Wall clock time and date at job start Tue Mar 31 2020 05:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 119.99900 * 2 1 4 4 H 1.48502 * 109.47545 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47155 * 299.99876 * 3 2 1 6 6 H 1.48500 * 109.47301 * 59.99582 * 3 2 1 7 7 C 1.38647 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00340 * 179.97438 * 7 2 1 9 9 O 1.34802 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.35610 * 117.00096 * 185.06998 * 9 7 2 11 11 C 1.38722 * 120.15691 * 354.42332 * 10 9 7 12 12 C 1.38114 * 120.08065 * 180.29679 * 11 10 9 13 13 C 1.38525 * 120.41062 * 359.69566 * 12 11 10 14 14 C 1.37884 * 120.31524 * 0.02785 * 13 12 11 15 15 C 1.39690 * 119.91007 * 359.97438 * 14 13 12 16 16 C 1.47284 * 120.20356 * 179.97438 * 15 14 13 17 17 N 1.29869 * 120.00531 * 179.97438 * 16 15 14 18 18 N 1.40093 * 120.00667 * 179.97438 * 17 16 15 19 19 C 1.34779 * 120.00551 * 180.02562 * 18 17 16 20 20 O 1.21604 * 119.99662 * 0.02562 * 19 18 17 21 21 C 1.47704 * 120.00247 * 180.02562 * 19 18 17 22 22 C 1.39651 * 120.15964 * 359.97438 * 21 19 18 23 23 C 1.37895 * 119.86550 * 180.02562 * 22 21 19 24 24 C 1.38423 * 120.18375 * 0.02562 * 23 22 21 25 25 C 1.38275 * 120.32325 * 0.02562 * 24 23 22 26 26 C 1.38147 * 120.13145 * 359.67478 * 25 24 23 27 27 Cl 1.73601 * 120.09656 * 180.29899 * 26 25 24 28 28 H 0.96998 * 120.00324 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.96159 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.79686 * 179.72338 * 12 11 10 31 31 H 1.08004 * 119.84459 * 180.02562 * 13 12 11 32 32 H 1.08004 * 120.04421 * 179.97438 * 14 13 12 33 33 H 1.08003 * 120.00011 * 359.97438 * 16 15 14 34 34 H 0.97003 * 119.99976 * 0.02562 * 18 17 16 35 35 H 1.07995 * 120.06962 * 359.97438 * 22 21 19 36 36 H 1.07999 * 119.90961 * 179.97438 * 23 22 21 37 37 H 1.08001 * 119.83926 * 179.97438 * 24 23 22 38 38 H 1.08002 * 119.93805 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8908 2.3964 -1.2126 6 1 1.8907 2.3965 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0694 -3.5030 0.1079 11 6 3.4551 -3.4402 0.0950 12 6 4.2016 -4.5976 0.1983 13 6 3.5755 -5.8271 0.3215 14 6 2.1992 -5.9084 0.3418 15 6 1.4312 -4.7461 0.2382 16 6 -0.0393 -4.8255 0.2587 17 7 -0.7496 -3.7425 0.1626 18 7 -2.1483 -3.8180 0.1815 19 6 -2.8854 -2.6940 0.0813 20 8 -2.3362 -1.6144 -0.0259 21 6 -4.3601 -2.7736 0.1018 22 6 -4.9943 -4.0118 0.2243 23 6 -6.3715 -4.0792 0.2422 24 6 -7.1262 -2.9234 0.1386 25 6 -6.5063 -1.6935 0.0160 26 6 -5.1274 -1.6101 0.0028 27 17 -4.3501 -0.0648 -0.1435 28 1 -0.4850 0.8400 -0.0004 29 1 3.9509 -2.4854 -0.0002 30 1 5.2802 -4.5438 0.1833 31 1 4.1682 -6.7264 0.4020 32 1 1.7156 -6.8694 0.4376 33 1 -0.5271 -5.7844 0.3535 34 1 -2.5865 -4.6792 0.2667 35 1 -4.4074 -4.9148 0.3040 36 1 -6.8627 -5.0364 0.3365 37 1 -8.2045 -2.9826 0.1528 38 1 -7.1012 -0.7956 -0.0640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043776180.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:23 Heat of formation + Delta-G solvation = 59.482235 kcal Electronic energy + Delta-G solvation = -26447.031607 eV Core-core repulsion = 22476.711440 eV Total energy + Delta-G solvation = -3970.320166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.071 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.86407 -38.93023 -37.93100 -36.27966 -36.15181 -35.46908 -32.51266 -32.07232 -31.11027 -30.76141 -29.33698 -28.35611 -25.21446 -24.24561 -23.02298 -22.35867 -21.45535 -20.23475 -19.86521 -18.09886 -17.79948 -16.75475 -16.34058 -16.16597 -15.37037 -14.95514 -14.62084 -14.57635 -14.31909 -14.05628 -14.01673 -13.58102 -13.52827 -13.35830 -13.09256 -12.59801 -12.34079 -11.96763 -11.66421 -11.60722 -11.52460 -11.35024 -11.08362 -10.79161 -10.76400 -10.70833 -10.60696 -10.32149 -9.43913 -9.18279 -9.04861 -8.84610 -8.81105 -8.76783 -8.63381 -7.64114 -6.89343 -6.13421 -3.77592 0.72291 1.03357 1.75851 2.35089 2.50310 3.00926 3.09384 3.23125 3.24362 3.28887 3.37880 4.07647 4.09621 4.54712 4.61677 4.75674 4.76358 5.09529 5.10597 5.24827 5.32372 5.39127 5.40989 5.57252 5.62631 5.74433 5.93888 5.96467 6.00387 6.13807 6.14423 6.31721 6.51089 6.57503 6.79537 6.92512 7.19922 7.29993 7.45645 7.49200 7.77549 7.90274 8.13493 8.39204 9.15197 9.22423 9.87974 10.90968 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.004018 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.993967 B = 6966.677590 C = 9617.212450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.046 3.954 3 Si 0.926 3.074 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.409 4.409 8 H 0.089 0.911 9 O -0.113 6.113 10 C 0.164 3.836 11 C -0.237 4.237 12 C -0.062 4.062 13 C -0.231 4.231 14 C -0.043 4.043 15 C -0.147 4.147 16 C 0.095 3.905 17 N -0.178 5.178 18 N -0.591 5.591 19 C 0.534 3.466 20 O -0.402 6.402 21 C -0.111 4.111 22 C -0.083 4.083 23 C -0.127 4.127 24 C -0.092 4.092 25 C -0.122 4.122 26 C 0.010 3.990 27 Cl -0.018 7.018 28 H 0.267 0.733 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.363 0.637 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.972 -9.164 0.735 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.166 4.166 3 Si 0.751 3.249 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.485 4.485 8 H 0.106 0.894 9 O -0.009 6.009 10 C 0.103 3.897 11 C -0.256 4.256 12 C -0.081 4.081 13 C -0.250 4.250 14 C -0.064 4.064 15 C -0.152 4.152 16 C -0.114 4.114 17 N 0.016 4.984 18 N -0.335 5.335 19 C 0.317 3.683 20 O -0.266 6.266 21 C -0.117 4.117 22 C -0.102 4.102 23 C -0.145 4.145 24 C -0.111 4.111 25 C -0.141 4.141 26 C -0.018 4.018 27 Cl 0.012 6.988 28 H 0.077 0.923 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.200 0.800 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.162 -6.873 0.514 13.979 hybrid contribution 0.178 -0.579 0.139 0.622 sum -11.984 -7.453 0.653 14.128 Atomic orbital electron populations 1.70281 1.04593 1.26865 1.39225 1.25339 0.95886 0.98280 0.97080 0.85897 0.79341 0.81603 0.78051 1.19293 1.20379 1.20383 1.21369 0.91605 0.81205 1.54291 0.89399 1.84172 1.33178 1.10757 1.72807 1.19433 0.89924 0.87854 0.92468 1.21116 0.93705 0.99008 1.11820 1.20827 0.98368 0.92451 0.96450 1.20378 0.94020 0.96895 1.13743 1.20622 0.93488 0.95431 0.96879 1.17307 0.88911 0.91625 1.17322 1.24220 0.94033 0.93421 0.99719 1.75890 0.86918 1.24022 1.11572 1.47009 1.03383 1.08504 1.74626 1.17838 0.85152 0.84757 0.80554 1.91252 1.70835 1.25029 1.39502 1.19999 0.94143 0.92939 1.04606 1.21322 0.95059 0.96206 0.97581 1.21139 0.93528 0.98918 1.00957 1.21254 1.00280 0.91792 0.97746 1.21087 0.92128 0.99110 1.01773 1.21145 0.92636 0.88435 0.99624 1.98469 1.80537 1.24676 1.95146 0.92279 0.85533 0.87685 0.87628 0.86995 0.88441 0.79981 0.85159 0.85069 0.84944 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -23.28 12.56 55.48 0.70 -22.59 16 2 C 0.05 1.28 5.49 -17.52 -0.10 1.18 16 3 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.41 -11.62 9.49 30.88 0.29 -11.33 16 8 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 9 O -0.11 -3.23 7.64 0.56 0.00 -3.23 16 10 C 0.16 4.02 6.66 -38.61 -0.26 3.77 16 11 C -0.24 -5.24 9.16 -39.45 -0.36 -5.60 16 12 C -0.06 -1.14 10.03 -39.52 -0.40 -1.53 16 13 C -0.23 -3.93 10.03 -39.61 -0.40 -4.33 16 14 C -0.04 -0.75 9.79 -39.17 -0.38 -1.14 16 15 C -0.15 -3.10 5.88 -104.89 -0.62 -3.71 16 16 C 0.09 1.86 10.75 -14.71 -0.16 1.70 16 17 N -0.18 -4.09 8.90 32.13 0.29 -3.80 16 18 N -0.59 -11.19 6.21 30.50 0.19 -11.00 16 19 C 0.53 10.88 7.88 -12.39 -0.10 10.78 16 20 O -0.40 -10.15 13.20 5.27 0.07 -10.08 16 21 C -0.11 -1.74 5.88 -104.95 -0.62 -2.35 16 22 C -0.08 -0.94 9.54 -39.18 -0.37 -1.31 16 23 C -0.13 -1.14 10.03 -39.64 -0.40 -1.54 16 24 C -0.09 -0.82 10.04 -39.50 -0.40 -1.22 16 25 C -0.12 -1.37 9.82 -39.60 -0.39 -1.76 16 26 C 0.01 0.15 6.35 -39.06 -0.25 -0.10 16 27 Cl -0.02 -0.32 26.02 -51.86 -1.35 -1.67 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.13 2.82 5.64 -52.48 -0.30 2.52 16 30 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 31 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.10 1.44 8.02 -52.48 -0.42 1.02 16 34 H 0.36 5.08 6.69 -182.60 -1.22 3.85 16 35 H 0.13 1.16 6.41 -52.49 -0.34 0.82 16 36 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 350.83 15.07 5.29 5.29 Total: -1.00 -35.34 350.83 -8.95 -44.29 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.22 Total: 5.04 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -4.89 Total: -18.48 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 1.17 Total: -37.39 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.07 Total: -13.31 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.35 Total: -1.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.34 -8.95 -44.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043776180.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.771 kcal (2) G-P(sol) polarization free energy of solvation -35.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds