Wall clock time and date at job start Tue Mar 31 2020 05:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86803 * 120.00431 * 2 1 4 4 H 1.48501 * 109.47187 * 270.00387 * 3 2 1 5 5 H 1.48498 * 109.46844 * 30.00062 * 3 2 1 6 6 H 1.48493 * 109.47312 * 150.00090 * 3 2 1 7 7 C 1.38649 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00177 * 179.97438 * 7 2 1 9 9 O 1.34805 * 119.99524 * 0.27302 * 7 2 1 10 10 C 1.35610 * 116.99637 * 174.64983 * 9 7 2 11 11 C 1.38721 * 120.16113 * 5.57344 * 10 9 7 12 12 C 1.38119 * 120.08518 * 179.72155 * 11 10 9 13 13 C 1.38526 * 120.40538 * 0.55691 * 12 11 10 14 14 C 1.37891 * 120.31793 * 359.72169 * 13 12 11 15 15 C 1.39687 * 119.90798 * 359.97438 * 14 13 12 16 16 C 1.47284 * 120.20244 * 180.02562 * 15 14 13 17 17 N 1.29866 * 120.00235 * 179.97438 * 16 15 14 18 18 N 1.40107 * 120.00292 * 180.02562 * 17 16 15 19 19 C 1.34773 * 120.00016 * 180.02562 * 18 17 16 20 20 O 1.21598 * 120.00435 * 359.97438 * 19 18 17 21 21 C 1.47736 * 119.99665 * 180.02562 * 19 18 17 22 22 C 1.39640 * 120.13319 * 359.71180 * 21 19 18 23 23 C 1.37885 * 119.86252 * 179.79165 * 22 21 19 24 24 C 1.38514 * 120.13388 * 0.49758 * 23 22 21 25 25 Cl 1.73605 * 119.86466 * 179.71851 * 24 23 22 26 26 C 1.38511 * 120.27230 * 359.73297 * 24 23 22 27 27 C 1.37888 * 120.13377 * 0.03229 * 26 24 23 28 28 H 0.96999 * 119.99747 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.95506 * 0.02562 * 11 10 9 30 30 H 1.07994 * 119.79851 * 180.27339 * 12 11 10 31 31 H 1.07994 * 119.84438 * 179.74162 * 13 12 11 32 32 H 1.08001 * 120.04516 * 179.97438 * 14 13 12 33 33 H 1.08001 * 119.99892 * 359.97438 * 16 15 14 34 34 H 0.97001 * 119.99288 * 359.97438 * 18 17 16 35 35 H 1.08003 * 120.06993 * 0.02562 * 22 21 19 36 36 H 1.08008 * 119.93638 * 180.23187 * 23 22 21 37 37 H 1.08002 * 119.93974 * 179.97438 * 26 24 23 38 38 H 1.08006 * 120.07022 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0887 -1.2008 -0.0010 9 8 1.3347 -2.3681 -0.0066 10 6 2.0691 -3.5025 -0.1195 11 6 3.4549 -3.4398 -0.1060 12 6 4.2013 -4.5968 -0.2153 13 6 3.5752 -5.8250 -0.3504 14 6 2.1988 -5.9061 -0.3716 15 6 1.4309 -4.7450 -0.2557 16 6 -0.0397 -4.8241 -0.2769 17 7 -0.7498 -3.7423 -0.1684 18 7 -2.1488 -3.8176 -0.1880 19 6 -2.8857 -2.6947 -0.0759 20 8 -2.3366 -1.6163 0.0427 21 6 -4.3608 -2.7743 -0.0961 22 6 -4.9942 -4.0107 -0.2372 23 6 -6.3713 -4.0790 -0.2510 24 6 -7.1260 -2.9233 -0.1355 25 17 -8.8594 -3.0166 -0.1611 26 6 -6.5035 -1.6934 -0.0001 27 6 -5.1271 -1.6127 0.0198 28 1 -0.4850 0.8401 0.0004 29 1 3.9505 -2.4857 -0.0051 30 1 5.2798 -4.5431 -0.1999 31 1 4.1678 -6.7235 -0.4394 32 1 1.7152 -6.8659 -0.4776 33 1 -0.5275 -5.7819 -0.3827 34 1 -2.5868 -4.6778 -0.2831 35 1 -4.4068 -4.9121 -0.3315 36 1 -6.8626 -5.0351 -0.3563 37 1 -7.0972 -0.7956 0.0890 38 1 -4.6427 -0.6531 0.1251 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043776669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:28 Heat of formation + Delta-G solvation = 47.545045 kcal Electronic energy + Delta-G solvation = -25943.012966 eV Core-core repulsion = 21972.175165 eV Total energy + Delta-G solvation = -3970.837802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.071 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.95565 -38.97609 -38.13446 -36.63660 -36.30906 -35.58090 -32.56494 -32.11192 -31.21671 -30.93128 -29.35978 -28.39262 -25.26285 -24.24535 -23.09901 -22.52090 -21.49711 -20.24582 -19.93432 -18.16232 -17.84330 -16.88660 -16.50428 -16.27524 -15.44949 -14.96774 -14.69229 -14.58058 -14.37756 -14.07804 -13.84747 -13.70585 -13.64476 -13.47020 -13.42268 -12.64415 -12.40411 -12.25373 -11.93166 -11.77664 -11.56688 -11.51578 -11.10245 -11.07031 -10.79129 -10.78521 -10.65621 -10.36802 -9.49734 -9.36862 -9.32385 -9.00580 -8.91989 -8.90787 -8.67920 -7.69207 -6.94505 -6.18847 -3.82806 0.57984 1.05770 1.70664 1.82219 2.46600 2.89698 3.02776 3.20739 3.21546 3.25218 3.32280 4.01909 4.05974 4.48174 4.59727 4.72163 4.74798 5.01414 5.12914 5.20049 5.27333 5.33163 5.37435 5.56590 5.69209 5.70851 5.88546 5.89677 5.95724 6.09325 6.15262 6.27794 6.46738 6.53511 6.75531 6.88299 7.15453 7.25926 7.41729 7.44756 7.70091 7.86214 8.09069 8.30198 9.08969 9.15391 9.83261 10.86323 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.011855 B = 0.002892 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.344248 B = 9678.036348 C =12025.249852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.045 3.955 3 Si 0.928 3.072 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.408 4.408 8 H 0.089 0.911 9 O -0.114 6.114 10 C 0.164 3.836 11 C -0.237 4.237 12 C -0.061 4.061 13 C -0.230 4.230 14 C -0.043 4.043 15 C -0.148 4.148 16 C 0.098 3.902 17 N -0.182 5.182 18 N -0.590 5.590 19 C 0.542 3.458 20 O -0.424 6.424 21 C -0.108 4.108 22 C -0.082 4.082 23 C -0.118 4.118 24 C -0.020 4.020 25 Cl -0.071 7.071 26 C -0.116 4.116 27 C -0.048 4.048 28 H 0.268 0.732 29 H 0.127 0.873 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.365 0.635 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.287 -9.254 -0.787 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.166 4.166 3 Si 0.753 3.247 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.484 4.484 8 H 0.106 0.894 9 O -0.010 6.010 10 C 0.104 3.896 11 C -0.256 4.256 12 C -0.080 4.080 13 C -0.250 4.250 14 C -0.063 4.063 15 C -0.153 4.153 16 C -0.110 4.110 17 N 0.012 4.988 18 N -0.334 5.334 19 C 0.326 3.674 20 O -0.290 6.290 21 C -0.113 4.113 22 C -0.101 4.101 23 C -0.137 4.137 24 C -0.047 4.047 25 Cl -0.042 7.042 26 C -0.135 4.135 27 C -0.067 4.067 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.202 0.798 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.716 -7.141 -0.559 13.732 hybrid contribution -0.019 -0.698 -0.181 0.722 sum -11.734 -7.839 -0.740 14.131 Atomic orbital electron populations 1.70274 1.04769 1.27034 1.39587 1.25350 0.95885 0.98379 0.96952 0.85927 0.79119 0.81095 0.78530 1.20093 1.20404 1.19382 1.21350 0.91632 0.81224 1.54210 0.89381 1.84174 1.33176 1.10794 1.72854 1.19445 0.89955 0.87864 0.92384 1.21121 0.93681 0.99051 1.11768 1.20836 0.98411 0.92439 0.96336 1.20391 0.94022 0.96966 1.13572 1.20631 0.93498 0.95445 0.96764 1.17311 0.88896 0.91696 1.17402 1.24243 0.94057 0.93460 0.99274 1.75922 0.86861 1.24005 1.11984 1.47004 1.03507 1.08750 1.74093 1.17911 0.85272 0.84504 0.79703 1.91174 1.71123 1.25771 1.40948 1.20285 0.93735 0.94216 1.03103 1.21305 0.93987 0.97187 0.97619 1.20944 0.93416 0.97607 1.01705 1.21144 0.84527 0.95376 1.03664 1.98375 1.10374 1.98688 1.96807 1.21060 0.94581 0.96589 1.01241 1.21334 0.92228 0.99137 0.93984 0.92195 0.85493 0.87623 0.87569 0.86935 0.88326 0.79776 0.84908 0.84489 0.84252 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -23.19 12.57 55.48 0.70 -22.49 16 2 C 0.05 1.25 5.49 -17.52 -0.10 1.16 16 3 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.41 -11.45 9.49 30.88 0.29 -11.16 16 8 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 9 O -0.11 -3.21 7.64 0.55 0.00 -3.21 16 10 C 0.16 3.97 6.66 -38.61 -0.26 3.71 16 11 C -0.24 -5.14 9.16 -39.45 -0.36 -5.50 16 12 C -0.06 -1.10 10.03 -39.52 -0.40 -1.50 16 13 C -0.23 -3.83 10.03 -39.60 -0.40 -4.23 16 14 C -0.04 -0.72 9.79 -39.17 -0.38 -1.11 16 15 C -0.15 -3.07 5.88 -104.89 -0.62 -3.69 16 16 C 0.10 1.88 10.75 -14.71 -0.16 1.73 16 17 N -0.18 -4.09 8.90 32.13 0.29 -3.80 16 18 N -0.59 -10.77 6.21 30.51 0.19 -10.58 16 19 C 0.54 10.55 7.89 -12.38 -0.10 10.46 16 20 O -0.42 -10.59 15.58 5.28 0.08 -10.50 16 21 C -0.11 -1.57 5.87 -104.97 -0.62 -2.18 16 22 C -0.08 -0.89 9.54 -39.19 -0.37 -1.27 16 23 C -0.12 -1.15 9.81 -39.61 -0.39 -1.53 16 24 C -0.02 -0.21 6.33 -39.38 -0.25 -0.46 16 25 Cl -0.07 -0.67 28.95 -51.86 -1.50 -2.17 16 26 C -0.12 -1.27 9.81 -39.61 -0.39 -1.66 16 27 C -0.05 -0.64 9.59 -39.19 -0.38 -1.02 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.10 1.41 8.02 -52.49 -0.42 0.99 16 34 H 0.36 4.85 6.68 -182.59 -1.22 3.63 16 35 H 0.13 1.12 6.40 -52.48 -0.34 0.78 16 36 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.15 2.13 7.65 -52.48 -0.40 1.73 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -34.35 355.04 -8.98 -43.33 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.20 Total: 6.53 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -4.86 Total: -18.24 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 1.17 Total: -36.88 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.35 -8.98 -43.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043776669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.872 kcal (2) G-P(sol) polarization free energy of solvation -34.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds