Wall clock time and date at job start Tue Mar 31 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35741 * 117.00018 * 2 1 4 4 C 1.39178 * 119.84097 * 359.97438 * 3 2 1 5 5 C 1.36542 * 120.39175 * 179.97438 * 4 3 2 6 6 C 1.40040 * 120.05734 * 0.02562 * 5 4 3 7 7 C 1.46738 * 120.15604 * 180.02562 * 6 5 4 8 8 C 1.35167 * 119.99704 * 359.97438 * 7 6 5 9 9 C 1.41808 * 119.99655 * 179.72176 * 8 7 6 10 10 O 1.21743 * 120.00125 * 0.28261 * 9 8 7 11 11 N 1.34777 * 120.00049 * 180.27618 * 9 8 7 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47219 * 90.00604 * 12 11 9 14 14 H 1.08001 * 119.99237 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00012 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99917 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99711 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46777 * 90.00409 * 17 15 13 19 19 H 1.48500 * 109.46934 * 210.00012 * 17 15 13 20 20 H 1.48492 * 109.47154 * 330.00133 * 17 15 13 21 21 C 1.46506 * 120.00000 * 0.02562 * 11 9 8 22 22 C 1.52998 * 109.47310 * 89.99371 * 21 11 9 23 23 C 1.47196 * 109.47161 * 179.97438 * 22 21 11 24 24 N 8.85539 * 70.80246 * 10.02969 * 2 1 3 25 25 C 1.40553 * 119.68512 * 0.28301 * 6 5 4 26 26 O 1.35692 * 120.18852 * 179.72042 * 25 6 5 27 27 C 1.42899 * 116.99798 * 179.97438 * 26 25 6 28 28 C 1.38406 * 119.61611 * 359.40030 * 25 6 5 29 29 H 1.09002 * 109.46738 * 59.99972 * 1 2 3 30 30 H 1.09002 * 109.46745 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47087 * 300.00010 * 1 2 3 32 32 H 1.08004 * 119.80438 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.97013 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.99804 * 180.02562 * 7 6 5 35 35 H 1.08002 * 120.00492 * 0.02562 * 8 7 6 36 36 H 1.09006 * 109.46623 * 210.00451 * 12 11 9 37 37 H 1.09003 * 109.47332 * 329.99937 * 12 11 9 38 38 H 0.97008 * 120.00090 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.46919 * 209.99782 * 21 11 9 40 40 H 1.09002 * 109.46502 * 329.99932 * 21 11 9 41 41 H 1.09004 * 109.47223 * 300.00537 * 22 21 11 42 42 H 1.08997 * 109.46785 * 60.00054 * 22 21 11 43 43 H 1.08994 * 109.47421 * 180.02562 * 27 26 25 44 44 H 1.09007 * 109.47281 * 300.00336 * 27 26 25 45 45 H 1.08997 * 109.47457 * 59.99810 * 27 26 25 46 46 H 1.07999 * 120.03632 * 180.29723 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2840 2.3746 -0.0005 5 6 1.8922 3.5971 0.0000 6 6 3.2898 3.6852 0.0005 7 6 3.9457 4.9979 0.0017 8 6 3.2005 6.1256 0.0016 9 6 3.8343 7.3942 0.0087 10 8 5.0495 7.4675 0.0096 11 7 3.0914 8.5187 0.0143 12 6 3.7461 9.8292 0.0210 13 6 3.9707 10.2858 -1.3975 14 1 3.6574 9.6619 -2.2215 15 6 4.5761 11.5000 -1.6432 16 7 4.9580 12.2593 -0.6397 17 14 4.8550 12.0656 -3.4015 18 1 3.6762 12.8407 -3.8649 19 1 6.0655 12.9238 -3.4592 20 1 5.0451 10.8821 -4.2779 21 6 1.6290 8.4304 0.0137 22 6 1.1197 8.3923 1.4559 23 6 -0.3496 8.3043 1.4553 24 7 -1.4829 8.2351 1.4565 25 6 4.0613 2.5104 -0.0055 26 8 5.4163 2.5839 -0.0108 27 6 6.1330 1.3477 -0.0162 28 6 3.4311 1.2782 0.0007 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2058 2.3114 -0.0005 33 1 1.2949 4.4968 0.0000 34 1 5.0237 5.0629 0.0016 35 1 2.1225 6.0606 0.0012 36 1 3.1123 10.5493 0.5386 37 1 4.7046 9.7538 0.5346 38 1 5.3836 13.1137 -0.8125 39 1 1.2128 9.2996 -0.4957 40 1 1.3201 7.5228 -0.5048 41 1 1.5360 7.5231 1.9654 42 1 1.4287 9.2998 1.9745 43 1 7.2042 1.5487 -0.0196 44 1 5.8742 0.7737 0.8737 45 1 5.8672 0.7774 -0.9062 46 1 4.0173 0.3711 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047339202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:27 Heat of formation + Delta-G solvation = -30.687532 kcal Electronic energy + Delta-G solvation = -28954.970143 eV Core-core repulsion = 24811.696946 eV Total energy + Delta-G solvation = -4143.273196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.84307 -39.40873 -39.23670 -37.08746 -36.81019 -35.20176 -33.60555 -32.74829 -30.82631 -30.76322 -29.81249 -27.81717 -27.57475 -26.87991 -24.40461 -23.91241 -22.83551 -22.09449 -20.39527 -19.09521 -18.14795 -17.64515 -17.12359 -16.86102 -16.46938 -16.34244 -16.28454 -15.82659 -15.57123 -15.30435 -15.04036 -14.64043 -14.30935 -14.19948 -14.11479 -13.54467 -13.39881 -13.11201 -12.95195 -12.78478 -12.45458 -12.40828 -12.38110 -12.18213 -12.00676 -11.94170 -11.69521 -11.36373 -11.23110 -11.16066 -11.10066 -10.92072 -10.79312 -10.54010 -10.14169 -9.81633 -9.62551 -8.98914 -8.90548 -8.42011 -7.89197 -7.63327 -6.03229 -4.07365 0.56202 1.12064 2.07153 2.75470 2.78184 2.84546 3.04371 3.32099 3.39094 3.43442 3.51777 3.76825 4.07915 4.32326 4.39782 4.46964 4.63582 4.68254 4.72379 4.76132 4.80423 4.89804 5.01748 5.06121 5.07898 5.16959 5.23628 5.26186 5.27673 5.31490 5.33169 5.54078 5.58157 5.85716 5.89069 5.94752 6.06391 6.15793 6.22546 6.47135 6.69900 6.89476 7.07389 7.13328 7.45121 7.52798 7.60498 7.93599 8.24309 8.37425 8.91924 9.09748 9.57867 11.04787 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.002747 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.351656 B =10189.896999 C =11995.303778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.173 3.827 4 C -0.244 4.244 5 C -0.025 4.025 6 C -0.134 4.134 7 C -0.009 4.009 8 C -0.223 4.223 9 C 0.541 3.459 10 O -0.540 6.540 11 N -0.595 5.595 12 C 0.244 3.756 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.119 3.881 22 C -0.053 4.053 23 C 0.219 3.781 24 N -0.448 5.448 25 C 0.189 3.811 26 O -0.300 6.300 27 C 0.024 3.976 28 C -0.248 4.248 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.122 0.878 36 H 0.034 0.966 37 H 0.047 0.953 38 H 0.263 0.737 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 -24.504 3.697 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.127 3.873 4 C -0.263 4.263 5 C -0.043 4.043 6 C -0.135 4.135 7 C -0.029 4.029 8 C -0.243 4.243 9 C 0.332 3.668 10 O -0.419 6.419 11 N -0.326 5.326 12 C 0.125 3.875 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.008 4.008 22 C -0.094 4.094 23 C -0.099 4.099 24 N -0.126 5.126 25 C 0.142 3.858 26 O -0.212 6.212 27 C -0.071 4.071 28 C -0.267 4.267 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.135 0.865 43 H 0.122 0.878 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.685 -24.381 3.740 25.836 hybrid contribution 0.192 0.287 -0.977 1.036 sum -7.493 -24.094 2.763 25.383 Atomic orbital electron populations 1.23120 0.77877 1.04088 1.01815 1.86015 1.21824 1.27037 1.87997 1.18844 0.91483 0.84200 0.92809 1.20842 1.00346 0.92041 1.13036 1.20816 0.92735 0.97670 0.93033 1.18343 0.92194 0.91410 1.11578 1.22142 1.00702 0.89350 0.90746 1.22236 1.00294 0.93503 1.08296 1.16953 0.87281 0.84501 0.78071 1.90809 1.13670 1.87554 1.49904 1.48127 1.04399 1.08604 1.71427 1.19330 0.93951 0.76628 0.97583 1.21437 1.39452 1.03184 0.92373 0.92377 1.24914 0.95299 0.96543 0.97287 1.69922 1.40884 1.12007 1.30553 0.86525 0.77659 0.78608 0.84816 1.20712 1.21145 1.19867 1.21303 0.82623 1.03957 0.92915 1.19955 0.81281 1.06417 1.01763 1.29128 0.95134 0.92690 0.92981 1.81170 1.13050 1.09553 1.08796 1.18830 0.82658 0.92326 0.92004 1.86128 1.14850 1.32853 1.87382 1.23161 0.97140 0.85230 1.01547 1.20292 0.92603 0.97483 1.16353 0.92272 0.88130 0.92291 0.85035 0.84387 0.84274 0.86039 0.94825 0.93497 0.92742 0.88897 0.90587 0.87365 0.86512 0.87755 0.92364 0.92352 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.80 101.05 0.99 1.13 16 2 O -0.32 -2.85 10.48 -18.93 -0.20 -3.05 16 3 C 0.17 1.73 6.69 -39.04 -0.26 1.47 16 4 C -0.24 -2.27 8.96 -39.84 -0.36 -2.63 16 5 C -0.02 -0.25 9.35 -39.52 -0.37 -0.62 16 6 C -0.13 -1.66 5.88 -104.92 -0.62 -2.28 16 7 C -0.01 -0.14 9.16 -37.24 -0.34 -0.48 16 8 C -0.22 -3.30 8.45 -39.31 -0.33 -3.64 16 9 C 0.54 10.67 7.45 -14.89 -0.11 10.56 16 10 O -0.54 -13.20 15.69 5.15 0.08 -13.12 16 11 N -0.59 -11.41 2.46 -178.40 -0.44 -11.85 16 12 C 0.24 5.95 5.16 -5.19 -0.03 5.92 16 13 C -0.53 -14.36 9.39 -34.44 -0.32 -14.69 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 17 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.12 1.65 5.05 -4.04 -0.02 1.63 16 22 C -0.05 -0.58 6.03 -29.52 -0.18 -0.75 16 23 C 0.22 2.67 15.43 -20.78 -0.32 2.35 16 24 N -0.45 -6.56 18.53 42.13 0.78 -5.78 16 25 C 0.19 2.21 6.70 -38.65 -0.26 1.96 16 26 O -0.30 -3.47 9.68 -18.78 -0.18 -3.65 16 27 C 0.02 0.17 9.81 101.05 0.99 1.16 16 28 C -0.25 -2.54 8.97 -39.33 -0.35 -2.90 16 29 H 0.06 0.27 7.65 -51.93 -0.40 -0.12 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 32 H 0.13 0.92 6.26 -52.48 -0.33 0.60 16 33 H 0.14 1.19 6.15 -52.49 -0.32 0.87 16 34 H 0.14 2.29 7.03 -52.49 -0.37 1.92 16 35 H 0.12 1.38 4.10 -52.49 -0.22 1.17 16 36 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 40 H 0.08 0.88 6.08 -51.93 -0.32 0.57 16 41 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.34 7.65 -51.92 -0.40 -0.06 16 45 H 0.06 0.35 7.68 -51.93 -0.40 -0.05 16 46 H 0.14 1.16 6.31 -52.49 -0.33 0.83 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -35.52 397.53 -6.17 -41.69 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.93 Total: -1.42 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.99 Total: -0.19 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 1.08 Total: -42.82 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.30 Total: -19.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.52 -6.17 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047339202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.002 kcal (2) G-P(sol) polarization free energy of solvation -35.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds