Wall clock time and date at job start Tue Mar 31 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31552 * 122.22916 * 2 1 4 4 C 1.29992 * 117.13808 * 179.97438 * 3 2 1 5 5 N 1.38735 * 125.36611 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99794 * 179.97438 * 5 4 3 7 7 O 1.21566 * 120.00100 * 0.02562 * 6 5 4 8 8 C 1.47836 * 119.99666 * 180.02562 * 6 5 4 9 9 C 1.39666 * 119.99366 * 180.02562 * 8 6 5 10 10 C 1.37705 * 120.00076 * 180.02562 * 9 8 6 11 11 C 1.39683 * 119.99933 * 359.97438 * 10 9 8 12 12 C 1.43205 * 120.00517 * 179.97438 * 11 10 9 13 13 N 9.88784 * 170.21700 * 180.02562 * 3 1 2 14 14 C 1.39693 * 119.99290 * 0.25114 * 11 10 9 15 15 C 1.37708 * 119.99570 * 359.47014 * 14 11 10 16 16 S 1.76140 * 109.26653 * 0.26210 * 4 3 2 17 17 C 1.34694 * 122.22897 * 179.97438 * 2 1 3 18 18 S 1.76202 * 125.93063 * 0.02562 * 17 2 1 19 19 C 1.76205 * 99.99939 * 179.97438 * 18 17 2 20 20 H 1.07999 * 119.99826 * 0.02562 * 19 18 17 21 21 C 1.38436 * 119.99856 * 179.97438 * 19 18 17 22 22 N 1.31799 * 120.00122 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99719 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46941 * 90.00528 * 23 21 19 25 25 H 1.48507 * 109.46835 * 210.00213 * 23 21 19 26 26 H 1.48492 * 109.46913 * 329.99998 * 23 21 19 27 27 H 1.09003 * 109.47034 * 90.02690 * 1 2 3 28 28 H 1.08998 * 109.46922 * 210.02592 * 1 2 3 29 29 H 1.09001 * 109.47072 * 330.02493 * 1 2 3 30 30 H 0.97000 * 119.99509 * 0.02562 * 5 4 3 31 31 H 1.07997 * 120.00179 * 359.97438 * 9 8 6 32 32 H 1.08003 * 119.99740 * 179.97438 * 10 9 8 33 33 H 1.08007 * 120.00317 * 179.72572 * 14 11 10 34 34 H 1.07999 * 119.99418 * 180.27294 * 15 14 11 35 35 H 0.97008 * 119.99909 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2086 1.1128 0.0000 4 6 3.5034 0.9975 0.0005 5 7 4.4036 2.0531 0.0001 6 6 5.7290 1.8084 0.0012 7 8 6.1356 0.6628 0.0022 8 6 6.6883 2.9333 0.0014 9 6 8.0617 2.6797 0.0020 10 6 8.9553 3.7274 0.0027 11 6 8.4882 5.0438 0.0021 12 6 9.4174 6.1334 0.0034 13 7 10.1545 6.9977 0.0008 14 6 7.1145 5.2973 0.0063 15 6 6.2210 4.2494 -0.0002 16 16 3.9348 -0.7103 -0.0065 17 6 2.2254 -1.1394 0.0005 18 16 1.5699 -2.7750 0.0006 19 6 3.0668 -3.7045 0.0006 20 1 4.0189 -3.1948 0.0009 21 6 3.0223 -5.0882 0.0012 22 7 1.8603 -5.7102 0.0013 23 14 4.6093 -6.0736 0.0019 24 1 5.0294 -6.3342 1.4021 25 1 4.3902 -7.3651 -0.6977 26 1 5.6695 -5.3050 -0.6983 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 4.0791 2.9672 -0.0003 31 1 8.4229 1.6619 0.0028 32 1 10.0174 3.5312 0.0036 33 1 6.7531 6.3151 0.0103 34 1 5.1590 4.4455 -0.0015 35 1 1.8292 -6.6798 0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044789174.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:20 Heat of formation + Delta-G solvation = 61.263476 kcal Electronic energy + Delta-G solvation = -22752.052636 eV Core-core repulsion = 19161.180376 eV Total energy + Delta-G solvation = -3590.872259 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 345.035 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83669 -39.30783 -38.49629 -36.83241 -35.00604 -32.86069 -32.26924 -31.70641 -30.41033 -27.17535 -25.98184 -25.77241 -23.65827 -22.96179 -21.38521 -20.04930 -19.52605 -18.46131 -17.76814 -17.12832 -16.23417 -15.63230 -15.62332 -15.42526 -15.13989 -15.04485 -14.54459 -14.27575 -14.16043 -14.02735 -13.80480 -13.28249 -13.23247 -12.77294 -12.74079 -12.65691 -12.13272 -11.91862 -11.70083 -11.42464 -11.29251 -11.13083 -10.92445 -10.66437 -10.29585 -10.04022 -9.68272 -9.60687 -9.53999 -9.13446 -8.80331 -8.70775 -7.85456 -6.63665 -6.54956 -4.31508 -0.18266 0.72423 1.33909 1.81472 2.06776 2.14864 2.46139 2.72850 2.78361 3.04717 3.08039 3.15134 3.27947 3.32016 3.34092 3.61880 3.94729 4.15005 4.21682 4.32224 4.61614 4.79289 4.80357 4.99370 5.00395 5.15895 5.34132 5.49457 5.63831 5.71166 5.93663 6.04466 6.11312 6.20168 6.39955 6.42893 6.87898 6.94682 7.07171 7.29559 7.79983 8.00435 8.45262 8.84832 10.41891 Molecular weight = 345.03amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.002570 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.707032 B =10893.500898 C =12611.056845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.471 5.471 4 C 0.181 3.819 5 N -0.606 5.606 6 C 0.545 3.455 7 O -0.496 6.496 8 C -0.093 4.093 9 C -0.056 4.056 10 C -0.075 4.075 11 C -0.005 4.005 12 C 0.252 3.748 13 N -0.409 5.409 14 C -0.075 4.075 15 C -0.087 4.087 16 S 0.204 5.796 17 C -0.250 4.250 18 S 0.155 5.845 19 C -0.557 4.557 20 H 0.089 0.911 21 C 0.082 3.918 22 N -0.861 5.861 23 Si 0.925 3.075 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.264 1.264 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.414 0.586 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.361 17.271 0.019 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.193 5.193 4 C -0.190 4.190 5 N -0.255 5.255 6 C 0.331 3.669 7 O -0.370 6.370 8 C -0.097 4.097 9 C -0.075 4.075 10 C -0.096 4.096 11 C -0.009 4.009 12 C -0.064 4.064 13 N -0.084 5.084 14 C -0.096 4.096 15 C -0.106 4.106 16 S 0.448 5.552 17 C -0.487 4.487 18 S 0.406 5.594 19 C -0.706 4.706 20 H 0.107 0.893 21 C -0.129 4.129 22 N -0.494 5.494 23 Si 0.750 3.250 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.188 1.188 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.252 0.748 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.257 16.970 0.003 18.872 hybrid contribution 0.817 0.124 0.010 0.826 sum 9.074 17.094 0.014 19.353 Atomic orbital electron populations 1.20123 0.87996 1.02155 1.01831 1.19025 0.96707 0.84534 1.12127 1.65792 1.02758 1.32470 1.18230 1.23655 0.89862 0.92743 1.12716 1.42172 1.04260 1.08292 1.70775 1.18297 0.81340 0.89348 0.77882 1.90808 1.77046 1.21571 1.47622 1.19937 0.94057 0.92598 1.03112 1.21276 0.90863 1.00698 0.94687 1.21197 1.00883 0.90054 0.97459 1.16177 0.90594 0.88943 1.05159 1.25662 0.93445 0.93196 0.94080 1.81289 1.09065 1.09932 1.08080 1.21108 0.90668 1.00204 0.97583 1.21296 1.00493 0.91062 0.97713 1.85828 1.01731 0.95233 1.72415 1.28810 1.01290 1.06800 1.11807 1.83095 1.11002 0.84344 1.80982 1.23275 0.93592 0.94050 1.59674 0.89275 1.25039 0.98320 0.96691 0.92870 1.70008 1.24425 1.10384 1.44623 0.86023 0.81209 0.78774 0.79038 1.19599 1.20275 1.18839 0.91842 0.91031 0.91897 0.74772 0.82983 0.83945 0.84036 0.84205 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.02 36.01 0.36 -0.67 16 2 C 0.02 0.38 6.73 -83.96 -0.57 -0.19 16 3 N -0.47 -8.90 10.55 -9.81 -0.10 -9.01 16 4 C 0.18 3.24 8.39 -87.31 -0.73 2.51 16 5 N -0.61 -7.90 5.34 -12.66 -0.07 -7.97 16 6 C 0.55 6.92 7.73 -12.33 -0.10 6.83 16 7 O -0.50 -8.18 13.84 5.31 0.07 -8.11 16 8 C -0.09 -0.78 5.88 -104.91 -0.62 -1.40 16 9 C -0.06 -0.42 9.58 -39.24 -0.38 -0.79 16 10 C -0.08 -0.43 9.73 -39.24 -0.38 -0.81 16 11 C -0.01 -0.03 5.73 -106.89 -0.61 -0.64 16 12 C 0.25 1.94 15.32 -22.47 -0.34 1.60 16 13 N -0.41 -4.20 18.54 41.83 0.78 -3.42 16 14 C -0.08 -0.36 9.73 -39.23 -0.38 -0.74 16 15 C -0.09 -0.49 9.52 -39.24 -0.37 -0.86 16 16 S 0.20 4.28 18.34 -107.50 -1.97 2.31 16 17 C -0.25 -5.55 6.68 29.48 0.20 -5.35 16 18 S 0.15 3.77 20.74 -107.50 -2.23 1.54 16 19 C -0.56 -14.77 9.26 30.81 0.29 -14.48 16 20 H 0.09 2.34 5.97 -52.49 -0.31 2.02 16 21 C 0.08 2.14 5.49 -17.49 -0.10 2.05 16 22 N -0.86 -23.23 13.22 55.47 0.73 -22.50 16 23 Si 0.92 20.19 29.55 -169.99 -5.02 15.16 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.20 7.38 -51.93 -0.38 0.81 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.41 3.83 6.84 -40.82 -0.28 3.55 16 31 H 0.15 1.15 7.64 -52.49 -0.40 0.75 16 32 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 33 H 0.14 0.39 8.06 -52.48 -0.42 -0.04 16 34 H 0.14 0.49 6.39 -52.49 -0.34 0.15 16 35 H 0.28 6.95 8.32 -40.82 -0.34 6.61 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -32.04 346.18 -8.87 -40.90 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -2.54 Total: -1.17 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.73 Total: -12.95 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 1.34 Total: -42.90 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.07 Total: -8.11 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 8.05 SS G_CDS: -4.20 Total: 3.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.04 -8.87 -40.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044789174.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.168 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds