 239.99614 * 18 16 14 22 22 C 1.38903 * 119.84934 * 359.72869 * 11 7 6 23 23 N 1.48019 * 120.03674 * 180.02562 * 22 11 7 24 24 O 1.21801 * 120.00199 * 174.51672 * 23 22 11 25 25 O 1.21801 * 120.00404 * 354.51868 * 23 22 11 26 26 C 1.38112 * 119.92813 * 0.02562 * 22 11 7 27 27 H 1.09001 * 109.47135 * 308.37871 * 1 2 3 28 28 H 1.09004 * 109.47096 * 68.37312 * 1 2 3 29 29 H 1.08997 * 109.47390 * 188.37196 * 1 2 3 30 30 H 1.07999 * 119.95883 * 359.97438 * 6 5 2 31 31 H 1.00899 * 110.99628 * 139.54751 * 12 11 7 32 32 H 1.09000 * 109.47760 * 305.22546 * 13 12 11 33 33 H 1.08999 * 109.46890 * 65.22711 * 13 12 11 34 34 H 0.96996 * 119.99865 * 179.97438 * 17 16 14 35 35 H 1.07997 * 119.96348 * 180.02562 * 26 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.4313 0.2397 2.6475 7 6 2.7705 -0.2503 3.8933 8 7 2.9545 0.6795 5.0304 9 8 2.7119 1.8651 4.8929 10 8 3.3485 0.2589 6.1034 11 6 2.9442 -1.6163 4.0770 12 7 3.2922 -2.1147 5.3345 13 6 4.7430 -2.3217 5.4356 14 6 5.0663 -2.9776 6.7533 15 1 4.2733 -3.2171 7.4462 16 6 6.3745 -3.2718 7.0743 17 7 7.3403 -2.9797 6.2307 18 14 6.7751 -4.0854 8.7073 19 1 5.5208 -4.3075 9.4706 20 1 7.4423 -5.3890 8.4604 21 1 7.6808 -3.2061 9.4895 22 6 2.7704 -2.4853 3.0074 23 7 2.9539 -3.9416 3.1986 24 8 2.7048 -4.7115 2.2882 25 8 3.3539 -4.3701 4.2662 26 6 2.4263 -1.9891 1.7653 27 1 -0.3633 0.6380 0.8056 28 1 -0.3633 0.3788 -0.9554 29 1 -0.3634 -1.0167 0.1496 30 1 2.3008 1.3019 2.5029 31 1 2.7906 -2.9663 5.5374 32 1 5.0765 -2.9625 4.6193 33 1 5.2524 -1.3600 5.3738 34 1 8.2606 -3.1863 6.4568 35 1 2.2906 -2.6642 0.9334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039389329.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:12 Heat of formation + Delta-G solvation = -11.303745 kcal Electronic energy + Delta-G solvation = -28755.879486 eV Core-core repulsion = 24275.965591 eV Total energy + Delta-G solvation = -4479.913895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.060 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.57052 -41.91656 -39.93586 -37.71058 -37.16464 -36.53123 -36.34921 -35.58564 -32.91225 -32.88388 -30.90521 -30.08339 -27.34841 -26.95770 -25.99450 -23.47389 -22.74508 -22.04093 -20.57792 -19.16474 -18.95253 -18.30196 -18.12020 -17.95722 -17.41923 -17.31649 -17.16987 -16.77946 -16.66062 -16.09671 -15.80342 -15.00010 -14.33506 -14.15949 -13.82483 -13.75210 -13.53861 -13.32080 -12.71428 -12.64116 -12.50746 -12.16188 -12.01284 -11.62599 -11.55954 -11.29551 -11.22830 -11.10067 -10.98734 -10.89507 -10.81453 -10.73293 -10.52022 -10.34935 -10.06992 -9.43981 -8.77810 -8.26766 -6.17772 -4.20341 -0.70868 -0.66664 -0.37032 0.59291 0.97678 1.27312 1.44346 2.11319 2.35072 3.25954 3.29404 3.36024 3.40210 3.43476 3.50128 3.81711 3.95344 4.03569 4.07691 4.18351 4.37189 4.44400 4.67648 4.79635 4.91939 5.04711 5.20277 5.21509 6.18275 6.39346 6.55372 6.81339 7.24903 7.45391 7.58916 7.83011 7.87400 8.08283 8.82216 9.43926 10.93927 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.003908 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.516641 B = 7162.750435 C = 8304.087777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.511 3.489 3 O -0.921 6.921 4 O -0.922 6.922 5 C -0.698 4.698 6 C 0.092 3.908 7 C -0.071 4.071 8 N 0.026 4.974 9 O -0.196 6.196 10 O -0.057 6.057 11 C 0.301 3.699 12 N -0.631 5.631 13 C 0.218 3.782 14 C -0.508 4.508 15 H 0.072 0.928 16 C 0.061 3.939 17 N -0.897 5.897 18 Si 0.909 3.091 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.121 4.121 23 N 0.028 4.972 24 O -0.156 6.156 25 O -0.112 6.112 26 C 0.095 3.905 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.184 0.816 31 H 0.372 0.628 32 H 0.008 0.992 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.225 5.408 -13.381 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.686 3.314 3 O -0.919 6.919 4 O -0.919 6.919 5 C -0.783 4.783 6 C 0.072 3.928 7 C -0.158 4.158 8 N 0.551 4.449 9 O -0.396 6.396 10 O -0.294 6.294 11 C 0.195 3.805 12 N -0.265 5.265 13 C 0.098 3.902 14 C -0.546 4.546 15 H 0.090 0.910 16 C -0.141 4.141 17 N -0.536 5.536 18 Si 0.737 3.263 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.209 4.209 23 N 0.550 4.450 24 O -0.369 6.369 25 O -0.332 6.332 26 C 0.075 3.925 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.201 0.799 31 H 0.201 0.799 32 H 0.026 0.974 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.612 6.545 -14.371 22.205 hybrid contribution 0.069 -1.601 1.385 2.118 sum -15.543 4.944 -12.986 20.848 Atomic orbital electron populations 1.30222 1.24356 1.12622 1.12604 1.05340 0.78313 0.74793 0.72964 1.93640 1.77509 1.35678 1.85042 1.93640 1.77521 1.61611 1.59149 1.30900 1.23221 1.00606 1.23555 1.21039 0.81547 1.02368 0.87851 1.20999 1.16172 0.89187 0.89481 1.43003 0.99372 1.00666 1.01815 1.94517 1.56679 0.98639 1.89800 1.94792 1.42201 1.81241 1.11191 1.18941 0.80699 0.90634 0.90240 1.58750 1.13945 1.37918 1.15859 1.19845 0.74108 0.97148 0.99081 1.20896 0.93071 1.39294 1.01339 0.91023 1.24931 0.95859 0.95592 0.97711 1.69946 1.00254 1.47407 1.35950 0.86258 0.78544 0.78771 0.82767 1.19370 1.20948 1.20893 1.21792 1.19060 0.83297 0.96783 1.43172 0.98804 1.01817 1.01207 1.94530 1.54151 1.52612 1.35598 1.94703 1.44841 1.80433 1.13178 1.20992 0.81299 0.94501 0.95709 0.84514 0.84195 0.84559 0.79858 0.79939 0.97385 0.94533 0.92584 0.80112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.38 10.79 101.05 1.09 -0.29 16 2 S 2.51 16.97 5.80 -107.50 -0.62 16.35 16 3 O -0.92 -9.10 17.11 -57.54 -0.98 -10.09 16 4 O -0.92 -9.10 17.12 -57.54 -0.98 -10.08 16 5 C -0.70 -6.61 5.66 -39.54 -0.22 -6.83 16 6 C 0.09 1.04 8.98 -39.61 -0.36 0.69 16 7 C -0.07 -1.11 6.86 -79.74 -0.55 -1.65 16 8 N 0.03 0.47 4.45 34.06 0.15 0.62 16 9 O -0.20 -3.31 18.46 -29.46 -0.54 -3.86 16 10 O -0.06 -1.18 16.48 -29.46 -0.49 -1.66 16 11 C 0.30 5.11 5.26 -83.79 -0.44 4.67 16 12 N -0.63 -12.64 4.29 -59.53 -0.26 -12.90 16 13 C 0.22 5.35 4.15 -4.98 -0.02 5.33 16 14 C -0.51 -13.57 9.26 -34.44 -0.32 -13.89 16 15 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.90 -25.99 13.29 55.43 0.74 -25.26 16 18 Si 0.91 21.22 29.54 -169.99 -5.02 16.19 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.12 -1.82 6.76 -79.75 -0.54 -2.36 16 23 N 0.03 0.48 4.45 34.06 0.15 0.64 16 24 O -0.16 -2.52 18.46 -29.46 -0.54 -3.06 16 25 O -0.11 -2.20 14.01 -29.46 -0.41 -2.61 16 26 C 0.10 1.06 8.97 -39.61 -0.36 0.71 16 27 H 0.14 0.11 8.14 -51.92 -0.42 -0.31 16 28 H 0.14 0.07 8.14 -51.92 -0.42 -0.35 16 29 H 0.14 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.18 1.64 7.12 -52.49 -0.37 1.26 16 31 H 0.37 7.14 6.35 -39.29 -0.25 6.89 16 32 H 0.01 0.22 6.78 -51.93 -0.35 -0.13 16 33 H 0.04 0.99 7.81 -51.93 -0.41 0.58 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.18 1.57 7.13 -52.49 -0.37 1.20 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -35.45 332.66 -8.18 -43.62 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -2.57 Total: -0.88 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.81 Total: -12.04 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.78 Total: -36.89 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -3.96 Total: -31.37 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 16.97 SS G_CDS: -0.62 Total: 16.35 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.45 -8.18 -43.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039389329.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.321 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds