Wall clock time and date at job start Tue Mar 31 2020 07:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00293 * 2 1 4 4 H 1.48500 * 109.47338 * 240.00368 * 3 2 1 5 5 H 1.48504 * 109.46990 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47182 * 120.00047 * 3 2 1 7 7 C 1.37881 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99505 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47041 * 179.97438 * 9 7 2 11 11 N 1.46892 * 109.46887 * 179.97438 * 10 9 7 12 12 C 1.46850 * 110.99842 * 190.00170 * 11 10 9 13 13 C 1.53041 * 109.52360 * 185.84119 * 12 11 10 14 14 C 1.53118 * 109.27850 * 300.82358 * 13 12 11 15 15 C 1.50700 * 109.52214 * 177.56214 * 14 13 12 16 16 O 1.21299 * 119.99651 * 335.12055 * 15 14 13 17 17 C 1.46862 * 120.00234 * 155.12906 * 15 14 13 18 18 C 1.40010 * 120.12238 * 359.97438 * 17 15 14 19 19 C 1.37603 * 119.93571 * 179.77778 * 18 17 15 20 20 C 1.39107 * 120.31003 * 0.22385 * 19 18 17 21 21 C 1.39350 * 120.08162 * 359.95393 * 20 19 18 22 22 C 1.38175 * 119.99074 * 0.11267 * 21 20 19 23 23 O 1.36159 * 120.75156 * 180.20539 * 21 20 19 24 24 C 1.43167 * 116.68789 * 342.77112 * 23 21 20 25 25 C 1.53468 * 108.21874 * 46.22503 * 24 23 21 26 26 O 1.35922 * 119.21334 * 179.80543 * 20 19 18 27 27 C 1.53113 * 109.21372 * 57.62165 * 14 13 12 28 28 C 1.46844 * 111.00587 * 314.21104 * 11 10 9 29 29 H 0.96996 * 119.99648 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46693 * 60.00319 * 9 7 2 31 31 H 1.08997 * 109.47277 * 300.00377 * 9 7 2 32 32 H 1.09002 * 109.46462 * 60.00201 * 10 9 7 33 33 H 1.09000 * 109.47203 * 300.00808 * 10 9 7 34 34 H 1.08998 * 109.46473 * 65.82564 * 12 11 10 35 35 H 1.08999 * 109.45546 * 305.84887 * 12 11 10 36 36 H 1.08995 * 109.50444 * 180.87753 * 13 12 11 37 37 H 1.09000 * 109.50412 * 60.76196 * 13 12 11 38 38 H 1.09005 * 109.52145 * 297.67996 * 14 13 12 39 39 H 1.08002 * 120.03563 * 0.06191 * 18 17 15 40 40 H 1.08001 * 119.84840 * 180.25403 * 19 18 17 41 41 H 1.08002 * 120.03614 * 179.89305 * 22 21 20 42 42 H 1.09002 * 109.71576 * 286.54502 * 24 23 21 43 43 H 1.08999 * 109.71491 * 165.90802 * 24 23 21 44 44 H 1.09002 * 109.70583 * 180.46849 * 25 24 23 45 45 H 1.09005 * 109.73699 * 59.87626 * 25 24 23 46 46 H 1.08999 * 109.50339 * 62.32030 * 27 14 13 47 47 H 1.08999 * 109.50300 * 182.43759 * 27 14 13 48 48 H 1.09003 * 109.46220 * 294.18161 * 28 11 10 49 49 H 1.09011 * 109.45647 * 54.15511 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 7 1.5106 -4.9343 -0.0012 12 6 2.4169 -6.0652 0.2357 13 6 1.6459 -7.3786 0.0854 14 6 0.4921 -7.4055 1.0916 15 6 -0.3069 -8.6700 0.9079 16 8 -0.3052 -9.2381 -0.1638 17 6 -1.0877 -9.2143 2.0264 18 6 -1.0913 -8.5608 3.2646 19 6 -1.8279 -9.0717 4.3086 20 6 -2.5667 -10.2384 4.1416 21 6 -2.5652 -10.8964 2.9133 22 6 -1.8272 -10.3912 1.8600 23 8 -3.2867 -12.0370 2.7336 24 6 -3.7162 -12.7193 3.9166 25 6 -4.3037 -11.6815 4.8825 26 8 -3.2832 -10.7255 5.1890 27 6 -0.4103 -6.1912 0.8561 28 6 0.4206 -4.9122 0.9826 29 1 -0.4849 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6246 -2.5571 0.8896 32 1 2.8724 -3.6048 0.8878 33 1 2.8712 -3.6040 -0.8922 34 1 2.8262 -5.9976 1.2437 35 1 3.2303 -6.0366 -0.4893 36 1 2.3152 -8.2174 0.2766 37 1 1.2480 -7.4533 -0.9266 38 1 0.8918 -7.3713 2.1052 39 1 -0.5200 -7.6541 3.3989 40 1 -1.8328 -8.5642 5.2619 41 1 -1.8241 -10.9015 0.9082 42 1 -2.8659 -13.2163 4.3837 43 1 -4.4779 -13.4557 3.6604 44 1 -4.6316 -12.1751 5.7974 45 1 -5.1492 -11.1787 4.4129 46 1 -0.8415 -6.2467 -0.1434 47 1 -1.2091 -6.1821 1.5977 48 1 0.8393 -4.8500 1.9871 49 1 -0.2158 -4.0462 0.8001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044894933.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:07 Heat of formation + Delta-G solvation = -86.479290 kcal Electronic energy + Delta-G solvation = -29676.250134 eV Core-core repulsion = 25568.672058 eV Total energy + Delta-G solvation = -4107.578076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.72345 -40.23919 -38.25709 -37.74006 -37.44506 -34.26689 -32.65808 -31.78559 -31.13187 -30.70401 -29.50949 -28.83396 -26.06259 -25.31344 -23.94267 -23.04171 -22.82751 -22.13221 -20.55311 -19.73958 -19.24443 -19.01767 -17.69991 -17.64075 -16.54340 -16.20945 -15.91533 -15.64837 -15.39818 -14.94567 -14.85698 -14.63484 -14.54961 -14.36044 -14.27603 -14.07564 -13.94860 -13.72049 -13.10044 -12.97501 -12.94666 -12.60512 -12.26615 -12.19768 -11.75740 -11.58538 -11.54769 -11.23178 -11.09789 -10.97373 -10.94607 -10.81788 -10.60905 -10.54694 -10.30487 -9.86538 -9.59314 -9.26290 -9.09184 -9.06873 -8.52686 -8.33469 -7.66450 -5.99979 -4.02125 0.32057 0.92285 2.13941 2.54391 2.70334 3.33754 3.38191 3.39412 3.40594 3.67719 3.87587 4.12619 4.28324 4.37256 4.39431 4.54576 4.60697 4.72501 4.77539 4.83395 4.90895 4.95116 4.97180 5.16570 5.29205 5.35978 5.44973 5.46243 5.63401 5.69369 5.72268 5.75415 5.84058 5.90164 5.93130 5.96235 6.10421 6.18067 6.30919 6.35766 6.38281 6.41183 6.55311 6.60052 6.91974 6.94447 7.43175 7.53417 7.63247 7.80732 7.86636 8.05770 8.43448 9.04270 9.61457 11.11331 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019818 B = 0.001933 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.527022 B =14483.957963 C =15392.129517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C 0.063 3.937 11 N -0.540 5.540 12 C 0.056 3.944 13 C -0.102 4.102 14 C -0.130 4.130 15 C 0.407 3.593 16 O -0.448 6.448 17 C -0.163 4.163 18 C -0.063 4.063 19 C -0.126 4.126 20 C 0.080 3.920 21 C 0.034 3.966 22 C -0.055 4.055 23 O -0.305 6.305 24 C 0.020 3.980 25 C 0.019 3.981 26 O -0.304 6.304 27 C -0.103 4.103 28 C 0.053 3.947 29 H 0.261 0.739 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.078 0.922 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.029 0.971 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 -26.636 11.586 29.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.064 4.064 11 N -0.265 5.265 12 C -0.072 4.072 13 C -0.139 4.139 14 C -0.149 4.149 15 C 0.284 3.716 16 O -0.323 6.323 17 C -0.165 4.165 18 C -0.081 4.081 19 C -0.145 4.145 20 C 0.034 3.966 21 C -0.011 4.011 22 C -0.073 4.073 23 O -0.220 6.220 24 C -0.056 4.056 25 C -0.057 4.057 26 O -0.218 6.218 27 C -0.141 4.141 28 C -0.075 4.075 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.163 0.837 42 H 0.096 0.904 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.599 -26.925 10.575 29.909 hybrid contribution 0.601 0.840 1.103 1.512 sum -6.998 -26.085 11.679 29.425 Atomic orbital electron populations 1.69952 1.05999 1.26718 1.50614 1.24993 0.94852 0.99184 0.95301 0.86649 0.79568 0.83125 0.78593 1.20216 1.21300 1.20325 1.21151 0.92975 0.91022 1.50918 0.92814 1.19248 0.94129 0.90507 0.97784 1.22311 0.96997 0.88068 0.99021 1.62026 1.11691 1.03600 1.49185 1.22040 0.95129 0.90789 0.99268 1.21490 0.95535 0.96920 1.00003 1.21731 0.97374 0.93894 1.01911 1.22389 0.78055 0.85155 0.85996 1.90520 1.56295 1.57986 1.27455 1.20323 1.02659 0.97230 0.96251 1.21327 0.96852 0.99110 0.90831 1.20433 0.99329 0.93786 1.00919 1.19259 0.95889 0.94504 0.86912 1.18727 0.98696 0.89227 0.94415 1.20647 0.93048 0.95250 0.98393 1.86365 1.68209 1.35516 1.31931 1.23652 1.01239 0.94631 0.86052 1.23701 0.89704 0.90305 1.01958 1.86282 1.47202 1.57667 1.30619 1.21586 0.97077 0.92384 1.03060 1.22173 0.94250 0.97754 0.93275 0.92934 0.95650 0.96132 0.96238 0.91898 0.95461 0.90862 0.91867 0.90013 0.88915 0.83606 0.83945 0.83678 0.90354 0.85831 0.85787 0.90102 0.90510 0.91210 0.95322 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.52 4.22 -27.88 -0.12 0.40 16 10 C 0.06 1.31 5.21 -3.83 -0.02 1.29 16 11 N -0.54 -9.72 4.81 -234.66 -1.13 -10.85 16 12 C 0.06 0.83 5.42 -3.83 -0.02 0.81 16 13 C -0.10 -1.34 4.96 -26.65 -0.13 -1.47 16 14 C -0.13 -1.57 1.87 -91.65 -0.17 -1.74 16 15 C 0.41 5.12 6.23 -30.82 -0.19 4.93 16 16 O -0.45 -6.86 16.03 5.54 0.09 -6.77 16 17 C -0.16 -1.81 5.87 -105.09 -0.62 -2.43 16 18 C -0.06 -0.58 9.35 -39.15 -0.37 -0.95 16 19 C -0.13 -1.14 9.94 -39.49 -0.39 -1.53 16 20 C 0.08 0.79 6.51 -38.85 -0.25 0.54 16 21 C 0.03 0.36 6.48 -39.19 -0.25 0.11 16 22 C -0.05 -0.62 9.50 -38.95 -0.37 -0.99 16 23 O -0.31 -2.93 10.42 -32.98 -0.34 -3.27 16 24 C 0.02 0.11 7.26 37.40 0.27 0.38 16 25 C 0.02 0.10 7.25 37.40 0.27 0.37 16 26 O -0.30 -2.66 10.40 -32.22 -0.34 -2.99 16 27 C -0.10 -1.39 5.36 -26.65 -0.14 -1.53 16 28 C 0.05 0.88 4.85 -3.83 -0.02 0.86 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.54 6.21 -51.93 -0.32 0.22 16 32 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.22 7.79 -51.93 -0.40 0.81 16 38 H 0.09 0.94 6.74 -51.93 -0.35 0.59 16 39 H 0.15 1.10 6.46 -52.49 -0.34 0.76 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.15 1.67 7.64 -52.49 -0.40 1.27 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.12 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.10 1.89 5.81 -51.92 -0.30 1.59 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -33.11 391.18 -10.62 -43.73 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -7.57 Total: -2.06 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -2.94 Total: -14.37 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.39 Total: -36.72 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.59 Total: -13.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.11 -10.62 -43.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044894933.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.749 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds