Wall clock time and date at job start Tue Mar 31 2020 05:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48491 * 109.47235 * 240.00485 * 3 2 1 5 5 H 1.48509 * 109.46705 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47106 * 119.99860 * 3 2 1 7 7 C 1.38656 * 120.00411 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99856 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99735 * 359.97438 * 7 2 1 10 10 C 1.35745 * 116.99942 * 174.96627 * 9 7 2 11 11 C 1.38953 * 120.03699 * 5.36297 * 10 9 7 12 12 C 1.38117 * 120.07634 * 180.02562 * 11 10 9 13 13 C 1.38207 * 120.13429 * 359.70031 * 12 11 10 14 14 C 1.38913 * 120.06886 * 0.55259 * 13 12 11 15 15 N 1.39940 * 120.03718 * 179.75055 * 14 13 12 16 16 C 1.34778 * 119.99899 * 214.85411 * 15 14 13 17 17 O 1.21590 * 120.00109 * 355.48821 * 16 15 14 18 18 N 1.34782 * 120.00219 * 175.49446 * 16 15 14 19 19 C 1.46499 * 119.99844 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.46516 * 179.71877 * 19 18 16 21 21 C 1.50700 * 109.46661 * 179.97438 * 20 19 18 22 22 C 1.38250 * 119.97561 * 269.72657 * 21 20 19 23 23 C 1.38201 * 120.02439 * 179.72552 * 22 21 20 24 24 C 1.38461 * 119.97437 * 0.57387 * 23 22 21 25 25 F 1.35099 * 120.02669 * 179.68096 * 24 23 22 26 26 C 1.38460 * 119.94811 * 359.70035 * 24 23 22 27 27 C 1.38200 * 119.97405 * 0.02562 * 26 24 23 28 28 C 1.38737 * 120.03883 * 185.34347 * 10 9 7 29 29 H 0.96996 * 120.00622 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.95874 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.93588 * 180.02562 * 12 11 10 32 32 H 1.08006 * 119.96712 * 180.28346 * 13 12 11 33 33 H 0.96998 * 120.00613 * 34.84940 * 15 14 13 34 34 H 0.97000 * 119.99363 * 359.71423 * 18 16 15 35 35 H 1.09000 * 109.47161 * 299.71332 * 19 18 16 36 36 H 1.08993 * 109.47260 * 59.71776 * 19 18 16 37 37 H 1.08988 * 109.47353 * 299.99408 * 20 19 18 38 38 H 1.09001 * 109.47283 * 60.00282 * 20 19 18 39 39 H 1.07997 * 119.98443 * 359.97438 * 22 21 20 40 40 H 1.07996 * 120.01101 * 180.25456 * 23 22 21 41 41 H 1.07999 * 120.01520 * 179.97438 * 26 24 23 42 42 H 1.08002 * 119.98643 * 180.02562 * 27 26 24 43 43 H 1.08007 * 120.06239 * 0.03879 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2006 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5045 -0.1072 11 6 3.4580 -3.4381 -0.0978 12 6 4.2069 -4.5935 -0.2068 13 6 3.5788 -5.8195 -0.3193 14 6 2.1917 -5.8920 -0.3346 15 7 1.5564 -7.1333 -0.4538 16 6 0.4012 -7.2358 -1.1404 17 8 -0.1317 -6.2380 -1.5862 18 7 -0.1634 -8.4445 -1.3328 19 6 -1.4188 -8.5560 -2.0796 20 6 -1.8362 -10.0258 -2.1587 21 6 -3.1279 -10.1405 -2.9264 22 6 -4.3365 -10.0785 -2.2580 23 6 -5.5218 -10.1779 -2.9617 24 6 -5.4984 -10.3514 -4.3352 25 9 -6.6564 -10.4551 -5.0233 26 6 -4.2873 -10.4190 -5.0028 27 6 -3.1034 -10.3138 -4.2977 28 6 1.4367 -4.7331 -0.2253 29 1 -0.4851 0.8400 0.0004 30 1 3.9516 -2.4819 -0.0060 31 1 5.2855 -4.5394 -0.1989 32 1 4.1671 -6.7217 -0.3998 33 1 1.9475 -7.9198 -0.0424 34 1 0.2639 -9.2409 -0.9806 35 1 -2.1957 -7.9845 -1.5717 36 1 -1.2786 -8.1633 -3.0866 37 1 -1.0594 -10.5973 -2.6667 38 1 -1.9764 -10.4185 -1.1516 39 1 -4.3544 -9.9484 -1.1860 40 1 -6.4658 -10.1253 -2.4398 41 1 -4.2678 -10.5548 -6.0741 42 1 -2.1586 -10.3661 -4.8184 43 1 0.3580 -4.7872 -0.2332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048516920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:55 Heat of formation + Delta-G solvation = -46.765979 kcal Electronic energy + Delta-G solvation = -27464.906404 eV Core-core repulsion = 23197.475689 eV Total energy + Delta-G solvation = -4267.430715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.21861 -40.35290 -39.60707 -38.67204 -36.73772 -35.45453 -34.04058 -32.66253 -32.18871 -31.53923 -29.51466 -28.80584 -27.72786 -25.24904 -24.02526 -23.47058 -22.26261 -21.54911 -21.37821 -20.57311 -18.40168 -18.18824 -17.98974 -17.04609 -16.84391 -16.29235 -15.90289 -15.71998 -15.61206 -15.00192 -14.82660 -14.56307 -14.41208 -14.34047 -14.13498 -13.93267 -13.76869 -13.49339 -13.35002 -13.01234 -12.78707 -12.43155 -12.03635 -11.96694 -11.85179 -11.67823 -11.46031 -11.30804 -11.18050 -10.95453 -10.74383 -10.45071 -9.94351 -9.66422 -9.51481 -9.21432 -9.11391 -8.95127 -8.76431 -7.61745 -7.12993 -6.36830 -3.96077 0.70819 0.83176 2.13933 2.40116 2.67254 3.17093 3.17819 3.18815 3.21831 3.37758 3.89393 4.00816 4.15208 4.27291 4.44905 4.53049 4.64728 4.66595 4.70018 4.85408 5.05741 5.17064 5.17555 5.37782 5.47207 5.60947 5.62002 5.66737 5.73337 5.73519 5.82805 5.87961 6.11004 6.13997 6.27337 6.32894 6.46125 6.48645 6.58084 6.87882 7.07772 7.11626 7.27415 7.39702 7.54791 7.87096 8.06064 8.08528 8.71047 9.07845 9.80044 10.81105 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.001884 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.132765 B =14861.575829 C =16611.708044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.167 3.833 11 C -0.247 4.247 12 C -0.059 4.059 13 C -0.238 4.238 14 C 0.192 3.808 15 N -0.682 5.682 16 C 0.697 3.303 17 O -0.558 6.558 18 N -0.749 5.749 19 C 0.143 3.857 20 C -0.090 4.090 21 C -0.091 4.091 22 C -0.083 4.083 23 C -0.151 4.151 24 C 0.095 3.905 25 F -0.141 7.141 26 C -0.152 4.152 27 C -0.083 4.083 28 C -0.187 4.187 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.401 0.599 34 H 0.394 0.606 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 -25.005 -4.343 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.077 6.077 10 C 0.112 3.888 11 C -0.266 4.266 12 C -0.078 4.078 13 C -0.259 4.259 14 C 0.098 3.902 15 N -0.329 5.329 16 C 0.397 3.603 17 O -0.432 6.432 18 N -0.406 5.406 19 C 0.018 3.982 20 C -0.128 4.128 21 C -0.092 4.092 22 C -0.101 4.101 23 C -0.170 4.170 24 C 0.076 3.924 25 F -0.120 7.120 26 C -0.171 4.171 27 C -0.101 4.101 28 C -0.208 4.208 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.235 0.765 34 H 0.228 0.772 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.484 -23.872 -4.798 24.759 hybrid contribution 0.661 -0.018 0.155 0.680 sum -3.823 -23.890 -4.643 24.636 Atomic orbital electron populations 1.70042 1.05957 1.27695 1.45912 1.25298 0.95827 0.98813 0.96647 0.85785 0.78669 0.79841 0.79119 1.19517 1.20335 1.19541 1.21291 0.91771 0.80839 1.52892 0.89063 1.83991 1.34219 1.11316 1.78137 1.19148 0.89995 0.87874 0.91787 1.21172 0.93767 0.99052 1.12651 1.20476 0.98321 0.91672 0.97303 1.20234 0.91773 0.97683 1.16198 1.16944 0.90516 0.83224 0.99515 1.42449 1.24255 1.10217 1.55968 1.15971 0.80913 0.83854 0.79521 1.91040 1.63040 1.34937 1.54212 1.45067 1.26765 1.07405 1.61354 1.21163 0.84961 0.95083 0.96968 1.20772 0.94565 0.96590 1.00829 1.19719 0.94734 1.00848 0.93870 1.20975 0.90914 0.97772 1.00436 1.21174 1.00069 1.03352 0.92425 1.17771 0.81630 1.02768 0.90275 1.91506 1.47251 1.93547 1.79667 1.21165 0.91205 1.03623 1.01074 1.20962 0.97944 0.97841 0.93399 1.20197 1.00763 0.89165 1.10681 0.92010 0.85512 0.87090 0.87490 0.76473 0.77240 0.91131 0.91211 0.89975 0.89937 0.84740 0.84612 0.84645 0.84790 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.17 13.67 55.48 0.76 -25.41 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 8 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 9 O -0.17 -5.22 9.75 0.07 0.00 -5.21 16 10 C 0.17 4.27 6.64 -39.13 -0.26 4.01 16 11 C -0.25 -5.50 9.17 -39.36 -0.36 -5.86 16 12 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 13 C -0.24 -4.08 9.96 -39.34 -0.39 -4.47 16 14 C 0.19 3.62 6.30 -83.72 -0.53 3.10 16 15 N -0.68 -9.79 5.34 -14.24 -0.08 -9.87 16 16 C 0.70 10.85 8.41 -86.91 -0.73 10.12 16 17 O -0.56 -11.86 13.78 5.29 0.07 -11.79 16 18 N -0.75 -7.47 5.56 -65.22 -0.36 -7.83 16 19 C 0.14 1.34 5.66 -4.04 -0.02 1.31 16 20 C -0.09 -0.51 5.46 -27.88 -0.15 -0.66 16 21 C -0.09 -0.63 5.13 -104.62 -0.54 -1.17 16 22 C -0.08 -0.58 9.70 -39.59 -0.38 -0.97 16 23 C -0.15 -1.18 10.03 -39.51 -0.40 -1.57 16 24 C 0.09 0.84 7.30 -39.42 -0.29 0.55 16 25 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 26 C -0.15 -1.17 10.03 -39.51 -0.40 -1.56 16 27 C -0.08 -0.58 9.70 -39.59 -0.38 -0.96 16 28 C -0.19 -4.39 8.64 -39.21 -0.34 -4.73 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.13 2.80 5.63 -52.48 -0.30 2.50 16 31 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.40 3.90 8.84 -40.82 -0.36 3.54 16 34 H 0.39 2.40 8.49 -40.82 -0.35 2.05 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.36 8.08 -51.94 -0.42 -0.06 16 38 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.14 3.44 6.23 -52.48 -0.33 3.11 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -36.65 376.87 -9.24 -45.89 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.96 Total: 8.25 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -5.37 Total: -14.35 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.32 Total: -43.11 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.07 Total: -17.00 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.65 -9.24 -45.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048516920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.873 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds