Wall clock time and date at job start Tue Mar 31 2020 05:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35958 * 117.00068 * 2 1 4 4 C 1.38552 * 120.08617 * 359.97438 * 3 2 1 5 5 C 1.38237 * 120.01414 * 180.02562 * 4 3 2 6 6 C 1.38298 * 120.19527 * 0.02562 * 5 4 3 7 7 C 1.38170 * 120.17477 * 359.73881 * 6 5 4 8 8 C 1.38792 * 119.97280 * 0.51424 * 7 6 5 9 9 N 1.40017 * 120.09368 * 179.76794 * 8 7 6 10 10 C 1.38368 * 119.80583 * 269.45061 * 9 8 7 11 11 C 1.32830 * 121.80488 * 180.25316 * 10 9 8 12 12 N 1.38284 * 121.00410 * 0.03844 * 11 10 9 13 13 C 1.35783 * 134.42020 * 179.97438 * 12 11 10 14 14 S 1.76199 * 126.36981 * 359.94293 * 13 12 11 15 15 C 1.76198 * 100.00036 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99759 * 0.02562 * 15 14 13 17 17 C 1.38700 * 120.00602 * 179.97438 * 15 14 13 18 18 N 1.31608 * 119.99906 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00592 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47213 * 89.99965 * 19 17 15 21 21 H 1.48496 * 109.47275 * 210.00214 * 19 17 15 22 22 H 1.48505 * 109.47222 * 330.00028 * 19 17 15 23 23 N 1.32223 * 107.24958 * 179.97438 * 13 12 11 24 24 N 1.28748 * 110.06889 * 359.97438 * 23 13 12 25 25 C 1.31505 * 109.65683 * 0.02562 * 24 23 13 26 26 C 1.35124 * 119.80995 * 89.71997 * 9 8 7 27 27 O 1.21798 * 120.75503 * 359.70382 * 26 9 8 28 28 H 1.08993 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46523 * 300.00010 * 1 2 3 30 30 H 1.09001 * 109.46874 * 59.99406 * 1 2 3 31 31 H 1.08002 * 119.99025 * 0.04525 * 4 3 2 32 32 H 1.08004 * 119.90181 * 179.97438 * 5 4 3 33 33 H 1.08005 * 119.91392 * 180.02562 * 6 5 4 34 34 H 1.07996 * 120.01189 * 180.25693 * 7 6 5 35 35 H 1.08002 * 119.09550 * 0.26839 * 10 9 8 36 36 H 1.08000 * 119.49807 * 179.97438 * 11 10 9 37 37 H 0.96991 * 120.00751 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2934 2.3745 -0.0005 5 6 1.9225 3.6054 -0.0011 6 6 3.3035 3.6808 -0.0016 7 6 4.0620 2.5259 0.0038 8 6 3.4378 1.2863 -0.0009 9 7 4.2040 0.1144 -0.0003 10 6 4.5753 -0.4652 -1.2007 11 6 5.2973 -1.5792 -1.2464 12 7 5.7093 -2.2092 -0.0864 13 6 6.4335 -3.3257 0.1830 14 16 7.1393 -4.4240 -1.0003 15 6 7.9000 -5.5898 0.0799 16 1 7.8234 -5.4645 1.1499 17 6 8.5961 -6.6691 -0.4438 18 7 8.6890 -6.8222 -1.7476 19 14 9.4019 -7.9055 0.7014 20 1 8.4402 -8.9939 1.0105 21 1 10.6038 -8.4788 0.0442 22 1 9.8024 -7.2266 1.9600 23 7 6.5097 -3.4357 1.4984 24 7 5.8819 -2.4622 2.0603 25 6 5.3691 -1.6762 1.1391 26 6 4.5720 -0.4470 1.1724 27 8 4.2493 0.0577 2.2329 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2148 2.3195 -0.0002 32 1 1.3339 4.5110 -0.0019 33 1 3.7903 4.6449 -0.0016 34 1 5.1402 2.5878 0.0076 35 1 4.2698 0.0010 -2.1257 36 1 5.5660 -1.9998 -2.2042 37 1 9.1761 -7.5767 -2.1140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046046987.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:35 Heat of formation + Delta-G solvation = 73.902327 kcal Electronic energy + Delta-G solvation = -26506.800674 eV Core-core repulsion = 22571.442267 eV Total energy + Delta-G solvation = -3935.358407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.073 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.76884 -41.09132 -39.47944 -37.68197 -37.08943 -34.58019 -32.79722 -31.29004 -30.57735 -30.12381 -29.28629 -27.60069 -25.93445 -24.80196 -23.89553 -22.57891 -22.33520 -21.85193 -19.13211 -18.93762 -18.27063 -17.75466 -17.31656 -16.86937 -16.07157 -16.02918 -15.71391 -15.30000 -15.19342 -15.03861 -14.67545 -14.58252 -13.93907 -13.80177 -13.51973 -13.09619 -12.92788 -12.53525 -12.40465 -11.97177 -11.60954 -11.54804 -11.48603 -11.23359 -11.19417 -10.92923 -10.65073 -10.45494 -10.37160 -10.12039 -9.87002 -9.37185 -9.07846 -9.05194 -8.59984 -8.08428 -6.95167 -6.59750 -4.34675 0.76696 1.02223 1.20450 1.63474 2.20324 2.33572 2.88147 3.07965 3.09489 3.18543 3.19417 3.27751 3.28770 3.60811 3.91064 4.24542 4.42207 4.46398 4.67415 4.72719 4.76671 4.82456 4.85831 4.88752 4.94618 4.98723 5.13923 5.19398 5.32759 5.53258 5.62545 5.79192 5.87527 6.03876 6.09455 6.21556 6.36353 6.47432 6.79871 6.99689 7.27820 7.45716 7.83135 8.25490 8.92397 9.07168 10.48137 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.025033 B = 0.002614 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.246017 B =10709.718467 C =10781.583660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.148 3.852 4 C -0.205 4.205 5 C -0.066 4.066 6 C -0.151 4.151 7 C -0.058 4.058 8 C 0.088 3.912 9 N -0.484 5.484 10 C 0.064 3.936 11 C 0.012 3.988 12 N -0.403 5.403 13 C 0.184 3.816 14 S 0.173 5.827 15 C -0.541 4.541 16 H 0.109 0.891 17 C 0.079 3.921 18 N -0.875 5.875 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.264 1.264 23 N -0.290 5.290 24 N -0.200 5.200 25 C 0.069 3.931 26 C 0.610 3.390 27 O -0.491 6.491 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.177 0.823 36 H 0.181 0.819 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.800 19.254 -5.562 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.101 3.899 4 C -0.225 4.225 5 C -0.084 4.084 6 C -0.170 4.170 7 C -0.078 4.078 8 C -0.001 4.001 9 N -0.204 5.204 10 C -0.055 4.055 11 C -0.107 4.107 12 N -0.096 5.096 13 C -0.182 4.182 14 S 0.408 5.592 15 C -0.689 4.689 16 H 0.127 0.873 17 C -0.131 4.131 18 N -0.509 5.509 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.188 1.188 23 N -0.140 5.140 24 N -0.047 5.047 25 C -0.195 4.195 26 C 0.399 3.601 27 O -0.360 6.360 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.195 0.805 36 H 0.198 0.802 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.427 18.590 -4.887 24.034 hybrid contribution -0.100 -0.261 0.552 0.619 sum -14.527 18.329 -4.335 23.786 Atomic orbital electron populations 1.23136 0.77889 1.04471 1.01364 1.86201 1.21740 1.26086 1.87804 1.19234 0.91026 0.85174 0.94511 1.21173 1.00276 0.91747 1.09272 1.21075 0.94696 0.97081 0.95593 1.20971 0.93741 0.98113 1.04144 1.21192 1.00699 0.90251 0.95619 1.16775 0.86518 0.85593 1.11263 1.42416 1.49186 1.23559 1.05249 1.21162 0.99877 0.94931 0.89516 1.20965 1.03854 0.95509 0.90382 1.43624 1.39345 1.19835 1.06839 1.28540 0.98015 0.91845 0.99835 1.83490 1.56218 1.17966 1.01563 1.23314 1.38625 1.10319 0.96653 0.87320 1.25099 0.94796 0.97203 0.96045 1.69912 1.39639 1.30455 1.10894 0.85873 0.78422 0.79639 0.80098 1.19760 1.20553 1.18804 1.75347 1.20351 1.16338 1.01918 1.74303 1.06028 0.99229 1.25126 1.24080 1.11023 1.01272 0.83165 1.16435 0.78774 0.81598 0.83281 1.90888 1.54094 1.62346 1.28718 0.87909 0.92397 0.92372 0.84700 0.85147 0.84937 0.84618 0.80545 0.80154 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.76 10.24 -19.61 -0.20 -3.96 16 3 C 0.15 1.72 6.70 -39.05 -0.26 1.46 16 4 C -0.21 -1.74 9.04 -39.47 -0.36 -2.10 16 5 C -0.07 -0.48 10.04 -39.56 -0.40 -0.88 16 6 C -0.15 -1.18 10.04 -39.58 -0.40 -1.58 16 7 C -0.06 -0.60 9.97 -39.40 -0.39 -0.99 16 8 C 0.09 1.12 4.46 -83.50 -0.37 0.74 16 9 N -0.48 -7.16 2.46 -61.35 -0.15 -7.32 16 10 C 0.06 0.78 10.24 -16.46 -0.17 0.61 16 11 C 0.01 0.18 10.94 -16.50 -0.18 0.00 16 12 N -0.40 -8.05 3.03 -61.13 -0.19 -8.23 16 13 C 0.18 4.30 8.17 -88.24 -0.72 3.58 16 14 S 0.17 4.12 21.86 -107.50 -2.35 1.77 16 15 C -0.54 -14.66 9.37 30.90 0.29 -14.37 16 16 H 0.11 3.06 6.92 -52.48 -0.36 2.69 16 17 C 0.08 2.07 5.49 -17.48 -0.10 1.97 16 18 N -0.87 -23.47 13.22 55.48 0.73 -22.74 16 19 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 23 N -0.29 -7.44 11.06 30.69 0.34 -7.10 16 24 N -0.20 -4.94 12.26 32.39 0.40 -4.55 16 25 C 0.07 1.50 8.12 -153.83 -1.25 0.26 16 26 C 0.61 11.79 7.62 -12.76 -0.10 11.69 16 27 O -0.49 -10.58 17.17 5.10 0.09 -10.49 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.14 0.81 6.30 -52.49 -0.33 0.48 16 32 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.18 1.32 8.05 -52.49 -0.42 0.90 16 36 H 0.18 2.05 8.06 -52.49 -0.42 1.62 16 37 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -35.37 347.46 -7.69 -43.06 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -3.16 Total: -2.96 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -3.41 Total: 1.58 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 1.13 Total: -49.93 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.11 Total: -14.45 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -2.35 Total: 1.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.37 -7.69 -43.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046046987.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.959 kcal (2) G-P(sol) polarization free energy of solvation -35.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds