Wall clock time and date at job start Tue Mar 31 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46894 * 109.47311 * 2 1 4 4 C 1.46898 * 111.00042 * 199.98558 * 3 2 1 5 5 C 1.50703 * 109.47087 * 66.04623 * 4 3 2 6 6 O 1.21280 * 120.00001 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99635 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99522 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47123 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99847 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00403 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99719 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00256 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47032 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46795 * 120.00022 * 13 11 9 16 16 H 1.48503 * 109.47283 * 239.99988 * 13 11 9 17 17 C 1.46898 * 111.00103 * 76.03173 * 3 2 1 18 18 C 1.50700 * 109.47181 * 199.68884 * 17 3 2 19 19 C 1.38264 * 119.97695 * 264.49051 * 18 17 3 20 20 C 1.38210 * 120.03972 * 180.02562 * 19 18 17 21 21 C 1.38348 * 119.99450 * 359.95527 * 20 19 18 22 22 Cl 1.73600 * 120.01711 * 180.29777 * 21 20 19 23 23 C 1.38445 * 119.96712 * 0.02562 * 21 20 19 24 24 Cl 1.73594 * 120.02456 * 180.02562 * 23 21 20 25 25 C 1.38207 * 119.98174 * 84.47152 * 18 17 3 26 26 H 1.08995 * 109.47123 * 294.87171 * 1 2 3 27 27 H 1.09001 * 109.46841 * 54.86873 * 1 2 3 28 28 H 1.09004 * 109.47042 * 174.86994 * 1 2 3 29 29 H 1.08998 * 109.46669 * 239.99763 * 2 1 3 30 30 H 1.09003 * 109.46672 * 120.00629 * 2 1 3 31 31 H 1.08999 * 109.46989 * 186.04747 * 4 3 2 32 32 H 1.08999 * 109.47052 * 306.04564 * 4 3 2 33 33 H 0.96996 * 120.00402 * 0.02562 * 7 5 4 34 34 H 1.08999 * 109.47349 * 299.99800 * 8 7 5 35 35 H 1.08999 * 109.47294 * 59.99986 * 8 7 5 36 36 H 0.97002 * 119.99974 * 180.02562 * 12 11 9 37 37 H 1.08999 * 109.47098 * 79.68665 * 17 3 2 38 38 H 1.09001 * 109.46872 * 319.68537 * 17 3 2 39 39 H 1.07993 * 119.98513 * 0.02562 * 19 18 17 40 40 H 1.07996 * 120.00354 * 180.02562 * 20 19 18 41 41 H 1.07996 * 119.99708 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4104 1.4516 -0.4687 5 6 3.4711 1.0498 -1.9199 6 8 2.4560 0.7382 -2.5059 7 7 4.6537 1.0359 -2.5663 8 6 4.7127 0.6459 -3.9772 9 6 6.1393 0.7142 -4.4581 10 1 6.9236 1.0174 -3.7804 11 6 6.4434 0.3886 -5.7629 12 7 5.4883 0.0190 -6.5881 13 14 8.2116 0.4740 -6.3591 14 1 9.0888 0.9147 -5.2450 15 1 8.6418 -0.8684 -6.8260 16 1 8.3098 1.4430 -7.4801 17 6 1.8832 1.9916 1.3308 18 6 1.9239 3.4928 1.2052 19 6 3.1149 4.1697 1.3927 20 6 3.1536 5.5465 1.2782 21 6 2.0004 6.2480 0.9750 22 17 2.0500 7.9767 0.8235 23 6 0.8080 5.5703 0.7868 24 17 -0.6398 6.4490 0.4056 25 6 0.7710 4.1921 0.9021 26 1 -0.3633 0.4322 0.9323 27 1 -0.3633 0.5914 -0.8405 28 1 -0.3633 -1.0236 -0.0919 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 3.7827 2.4700 -0.3577 32 1 4.0259 0.7733 0.1222 33 1 5.4657 1.2841 -2.0974 34 1 4.3397 -0.3722 -4.0887 35 1 4.0977 1.3249 -4.5679 36 1 5.7022 -0.2104 -7.5060 37 1 2.7021 1.6580 1.9680 38 1 0.9333 1.6896 1.7720 39 1 4.0154 3.6223 1.6287 40 1 4.0843 6.0745 1.4244 41 1 -0.1589 3.6627 0.7559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048611031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:11 Heat of formation + Delta-G solvation = -25.807546 kcal Electronic energy + Delta-G solvation = -24837.335562 eV Core-core repulsion = 20996.717198 eV Total energy + Delta-G solvation = -3840.618364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.080 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.09578 -39.03966 -37.26172 -36.74037 -36.42859 -34.13244 -32.37131 -32.15437 -31.28262 -30.58248 -28.17613 -26.71936 -24.80283 -23.26715 -22.52922 -22.09582 -20.87695 -19.62893 -17.59083 -17.28428 -16.35777 -16.20821 -15.86552 -15.45797 -15.30980 -14.82763 -14.58968 -14.41393 -14.14872 -14.01355 -13.78692 -13.51719 -13.05242 -12.57277 -12.48488 -12.18398 -12.10100 -11.96819 -11.86530 -11.74901 -11.70448 -11.44627 -11.25295 -11.16832 -11.04827 -10.94898 -10.93361 -10.68052 -10.31792 -9.38669 -9.22093 -9.00191 -8.90789 -8.74132 -8.31931 -7.86281 -6.17561 -4.24416 0.65201 0.84289 1.60946 1.97727 3.08191 3.22523 3.29657 3.32462 3.37969 3.73788 4.20138 4.32306 4.35851 4.50432 4.74022 4.78287 4.94034 5.07286 5.18335 5.19787 5.24190 5.26792 5.45069 5.48107 5.51665 5.59478 5.63362 5.67804 5.75006 5.88444 6.07582 6.18303 6.30182 6.37417 6.91854 7.02669 7.31775 7.44460 7.51770 7.66712 7.96522 8.62951 8.78480 9.11807 9.42482 10.92643 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.002681 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.028801 B =10440.945109 C =11924.659853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 N -0.514 5.514 4 C 0.031 3.969 5 C 0.498 3.502 6 O -0.536 6.536 7 N -0.715 5.715 8 C 0.252 3.748 9 C -0.542 4.542 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.903 3.097 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.090 3.910 18 C -0.056 4.056 19 C -0.100 4.100 20 C -0.098 4.098 21 C -0.033 4.033 22 Cl -0.054 7.054 23 C -0.030 4.030 24 Cl -0.052 7.052 25 C -0.074 4.074 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.028 0.972 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.389 0.611 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 9.218 21.816 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 N -0.238 5.238 4 C -0.100 4.100 5 C 0.282 3.718 6 O -0.414 6.414 7 N -0.364 5.364 8 C 0.131 3.869 9 C -0.581 4.581 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.730 3.270 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.038 4.038 18 C -0.057 4.057 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.061 4.061 22 Cl -0.025 7.025 23 C -0.058 4.058 24 Cl -0.023 7.023 25 C -0.093 4.093 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.046 0.954 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.221 0.779 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.770 9.407 20.785 24.442 hybrid contribution 1.795 0.027 0.198 1.806 sum -6.975 9.434 20.983 24.040 Atomic orbital electron populations 1.21708 0.94856 1.01488 1.01794 1.22208 0.96472 0.87567 1.01463 1.61624 1.19330 1.19635 1.23226 1.22092 0.90041 1.02704 0.95143 1.20242 0.84394 0.79044 0.88131 1.90653 1.34049 1.48391 1.68258 1.46454 1.07791 1.67298 1.14901 1.19076 0.97194 0.95954 0.74672 1.21259 0.92588 1.47633 0.96604 0.91905 1.24955 0.97875 0.94747 0.96468 1.69987 1.32148 1.44319 1.05775 0.86372 0.83966 0.77803 0.78836 1.19645 1.20822 1.20773 1.21126 1.02655 0.89429 0.90546 1.19848 0.92515 0.95894 0.97461 1.21166 0.98013 0.93421 0.99276 1.21007 0.96865 0.94160 0.99638 1.20781 0.94054 0.85765 1.05480 1.98389 1.98706 1.09225 1.96192 1.20775 0.87584 0.92697 1.04705 1.98391 1.35599 1.75781 1.92517 1.20899 0.99908 0.90586 0.97934 0.93626 0.91300 0.92536 0.88800 0.95379 0.88462 0.92363 0.77910 0.95647 0.95566 0.92504 0.93115 0.89066 0.84521 0.83991 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.96 37.16 0.37 -1.22 16 2 C 0.05 0.63 5.18 -3.82 -0.02 0.61 16 3 N -0.51 -6.49 4.09 -237.52 -0.97 -7.46 16 4 C 0.03 0.42 5.27 -4.98 -0.03 0.39 16 5 C 0.50 9.52 7.34 -10.98 -0.08 9.44 16 6 O -0.54 -12.39 14.54 5.56 0.08 -12.31 16 7 N -0.72 -14.59 5.55 -61.47 -0.34 -14.93 16 8 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 9 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 10 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.88 -25.97 13.29 55.43 0.74 -25.23 16 13 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C 0.09 0.82 4.94 -4.98 -0.02 0.79 16 18 C -0.06 -0.54 5.03 -104.62 -0.53 -1.06 16 19 C -0.10 -0.86 8.40 -39.58 -0.33 -1.19 16 20 C -0.10 -0.88 9.83 -39.55 -0.39 -1.27 16 21 C -0.03 -0.35 6.32 -39.46 -0.25 -0.60 16 22 Cl -0.05 -0.56 27.96 -51.86 -1.45 -2.01 16 23 C -0.03 -0.33 6.32 -39.46 -0.25 -0.58 16 24 Cl -0.05 -0.56 27.96 -51.86 -1.45 -2.01 16 25 C -0.07 -0.76 9.51 -39.55 -0.38 -1.14 16 26 H 0.04 0.42 6.91 -51.93 -0.36 0.06 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 1.51 5.85 -51.93 -0.30 1.21 16 30 H 0.03 0.30 8.00 -51.93 -0.42 -0.12 16 31 H 0.10 1.15 6.32 -51.93 -0.33 0.83 16 32 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 33 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.05 0.38 7.90 -51.93 -0.41 -0.03 16 38 H 0.09 0.73 6.56 -51.93 -0.34 0.39 16 39 H 0.14 0.87 7.98 -52.49 -0.42 0.45 16 40 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -31.91 373.08 -10.55 -42.46 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.41 Total: 2.67 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.35 Total: -2.48 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.58 Total: -47.62 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -2.90 Total: -4.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.91 -10.55 -42.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048611031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.653 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds