Wall clock time and date at job start Tue Mar 31 2020 05:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 117.00121 * 2 1 4 4 C 1.38821 * 120.01636 * 0.24122 * 3 2 1 5 5 C 1.38185 * 120.08820 * 180.25339 * 4 3 2 6 6 C 1.38144 * 120.13211 * 359.48259 * 5 4 3 7 7 C 1.38928 * 120.03608 * 0.28223 * 6 5 4 8 8 N 1.39865 * 120.04823 * 179.97438 * 7 6 5 9 9 C 1.38417 * 119.80995 * 89.80450 * 8 7 6 10 10 C 1.32809 * 121.80235 * 179.71368 * 9 8 7 11 11 N 1.38301 * 121.00307 * 0.55309 * 10 9 8 12 12 C 1.35778 * 134.40751 * 179.76220 * 11 10 9 13 13 S 1.76197 * 126.38155 * 359.94595 * 12 11 10 14 14 C 1.76191 * 100.00399 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99784 * 359.97438 * 14 13 12 16 16 C 1.38717 * 120.00366 * 180.02562 * 14 13 12 17 17 N 1.31599 * 120.00226 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99595 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46893 * 90.00181 * 18 16 14 20 20 H 1.48503 * 109.46922 * 209.99849 * 18 16 14 21 21 H 1.48501 * 109.47108 * 330.00319 * 18 16 14 22 22 N 1.32233 * 107.24521 * 179.97438 * 12 11 10 23 23 N 1.28757 * 110.06711 * 0.02562 * 22 12 11 24 24 C 1.31503 * 109.65534 * 359.97438 * 23 22 12 25 25 C 1.35123 * 119.81263 * 270.08152 * 8 7 6 26 26 O 1.21788 * 120.75719 * 0.02562 * 25 8 7 27 27 C 1.38567 * 120.01926 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47345 * 299.99713 * 1 2 3 30 30 H 1.09004 * 109.47162 * 59.99589 * 1 2 3 31 31 H 1.07996 * 119.95262 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.93043 * 179.76278 * 5 4 3 33 33 H 1.08004 * 119.97969 * 180.25693 * 6 5 4 34 34 H 1.07999 * 119.09661 * 359.97438 * 9 8 7 35 35 H 1.08003 * 119.49523 * 180.27162 * 10 9 8 36 36 H 0.96998 * 119.99738 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.06710 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 0.0051 5 6 1.9160 3.6074 -0.0002 6 6 3.2953 3.6846 0.0002 7 6 4.0568 2.5226 0.0001 8 7 5.4533 2.6005 0.0000 9 6 6.1402 2.6428 1.2010 10 6 7.4657 2.7112 1.2471 11 7 8.2176 2.7546 0.0872 12 6 9.5465 2.8284 -0.1815 13 16 10.8497 2.8999 1.0021 14 6 12.2399 2.9769 -0.0775 15 1 12.0937 2.9688 -1.1476 16 6 13.5223 3.0469 0.4467 17 7 14.5606 3.1049 -0.3597 18 14 13.7752 3.0603 2.2975 19 1 13.9187 1.6658 2.7875 20 1 15.0035 3.8284 2.6237 21 1 12.6044 3.6971 2.9525 22 7 9.6806 2.8374 -1.4970 23 7 8.5240 2.7746 -2.0594 24 6 7.5867 2.7215 -1.1386 25 6 6.1239 2.6397 -1.1724 26 8 5.5262 2.6084 -2.2331 27 6 3.4297 1.2838 0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2118 2.3183 0.0086 32 1 1.3256 4.5117 -0.0001 33 1 3.7819 4.6488 0.0003 34 1 5.5832 2.6152 2.1258 35 1 7.9638 2.7379 2.2051 36 1 15.4573 3.1543 0.0069 37 1 4.0192 0.3789 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046047533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:40 Heat of formation + Delta-G solvation = 78.327969 kcal Electronic energy + Delta-G solvation = -25962.359131 eV Core-core repulsion = 22027.192635 eV Total energy + Delta-G solvation = -3935.166496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.073 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.95994 -41.08403 -39.95160 -37.74370 -37.16229 -34.59438 -32.76831 -31.49237 -30.86501 -30.26778 -29.27192 -27.71982 -26.07846 -24.92196 -24.08606 -23.05466 -22.31291 -21.88992 -19.32721 -19.16622 -18.34956 -17.54060 -17.04235 -16.80016 -16.51413 -16.18700 -16.15918 -15.71895 -15.46223 -15.19068 -14.84308 -14.21089 -14.08638 -13.88746 -13.64268 -13.12515 -13.05135 -12.72666 -12.52151 -12.22129 -12.00897 -11.55899 -11.50877 -11.39835 -11.37225 -11.24078 -10.82336 -10.61765 -10.34936 -10.21048 -9.95653 -9.41669 -9.25191 -9.14634 -8.67662 -8.28462 -7.30354 -6.54811 -4.37127 0.67647 0.97808 1.02017 1.45255 1.85475 2.09189 2.79429 2.85036 2.95672 3.04515 3.08376 3.17159 3.21686 3.45007 3.94295 4.05559 4.21268 4.32839 4.46859 4.55652 4.62894 4.68934 4.70581 4.77675 4.83475 4.93549 5.03968 5.06819 5.25114 5.38011 5.46243 5.76005 5.77125 5.93618 5.97306 6.02989 6.21230 6.40344 6.60179 6.91735 7.07899 7.64169 7.70012 8.50280 8.81373 8.91973 10.53734 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.027204 B = 0.002393 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.020370 B =11699.584619 C =12057.760390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.136 3.864 4 C -0.196 4.196 5 C -0.071 4.071 6 C -0.134 4.134 7 C 0.163 3.837 8 N -0.497 5.497 9 C 0.062 3.938 10 C 0.013 3.987 11 N -0.404 5.404 12 C 0.205 3.795 13 S 0.092 5.908 14 C -0.535 4.535 15 H 0.125 0.875 16 C 0.103 3.897 17 N -0.852 5.852 18 Si 0.843 3.157 19 H -0.260 1.260 20 H -0.262 1.262 21 H -0.239 1.239 22 N -0.272 5.272 23 N -0.195 5.195 24 C 0.073 3.927 25 C 0.608 3.392 26 O -0.483 6.483 27 C -0.132 4.132 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.182 0.818 35 H 0.183 0.817 36 H 0.277 0.723 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.721 -1.611 10.225 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.090 3.910 4 C -0.215 4.215 5 C -0.089 4.089 6 C -0.154 4.154 7 C 0.075 3.925 8 N -0.218 5.218 9 C -0.056 4.056 10 C -0.106 4.106 11 N -0.097 5.097 12 C -0.163 4.163 13 S 0.326 5.674 14 C -0.683 4.683 15 H 0.143 0.857 16 C -0.109 4.109 17 N -0.486 5.486 18 Si 0.667 3.333 19 H -0.185 1.185 20 H -0.186 1.186 21 H -0.163 1.163 22 N -0.121 5.121 23 N -0.042 5.042 24 C -0.191 4.191 25 C 0.397 3.603 26 O -0.351 6.351 27 C -0.152 4.152 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.199 0.801 35 H 0.200 0.800 36 H 0.088 0.912 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -27.013 -1.777 9.338 28.637 hybrid contribution -0.266 0.102 0.716 0.771 sum -27.279 -1.675 10.054 29.121 Atomic orbital electron populations 1.23106 0.77990 1.04257 1.01476 1.86099 1.21652 1.26472 1.88554 1.18688 0.91519 0.84533 0.96281 1.21376 1.00397 0.92198 1.07522 1.20820 0.93673 0.97414 0.97012 1.21238 0.93982 0.97782 1.02385 1.17057 0.80654 0.92921 1.01899 1.42675 1.04875 1.68765 1.05466 1.21221 0.91040 1.03895 0.89488 1.21006 0.89839 1.09358 0.90386 1.43690 1.05824 1.53231 1.06990 1.27698 0.86363 1.03058 0.99155 1.82835 0.94249 1.85447 1.04900 1.22604 0.88883 1.59633 0.97152 0.85725 1.24689 0.94633 0.93116 0.98447 1.69887 0.98804 1.44627 1.35232 0.87006 0.80980 0.80270 0.85043 1.18478 1.18647 1.16314 1.75471 1.13407 1.21710 1.01556 1.74409 0.94207 1.10667 1.24904 1.24115 0.94239 1.17734 0.83044 1.16418 0.83600 0.77065 0.83228 1.90927 1.68518 1.47166 1.28532 1.20468 0.91997 0.97842 1.04848 0.88010 0.92461 0.92422 0.84864 0.84733 0.85053 0.80110 0.80016 0.91195 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.85 10.49 -19.43 -0.20 -3.06 16 3 C 0.14 1.30 6.68 -39.24 -0.26 1.04 16 4 C -0.20 -1.48 9.04 -39.39 -0.36 -1.83 16 5 C -0.07 -0.53 10.03 -39.64 -0.40 -0.93 16 6 C -0.13 -1.30 9.97 -39.36 -0.39 -1.69 16 7 C 0.16 1.88 4.44 -83.71 -0.37 1.51 16 8 N -0.50 -6.56 2.70 -61.49 -0.17 -6.72 16 9 C 0.06 0.64 10.24 -16.44 -0.17 0.47 16 10 C 0.01 0.17 10.94 -16.50 -0.18 -0.01 16 11 N -0.40 -7.48 3.03 -61.13 -0.19 -7.67 16 12 C 0.20 4.55 8.17 -88.24 -0.72 3.83 16 13 S 0.09 2.01 19.83 -107.50 -2.13 -0.12 16 14 C -0.53 -14.56 9.92 30.91 0.31 -14.26 16 15 H 0.13 3.83 7.15 -52.48 -0.38 3.45 16 16 C 0.10 2.76 5.50 -17.47 -0.10 2.67 16 17 N -0.85 -24.14 13.97 55.49 0.77 -23.36 16 18 Si 0.84 18.37 27.73 -169.99 -4.71 13.66 16 19 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.24 -4.82 6.74 56.52 0.38 -4.44 16 22 N -0.27 -6.87 11.06 30.69 0.34 -6.53 16 23 N -0.19 -4.66 12.26 32.39 0.40 -4.27 16 24 C 0.07 1.49 8.12 -153.83 -1.25 0.24 16 25 C 0.61 10.86 7.62 -12.76 -0.10 10.76 16 26 O -0.48 -9.80 17.17 5.11 0.09 -9.71 16 27 C -0.13 -1.46 9.91 -39.23 -0.39 -1.85 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 30 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 31 H 0.13 0.64 6.29 -52.49 -0.33 0.31 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 34 H 0.18 1.00 8.05 -52.49 -0.42 0.58 16 35 H 0.18 1.70 8.06 -52.48 -0.42 1.27 16 36 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -35.06 345.07 -7.18 -42.24 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -3.19 Total: -0.72 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -3.38 Total: 1.06 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 1.16 Total: -48.55 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.12 Total: -12.77 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.71 Total: 13.66 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.13 Total: -0.12 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.06 -7.18 -42.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046047533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.568 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds