Wall clock time and date at job start Tue Mar 31 2020 05:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86804 * 119.99753 * 2 1 4 4 H 1.48504 * 109.46809 * 240.00198 * 3 2 1 5 5 H 1.48495 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46965 * 120.00258 * 3 2 1 7 7 C 1.38651 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00285 * 180.02562 * 7 2 1 9 9 O 1.34836 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00048 * 185.41154 * 9 7 2 11 11 C 1.38949 * 120.03304 * 172.67697 * 10 9 7 12 12 C 1.38120 * 120.07370 * 179.97438 * 11 10 9 13 13 C 1.38203 * 120.13580 * 0.02562 * 12 11 10 14 14 C 1.38924 * 120.06557 * 0.02562 * 13 12 11 15 15 N 1.39946 * 120.03143 * 179.97438 * 14 13 12 16 16 C 1.34771 * 120.00099 * 23.20533 * 15 14 13 17 17 O 1.21589 * 120.00248 * 350.57493 * 16 15 14 18 18 N 1.34783 * 119.99710 * 170.56456 * 16 15 14 19 19 C 1.47067 * 120.87068 * 183.55061 * 18 16 15 20 20 C 1.53688 * 108.30426 * 115.10214 * 19 18 16 21 21 C 1.51400 * 109.04619 * 45.69157 * 20 19 18 22 22 S 1.75898 * 125.06005 * 162.05470 * 21 20 19 23 23 C 1.75715 * 91.11438 * 179.57909 * 22 21 20 24 24 C 1.32922 * 109.59166 * 0.07893 * 23 22 21 25 25 C 1.34649 * 125.09955 * 341.80236 * 21 20 19 26 26 C 1.46969 * 120.87269 * 3.83859 * 18 16 15 27 27 C 1.38732 * 120.03539 * 352.94798 * 10 9 7 28 28 H 0.96997 * 120.00711 * 0.02562 * 1 2 3 29 29 H 1.08011 * 119.96595 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.93639 * 180.02562 * 12 11 10 31 31 H 1.07998 * 119.96620 * 179.97438 * 13 12 11 32 32 H 0.96999 * 119.99555 * 203.48676 * 15 14 13 33 33 H 1.08999 * 109.62254 * 234.82021 * 19 18 16 34 34 H 1.08995 * 109.62346 * 355.37650 * 19 18 16 35 35 H 1.09000 * 109.63891 * 285.76589 * 20 19 18 36 36 H 1.09001 * 109.52225 * 165.54296 * 20 19 18 37 37 H 1.08005 * 125.20701 * 180.10805 * 23 22 21 38 38 H 1.07998 * 122.17716 * 180.08104 * 24 23 22 39 39 H 1.09003 * 109.80383 * 344.63553 * 26 18 16 40 40 H 1.09002 * 109.80281 * 105.49992 * 26 18 16 41 41 H 1.08004 * 120.06635 * 0.03140 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3685 -0.0005 10 6 2.0695 -3.5042 0.1130 11 6 1.4350 -4.7300 0.2730 12 6 2.1817 -5.8862 0.3880 13 6 3.5619 -5.8279 0.3450 14 6 4.2023 -4.6053 0.1863 15 7 5.5999 -4.5471 0.1434 16 6 6.3091 -5.6368 -0.2114 17 8 5.7540 -6.7123 -0.3275 18 7 7.6339 -5.5342 -0.4378 19 6 8.4122 -6.6930 -0.9008 20 6 8.9400 -6.3875 -2.3115 21 6 9.5136 -4.9865 -2.3317 22 16 10.6123 -4.3620 -3.5552 23 6 10.6666 -2.7975 -2.7571 24 6 9.9001 -2.8242 -1.6714 25 6 9.2554 -4.0309 -1.4189 26 6 8.3395 -4.2632 -0.2226 27 6 3.4549 -3.4417 0.0751 28 1 -0.4851 0.8400 -0.0004 29 1 0.3565 -4.7788 0.3065 30 1 1.6862 -6.8377 0.5119 31 1 4.1431 -6.7336 0.4357 32 1 6.0582 -3.7237 0.3730 33 1 9.2490 -6.8659 -0.2240 34 1 7.7730 -7.5754 -0.9298 35 1 8.1243 -6.4578 -3.0310 36 1 9.7189 -7.1040 -2.5721 37 1 11.2353 -1.9445 -3.0969 38 1 9.7851 -1.9649 -1.0274 39 1 7.6188 -3.4490 -0.1459 40 1 8.9321 -4.3198 0.6906 41 1 3.9506 -2.4896 -0.0443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048516865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:52 Heat of formation + Delta-G solvation = 30.222290 kcal Electronic energy + Delta-G solvation = -26674.449423 eV Core-core repulsion = 22840.737251 eV Total energy + Delta-G solvation = -3833.712172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.098 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.87945 -39.21646 -38.42486 -36.58176 -35.49765 -34.44788 -32.45474 -32.12374 -29.83435 -29.25715 -28.42665 -26.08332 -25.25317 -24.19780 -22.98736 -21.81923 -21.49376 -19.90487 -18.79661 -18.52511 -17.83676 -17.33676 -16.91170 -16.21918 -15.80124 -15.36660 -15.02886 -14.90298 -14.72500 -14.35741 -14.11580 -13.96934 -13.60671 -13.46941 -13.43896 -13.04721 -12.96042 -12.80844 -12.30838 -12.10169 -11.92287 -11.71033 -11.59531 -11.48155 -11.28383 -11.05676 -11.00005 -10.77710 -10.45888 -9.94440 -9.47702 -9.35481 -9.01302 -8.86288 -8.77325 -8.63317 -7.63681 -7.07789 -6.42365 -4.02386 0.68052 1.29582 1.67530 2.10831 2.31861 2.42195 2.49090 3.11811 3.12271 3.16090 3.22893 3.74887 3.97268 4.33504 4.35957 4.63077 4.66098 4.86998 4.90591 4.97712 5.07887 5.11722 5.15625 5.34029 5.34193 5.46498 5.63303 5.70047 5.74236 5.90871 6.06991 6.10320 6.12154 6.15899 6.27484 6.43264 6.55695 6.83069 7.04747 7.14341 7.21261 7.41875 7.48774 7.89162 7.96226 8.02450 8.53262 9.02904 9.74600 10.75833 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.003066 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.248114 B = 9130.271798 C =11332.713715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.040 3.960 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.089 0.911 9 O -0.178 6.178 10 C 0.171 3.829 11 C -0.205 4.205 12 C -0.063 4.063 13 C -0.226 4.226 14 C 0.196 3.804 15 N -0.677 5.677 16 C 0.712 3.288 17 O -0.564 6.564 18 N -0.630 5.630 19 C 0.136 3.864 20 C -0.067 4.067 21 C -0.163 4.163 22 S 0.096 5.904 23 C -0.214 4.214 24 C -0.121 4.121 25 C -0.127 4.127 26 C 0.174 3.826 27 C -0.265 4.265 28 H 0.270 0.730 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.150 0.850 32 H 0.402 0.598 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.166 0.834 38 H 0.142 0.858 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.256 -8.140 -2.727 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.106 0.894 9 O -0.081 6.081 10 C 0.117 3.883 11 C -0.225 4.225 12 C -0.082 4.082 13 C -0.246 4.246 14 C 0.102 3.898 15 N -0.323 5.323 16 C 0.415 3.585 17 O -0.441 6.441 18 N -0.368 5.368 19 C 0.011 3.989 20 C -0.107 4.107 21 C -0.281 4.281 22 S 0.362 5.638 23 C -0.349 4.349 24 C -0.152 4.152 25 C -0.140 4.140 26 C 0.049 3.951 27 C -0.287 4.287 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.167 0.833 32 H 0.238 0.762 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.183 0.817 38 H 0.160 0.840 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 23.159 -9.273 -4.208 25.299 hybrid contribution 0.289 2.292 1.167 2.588 sum 23.448 -6.981 -3.041 24.653 Atomic orbital electron populations 1.70022 1.05909 1.27679 1.46278 1.25253 0.95808 0.98707 0.96678 0.85823 0.78746 0.80045 0.79031 1.19618 1.20273 1.19567 1.21208 0.91589 0.80939 1.53100 0.89391 1.84007 1.33950 1.11314 1.78874 1.19014 0.89264 0.88179 0.91841 1.20280 0.99714 0.90532 1.11982 1.20620 0.93331 0.96689 0.97558 1.21379 0.94550 0.97733 1.10975 1.17319 0.79556 0.94583 0.98362 1.42703 1.05840 1.13651 1.70131 1.15754 0.80590 0.84300 0.77884 1.90790 1.67876 1.26702 1.58715 1.47279 1.06416 1.11747 1.71335 1.21558 0.95309 0.88939 0.93051 1.20820 1.00460 0.90380 0.99047 1.24706 1.03794 1.00460 0.99129 1.84221 1.45149 1.05988 1.28450 1.25349 1.07459 1.01235 1.00843 1.19920 0.98501 0.98182 0.98603 1.19752 1.02106 0.93378 0.98741 1.20502 0.93875 0.86125 0.94632 1.20665 0.93989 0.97274 1.16751 0.92015 0.86544 0.86708 0.83293 0.76160 0.90724 0.87572 0.89479 0.89281 0.81677 0.84020 0.89085 0.89625 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.90 9.49 30.88 0.29 -10.61 16 8 H 0.09 2.24 5.21 -52.49 -0.27 1.96 16 9 O -0.18 -5.10 9.76 0.04 0.00 -5.10 16 10 C 0.17 4.20 6.64 -39.14 -0.26 3.94 16 11 C -0.21 -4.50 9.99 -39.36 -0.39 -4.89 16 12 C -0.06 -1.22 10.03 -39.64 -0.40 -1.62 16 13 C -0.23 -4.47 8.89 -39.34 -0.35 -4.82 16 14 C 0.20 3.83 6.49 -83.71 -0.54 3.28 16 15 N -0.68 -10.56 5.24 -14.24 -0.07 -10.63 16 16 C 0.71 10.84 8.22 -86.92 -0.71 10.12 16 17 O -0.56 -10.21 12.52 5.29 0.07 -10.14 16 18 N -0.63 -7.15 2.91 -178.50 -0.52 -7.66 16 19 C 0.14 1.26 6.44 -3.38 -0.02 1.24 16 20 C -0.07 -0.57 6.44 -27.18 -0.18 -0.74 16 21 C -0.16 -1.56 6.39 -35.23 -0.23 -1.78 16 22 S 0.10 0.82 23.31 -107.50 -2.51 -1.69 16 23 C -0.21 -1.73 11.20 28.89 0.32 -1.41 16 24 C -0.12 -1.04 10.00 -41.09 -0.41 -1.45 16 25 C -0.13 -1.20 5.86 -104.69 -0.61 -1.81 16 26 C 0.17 1.57 6.57 -4.07 -0.03 1.54 16 27 C -0.26 -5.78 9.05 -39.21 -0.35 -6.14 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 29 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 30 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.15 2.95 5.19 -52.67 -0.27 2.67 16 32 H 0.40 5.09 6.40 -40.82 -0.26 4.82 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.11 1.08 7.01 -51.93 -0.36 0.72 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.09 0.77 5.86 -51.93 -0.30 0.47 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.13 2.70 5.65 -52.48 -0.30 2.40 16 LS Contribution 353.93 15.07 5.33 5.33 Total: -1.00 -33.72 353.93 -10.22 -43.94 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -4.29 Total: 9.43 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -3.97 Total: -14.15 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.16 Total: -42.90 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.07 Total: -15.24 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.72 -10.22 -43.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048516865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.167 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds