Wall clock time and date at job start Tue Mar 31 2020 06:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99646 * 2 1 4 4 H 1.48502 * 109.46917 * 239.99348 * 3 2 1 5 5 H 1.48493 * 109.47506 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46876 * 120.00230 * 3 2 1 7 7 C 1.37870 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99803 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00363 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47100 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00176 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99629 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00632 * 180.02562 * 11 10 9 14 14 N 1.46893 * 109.47645 * 180.02562 * 13 11 10 15 15 C 1.48816 * 111.18563 * 52.66189 * 14 13 11 16 16 C 1.54933 * 103.34785 * 159.50785 * 15 14 13 17 17 C 1.54600 * 102.92055 * 322.68937 * 16 15 14 18 18 C 1.47900 * 111.00251 * 170.00245 * 14 13 11 19 19 H 1.09005 * 109.91690 * 333.70048 * 18 14 13 20 20 C 1.50693 * 109.92116 * 94.80371 * 18 14 13 21 21 N 1.27937 * 124.23749 * 224.60143 * 20 18 14 22 22 C 1.34662 * 117.84144 * 180.02562 * 21 20 18 23 23 C 1.40968 * 129.68496 * 180.02562 * 22 21 20 24 24 C 1.36185 * 120.42634 * 179.97438 * 23 22 21 25 25 C 1.38790 * 120.77445 * 359.76794 * 24 23 22 26 26 C 1.37650 * 120.07016 * 0.49663 * 25 24 23 27 27 C 1.39337 * 119.95228 * 359.48544 * 26 25 24 28 28 S 1.70647 * 124.24010 * 44.63461 * 20 18 14 29 29 H 0.97002 * 119.99945 * 0.02562 * 1 2 3 30 30 H 1.08990 * 109.46823 * 59.99982 * 9 7 2 31 31 H 1.09000 * 109.46882 * 299.99587 * 9 7 2 32 32 H 0.97003 * 120.00240 * 0.02562 * 10 9 7 33 33 H 1.09004 * 109.47064 * 59.99842 * 13 11 10 34 34 H 1.09005 * 109.46943 * 300.00918 * 13 11 10 35 35 H 1.08997 * 110.51192 * 41.07288 * 15 14 13 36 36 H 1.08998 * 110.84036 * 278.09838 * 15 14 13 37 37 H 1.09005 * 110.72133 * 204.33321 * 16 15 14 38 38 H 1.08991 * 110.87973 * 81.12087 * 16 15 14 39 39 H 1.08992 * 110.31045 * 263.04088 * 17 16 15 40 40 H 1.09004 * 110.38718 * 140.92030 * 17 16 15 41 41 H 1.08006 * 119.79002 * 0.02562 * 23 22 21 42 42 H 1.07996 * 119.60909 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.96350 * 180.25716 * 25 24 23 44 44 H 1.08002 * 120.02775 * 179.76697 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5614 -5.1049 0.0011 13 6 2.7330 -6.0288 0.0016 14 7 1.9986 -7.3010 0.0015 15 6 1.0013 -7.3461 -1.1021 16 6 0.7347 -8.8618 -1.2815 17 6 2.1295 -9.4877 -1.0515 18 6 2.9113 -8.4399 -0.2376 19 1 3.7821 -8.1059 -0.8018 20 6 3.3481 -9.0327 1.0771 21 7 4.5530 -9.3629 1.3529 22 6 4.7996 -9.8831 2.5703 23 6 6.0150 -10.3258 3.1307 24 6 6.0490 -10.8253 4.3972 25 6 4.8928 -10.9040 5.1608 26 6 3.6908 -10.4842 4.6376 27 6 3.6369 -9.9699 3.3438 28 16 2.2977 -9.3482 2.3844 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 3.1567 -3.4355 0.0009 33 1 3.3596 -5.9707 0.8917 34 1 3.3599 -5.9714 -0.8883 35 1 1.4201 -6.9186 -2.0131 36 1 0.0864 -6.8253 -0.8196 37 1 0.3782 -9.0740 -2.2895 38 1 0.0231 -9.2216 -0.5385 39 1 2.6236 -9.6716 -2.0054 40 1 2.0407 -10.4160 -0.4870 41 1 6.9252 -10.2676 2.5523 42 1 6.9873 -11.1611 4.8133 43 1 4.9355 -11.2986 6.1652 44 1 2.7908 -10.5493 5.2311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043765057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:05 Heat of formation + Delta-G solvation = 30.228181 kcal Electronic energy + Delta-G solvation = -26743.420723 eV Core-core repulsion = 22980.115990 eV Total energy + Delta-G solvation = -3763.304733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.61004 -39.74357 -38.17308 -36.82127 -34.22212 -32.52783 -32.17346 -31.34575 -30.99863 -28.49149 -27.97218 -25.92949 -24.62703 -23.23843 -22.53082 -21.65954 -21.28066 -20.42666 -19.72965 -18.55344 -17.34484 -16.82896 -16.34527 -15.90215 -15.58255 -15.39378 -15.12007 -14.99217 -14.85513 -14.68922 -14.23082 -14.03728 -13.71848 -13.30531 -13.00531 -12.69786 -12.66395 -12.46166 -12.24915 -12.13440 -11.97969 -11.87070 -11.47375 -11.35625 -11.09073 -10.97026 -10.94617 -10.84445 -10.77048 -10.30823 -10.27936 -9.77405 -9.42906 -9.03755 -8.79621 -8.75174 -8.52885 -8.23995 -7.89998 -6.18108 -4.25181 0.23892 0.91404 1.16575 1.74081 2.14058 3.24344 3.28431 3.29833 3.31049 3.33036 3.48088 3.85358 4.22890 4.32716 4.40800 4.49445 4.57039 4.67658 4.74348 4.90102 5.00895 5.07413 5.17928 5.20690 5.29017 5.31613 5.36508 5.48974 5.53637 5.60185 5.62901 5.70418 5.82237 5.89749 5.96692 6.07244 6.11279 6.30168 6.44709 6.76881 6.79914 7.28458 7.41824 7.47790 7.49666 7.64596 7.95227 8.58935 8.75792 9.06652 9.41429 10.91989 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013248 B = 0.002432 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.062049 B =11510.681438 C =12778.022391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.712 5.712 11 C 0.501 3.499 12 O -0.540 6.540 13 C 0.026 3.974 14 N -0.495 5.495 15 C 0.037 3.963 16 C -0.126 4.126 17 C -0.120 4.120 18 C 0.130 3.870 19 H 0.087 0.913 20 C 0.111 3.889 21 N -0.478 5.478 22 C 0.084 3.916 23 C -0.067 4.067 24 C -0.110 4.110 25 C -0.109 4.109 26 C -0.069 4.069 27 C -0.202 4.202 28 S 0.161 5.839 29 H 0.267 0.733 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.390 0.610 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.289 -24.846 4.278 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.361 5.361 11 C 0.285 3.715 12 O -0.419 6.419 13 C -0.105 4.105 14 N -0.220 5.220 15 C -0.090 4.090 16 C -0.164 4.164 17 C -0.159 4.159 18 C 0.017 3.983 19 H 0.105 0.895 20 C -0.173 4.173 21 N -0.192 5.192 22 C -0.037 4.037 23 C -0.088 4.088 24 C -0.131 4.131 25 C -0.131 4.131 26 C -0.091 4.091 27 C -0.322 4.322 28 S 0.419 5.581 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.223 0.777 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.141 0.859 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.294 -24.596 4.454 26.039 hybrid contribution 2.403 0.982 -0.383 2.624 sum 9.697 -23.614 4.072 25.850 Atomic orbital electron populations 1.69965 1.06091 1.27436 1.48771 1.24944 0.94922 0.99436 0.94669 0.86474 0.79425 0.82310 0.78706 1.20077 1.21041 1.20048 1.21189 0.93228 0.90486 1.53390 0.91984 1.19092 0.88212 0.81803 0.97735 1.46443 1.11194 1.06018 1.72396 1.20133 0.89372 0.84134 0.77885 1.90589 1.16613 1.84282 1.50405 1.22276 0.96037 0.89254 1.02945 1.64413 1.11961 1.00196 1.45401 1.23580 0.98264 0.95807 0.91305 1.22593 0.96102 0.95465 1.02258 1.22468 0.96181 0.97517 0.99745 1.20986 0.96620 0.92479 0.88173 0.89524 1.26586 0.91130 0.99114 1.00503 1.66185 1.20005 1.14974 1.18036 1.19158 0.94440 1.01393 0.88688 1.20372 0.95354 0.97758 0.95324 1.20700 0.98890 0.99668 0.93813 1.21111 0.91987 0.99921 1.00061 1.20355 0.98811 0.97890 0.92073 1.24206 0.98136 1.08620 1.01194 1.84293 1.08988 1.58604 1.06176 0.92374 0.95540 0.95466 0.77736 0.88377 0.91746 0.93728 0.85936 0.90510 0.90417 0.90204 0.90753 0.85050 0.84986 0.84949 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 10 N -0.71 -14.77 5.55 -61.48 -0.34 -15.11 16 11 C 0.50 9.70 7.54 -10.99 -0.08 9.61 16 12 O -0.54 -12.22 13.54 5.56 0.08 -12.14 16 13 C 0.03 0.39 5.52 -4.98 -0.03 0.36 16 14 N -0.49 -6.90 4.67 -225.14 -1.05 -7.95 16 15 C 0.04 0.50 5.31 -1.74 -0.01 0.49 16 16 C -0.13 -1.28 7.06 -24.87 -0.18 -1.46 16 17 C -0.12 -1.16 6.56 -25.37 -0.17 -1.33 16 18 C 0.13 1.54 2.96 -67.80 -0.20 1.34 16 19 H 0.09 1.00 7.57 -51.93 -0.39 0.61 16 20 C 0.11 1.44 6.01 -13.90 -0.08 1.36 16 21 N -0.48 -6.59 10.57 -9.08 -0.10 -6.69 16 22 C 0.08 1.08 7.00 -84.96 -0.59 0.49 16 23 C -0.07 -0.68 10.05 -39.29 -0.39 -1.08 16 24 C -0.11 -0.87 9.94 -40.12 -0.40 -1.27 16 25 C -0.11 -0.85 10.04 -39.59 -0.40 -1.25 16 26 C -0.07 -0.66 10.07 -39.39 -0.40 -1.06 16 27 C -0.20 -2.45 6.56 -38.54 -0.25 -2.70 16 28 S 0.16 2.00 22.87 -107.50 -2.46 -0.46 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.39 6.99 8.32 -40.82 -0.34 6.66 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.06 0.81 7.81 -51.93 -0.41 0.41 16 35 H 0.04 0.59 8.02 -51.93 -0.42 0.18 16 36 H 0.12 2.03 6.01 -51.93 -0.31 1.72 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 41 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -32.70 378.52 -12.10 -44.81 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.03 Total: 4.53 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -3.63 Total: -3.27 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.75 Total: -54.98 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.46 Total: -0.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.70 -12.10 -44.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043765057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.034 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds