Wall clock time and date at job start Tue Mar 31 2020 06:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47104 * 239.99595 * 3 2 1 5 5 H 1.48504 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47109 * 119.99399 * 3 2 1 7 7 C 1.37878 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00185 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99849 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46958 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99650 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99970 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99624 * 179.97438 * 11 10 9 14 14 N 1.46903 * 109.46919 * 180.02562 * 13 11 10 15 15 C 1.47850 * 110.99769 * 69.15600 * 14 13 11 16 16 C 1.54903 * 104.79211 * 146.36481 * 15 14 13 17 17 C 1.55401 * 101.74436 * 323.01900 * 16 15 14 18 18 C 1.47434 * 110.99751 * 190.00061 * 14 13 11 19 19 H 1.09000 * 109.88678 * 117.17737 * 18 14 13 20 20 C 1.50699 * 109.89108 * 356.14829 * 18 14 13 21 21 N 1.27929 * 124.23994 * 315.29087 * 20 18 14 22 22 C 1.34666 * 117.84807 * 180.02562 * 21 20 18 23 23 C 1.40970 * 129.68580 * 179.97438 * 22 21 20 24 24 C 1.36174 * 120.41860 * 179.97438 * 23 22 21 25 25 C 1.38789 * 120.78376 * 0.02562 * 24 23 22 26 26 C 1.37658 * 120.06488 * 0.25384 * 25 24 23 27 27 C 1.39336 * 119.95321 * 359.47976 * 26 25 24 28 28 S 1.70648 * 124.23626 * 135.33128 * 20 18 14 29 29 H 0.97003 * 120.00391 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47565 * 59.99607 * 9 7 2 31 31 H 1.09010 * 109.46924 * 299.99722 * 9 7 2 32 32 H 0.96994 * 120.00177 * 359.97438 * 10 9 7 33 33 H 1.08998 * 109.47112 * 59.99967 * 13 11 10 34 34 H 1.08996 * 109.47124 * 300.00095 * 13 11 10 35 35 H 1.08997 * 110.37462 * 265.19259 * 15 14 13 36 36 H 1.09002 * 110.37093 * 27.42175 * 15 14 13 37 37 H 1.08997 * 110.99472 * 81.02321 * 16 15 14 38 38 H 1.09003 * 110.99160 * 204.80491 * 16 15 14 39 39 H 1.09008 * 110.67924 * 277.17917 * 17 16 15 40 40 H 1.08994 * 110.84973 * 153.86361 * 17 16 15 41 41 H 1.07994 * 119.78869 * 0.02562 * 23 22 21 42 42 H 1.08004 * 119.60872 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.97030 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.02447 * 179.71102 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0005 14 7 1.9988 -7.3010 0.0006 15 6 1.3080 -7.5140 -1.2891 16 6 1.3503 -9.0464 -1.5120 17 6 2.7523 -9.4094 -0.9484 18 6 2.9087 -8.4363 0.2391 19 1 2.6391 -8.9387 1.1681 20 6 4.3315 -7.9457 0.3159 21 7 4.8473 -7.1032 -0.4970 22 6 6.1342 -6.7541 -0.3087 23 6 6.9416 -5.8618 -1.0429 24 6 8.2364 -5.6462 -0.6807 25 6 8.7858 -6.2985 0.4142 26 6 8.0226 -7.1798 1.1462 27 6 6.6941 -7.4087 0.7939 28 16 5.4567 -8.4450 1.4977 29 1 -0.4851 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8904 32 1 3.1567 -3.4353 0.0002 33 1 3.3606 -5.9708 0.8899 34 1 3.3592 -5.9711 -0.8900 35 1 0.2763 -7.1677 -1.2288 36 1 1.8346 -6.9974 -2.0915 37 1 0.5633 -9.5452 -0.9464 38 1 1.2798 -9.2888 -2.5724 39 1 3.5254 -9.2323 -1.6962 40 1 2.7764 -10.4435 -0.6050 41 1 6.5303 -5.3452 -1.8974 42 1 8.8431 -4.9594 -1.2523 43 1 9.8142 -6.1174 0.6900 44 1 8.4522 -7.6906 1.9953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043765056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:00 Heat of formation + Delta-G solvation = 46.408829 kcal Electronic energy + Delta-G solvation = -27579.098059 eV Core-core repulsion = 23816.494972 eV Total energy + Delta-G solvation = -3762.603087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.05476 -39.54299 -38.09532 -36.71057 -34.05891 -32.36612 -32.03581 -31.39503 -31.04711 -28.59365 -27.82330 -25.81915 -24.77075 -23.23644 -22.61325 -21.95214 -21.33577 -19.93356 -19.56048 -18.79554 -17.31839 -16.83415 -16.23351 -15.83392 -15.67222 -15.38454 -15.06792 -14.92749 -14.81249 -14.68789 -14.16225 -13.93369 -13.78668 -13.35304 -12.97662 -12.76525 -12.61250 -12.30446 -12.18455 -12.00574 -11.83351 -11.74552 -11.53603 -11.21884 -11.13472 -11.09313 -10.95492 -10.85249 -10.74342 -10.38099 -10.27170 -9.85469 -9.36010 -9.07086 -8.78241 -8.67814 -8.38052 -8.09003 -7.75999 -6.12269 -4.18831 0.13163 0.87113 0.97349 1.46523 2.04553 3.27387 3.31843 3.33518 3.40980 3.46829 3.55360 3.80372 4.27567 4.29958 4.39919 4.50332 4.61341 4.67370 4.71861 4.89823 5.00596 5.03972 5.18113 5.23473 5.28620 5.39461 5.54751 5.56973 5.62510 5.64061 5.76144 5.79897 5.86285 5.89176 6.04732 6.10078 6.11690 6.28469 6.40924 6.91121 6.96021 7.34363 7.38813 7.55042 7.59045 7.74028 8.02762 8.72730 8.85615 9.23455 9.48116 10.97974 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.003536 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.699968 B = 7916.087576 C =10311.902032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.253 3.747 10 N -0.716 5.716 11 C 0.498 3.502 12 O -0.542 6.542 13 C 0.024 3.976 14 N -0.486 5.486 15 C 0.047 3.953 16 C -0.127 4.127 17 C -0.127 4.127 18 C 0.142 3.858 19 H 0.111 0.889 20 C 0.079 3.921 21 N -0.458 5.458 22 C 0.083 3.917 23 C -0.061 4.061 24 C -0.106 4.106 25 C -0.103 4.103 26 C -0.073 4.073 27 C -0.184 4.184 28 S 0.105 5.895 29 H 0.266 0.734 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.388 0.612 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.022 -20.848 -0.498 26.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.132 3.868 10 N -0.365 5.365 11 C 0.282 3.718 12 O -0.420 6.420 13 C -0.107 4.107 14 N -0.210 5.210 15 C -0.081 4.081 16 C -0.165 4.165 17 C -0.167 4.167 18 C 0.031 3.969 19 H 0.128 0.872 20 C -0.206 4.206 21 N -0.172 5.172 22 C -0.037 4.037 23 C -0.082 4.082 24 C -0.127 4.127 25 C -0.124 4.124 26 C -0.096 4.096 27 C -0.302 4.302 28 S 0.362 5.638 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.220 0.780 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.146 -21.315 0.336 26.150 hybrid contribution 2.087 1.781 -0.975 2.912 sum 17.233 -19.534 -0.639 26.057 Atomic orbital electron populations 1.69964 1.06085 1.27324 1.48958 1.24940 0.94892 0.99356 0.94764 0.86496 0.79440 0.82431 0.78657 1.20099 1.21050 1.20096 1.21197 0.93173 0.90545 1.53121 0.92087 1.19051 0.88271 0.81909 0.97578 1.46415 1.10900 1.06105 1.73071 1.20437 0.89556 0.84183 0.77646 1.90625 1.16664 1.84735 1.50019 1.22770 0.95211 0.88826 1.03928 1.63772 1.23921 0.99805 1.33487 1.23159 1.01183 0.94760 0.88965 1.22775 0.96189 0.96238 1.01297 1.22888 0.98650 0.98689 0.96501 1.21548 0.81464 0.92916 1.01004 0.87179 1.27411 1.01726 0.96960 0.94532 1.66471 1.09552 1.13510 1.27644 1.19282 0.88999 0.99917 0.95541 1.20461 0.92826 0.95803 0.99108 1.20761 0.94872 0.99771 0.97333 1.21149 1.00016 0.96035 0.95223 1.20334 0.90465 0.98719 1.00035 1.23867 1.00189 1.04427 1.01759 1.83924 1.02378 1.44403 1.33085 0.92438 0.95692 0.95658 0.78034 0.90004 0.88096 0.88347 0.93419 0.90250 0.90472 0.90703 0.90068 0.84592 0.84692 0.84802 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.54 -15.17 9.28 -34.44 -0.32 -15.49 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.98 5.43 -5.19 -0.03 6.95 16 10 N -0.72 -16.21 5.55 -61.47 -0.34 -16.55 16 11 C 0.50 10.77 7.63 -10.98 -0.08 10.69 16 12 O -0.54 -13.62 15.04 5.56 0.08 -13.54 16 13 C 0.02 0.41 3.82 -4.97 -0.02 0.39 16 14 N -0.49 -7.41 4.86 -226.16 -1.10 -8.51 16 15 C 0.05 0.67 5.75 -2.30 -0.01 0.66 16 16 C -0.13 -1.30 7.08 -24.45 -0.17 -1.47 16 17 C -0.13 -1.21 6.48 -24.76 -0.16 -1.38 16 18 C 0.14 1.66 3.89 -67.88 -0.26 1.40 16 19 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 20 C 0.08 0.94 4.43 -13.90 -0.06 0.88 16 21 N -0.46 -6.06 6.89 -9.08 -0.06 -6.12 16 22 C 0.08 1.02 7.00 -84.96 -0.59 0.43 16 23 C -0.06 -0.65 10.05 -39.29 -0.39 -1.05 16 24 C -0.11 -0.89 9.94 -40.12 -0.40 -1.29 16 25 C -0.10 -0.79 10.04 -39.59 -0.40 -1.19 16 26 C -0.07 -0.65 10.07 -39.38 -0.40 -1.04 16 27 C -0.18 -2.04 6.56 -38.55 -0.25 -2.29 16 28 S 0.11 1.07 23.10 -107.50 -2.48 -1.41 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.39 7.79 8.32 -40.82 -0.34 7.45 16 33 H 0.08 1.37 6.83 -51.93 -0.35 1.01 16 34 H 0.10 1.67 5.66 -51.93 -0.29 1.38 16 35 H 0.10 1.64 7.38 -51.93 -0.38 1.26 16 36 H 0.05 0.72 7.62 -51.93 -0.40 0.32 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.77 7.84 -51.92 -0.41 0.36 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -33.98 373.11 -12.16 -46.13 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.94 Total: 6.12 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -3.65 Total: -2.08 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.77 Total: -57.08 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.48 Total: -1.41 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.98 -12.16 -46.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043765056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.541 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds