Wall clock time and date at job start Tue Mar 31 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35899 * 116.99912 * 2 1 4 4 C 1.38753 * 120.05511 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.94218 * 180.02562 * 4 3 2 6 6 C 1.38279 * 120.05533 * 0.02562 * 5 4 3 7 7 S 1.76200 * 119.94425 * 179.97438 * 6 5 4 8 8 O 1.42101 * 106.40183 * 336.46858 * 7 6 5 9 9 O 1.42096 * 106.40603 * 203.54468 * 7 6 5 10 10 N 1.65601 * 107.21514 * 90.00159 * 7 6 5 11 11 C 1.29044 * 120.00151 * 180.02562 * 10 7 6 12 12 O 1.34920 * 119.99908 * 359.97438 * 11 10 7 13 13 C 1.50699 * 120.00225 * 180.02562 * 11 10 7 14 14 S 1.81000 * 109.46881 * 0.02562 * 13 11 10 15 15 C 1.76206 * 99.99929 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99720 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99847 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00398 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99778 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46907 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47393 * 119.99621 * 19 17 15 22 22 H 1.48503 * 109.46784 * 240.00115 * 19 17 15 23 23 C 1.38244 * 120.11304 * 0.25689 * 6 5 4 24 24 C 1.38169 * 120.05451 * 359.44158 * 23 6 5 25 25 C 1.50697 * 120.02576 * 180.25341 * 24 23 6 26 26 H 1.08999 * 109.47029 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47244 * 300.00374 * 1 2 3 28 28 H 1.08991 * 109.46955 * 60.00177 * 1 2 3 29 29 H 1.07998 * 120.02931 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.96780 * 179.97438 * 5 4 3 31 31 H 0.96707 * 113.99539 * 0.02562 * 12 11 10 32 32 H 1.09000 * 109.47247 * 240.00137 * 13 11 10 33 33 H 1.09001 * 109.47358 * 119.99563 * 13 11 10 34 34 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 35 35 H 1.08001 * 119.96983 * 179.70786 * 23 6 5 36 36 H 1.09003 * 109.47277 * 270.31677 * 25 24 23 37 37 H 1.08997 * 109.47455 * 30.32271 * 25 24 23 38 38 H 1.08999 * 109.47087 * 150.32397 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0016 7 16 4.1018 5.2457 -0.0030 8 8 3.1702 6.1703 -0.5475 9 8 5.3973 5.0356 -0.5478 10 7 4.3250 5.6835 1.5785 11 6 4.8960 6.8052 1.8631 12 8 5.3117 7.6211 0.8722 13 6 5.0995 7.2033 3.3022 14 16 4.4428 5.9098 4.3847 15 6 4.8023 6.6161 5.9584 16 1 5.2911 7.5772 6.0200 17 6 4.4583 5.9368 7.1189 18 7 3.8631 4.7652 7.0438 19 14 4.8388 6.6859 8.7873 20 1 5.5055 7.9996 8.5996 21 1 3.5756 6.8752 9.5446 22 1 5.7384 5.7784 9.5438 23 6 4.0560 2.5171 -0.0070 24 6 3.4311 1.2848 -0.0002 25 6 4.2538 0.0222 -0.0002 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 0.2128 2.3203 -0.0005 30 1 1.3340 4.5113 -0.0019 31 1 5.1382 7.2808 -0.0162 32 1 4.5779 8.1403 3.4973 33 1 6.1643 7.3329 3.4963 34 1 3.6224 4.2906 7.8548 35 1 5.1344 2.5753 -0.0121 36 1 4.4519 -0.2823 -1.0279 37 1 5.1978 0.2036 0.5135 38 1 3.7065 -0.7681 0.5136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049020778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:13 Heat of formation + Delta-G solvation = -100.097911 kcal Electronic energy + Delta-G solvation = -25164.884513 eV Core-core repulsion = 21227.413428 eV Total energy + Delta-G solvation = -3937.471085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.058 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.52640 -39.88696 -37.73386 -37.21262 -35.92064 -34.05372 -33.09587 -32.48641 -30.64687 -29.63489 -27.93706 -26.94444 -25.58371 -22.98156 -22.19374 -21.98516 -20.07209 -18.36279 -18.28132 -17.84388 -17.47230 -16.85986 -16.10809 -15.88015 -15.67074 -15.00669 -14.85669 -14.78348 -14.47991 -14.19289 -14.04694 -13.71553 -13.39409 -13.31472 -12.81485 -12.71964 -12.45493 -12.40910 -12.37527 -12.24120 -12.10678 -12.01741 -11.54314 -11.14198 -11.11311 -11.05561 -10.85374 -10.83836 -10.59017 -10.04002 -9.84210 -9.13064 -9.10432 -8.61477 -8.30004 -6.58020 -6.28322 -3.99600 0.33226 0.81720 1.13365 1.48786 2.58131 2.90165 3.05380 3.17704 3.18983 3.24489 3.28824 3.45582 3.60987 4.13853 4.35257 4.51410 4.64174 4.82724 4.86702 5.02972 5.04906 5.07638 5.09275 5.17788 5.33534 5.36245 5.53190 5.57231 5.63272 5.63514 5.67011 5.85468 5.95738 5.97419 6.04607 6.13093 6.47579 7.02451 7.22799 7.55015 8.29172 9.18033 10.78582 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.003529 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.100478 B = 7931.315881 C = 9776.281067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.181 3.819 4 C -0.225 4.225 5 C 0.022 3.978 6 C -0.659 4.659 7 S 2.612 3.388 8 O -0.981 6.981 9 O -0.980 6.980 10 N -0.955 5.955 11 C 0.522 3.478 12 O -0.496 6.496 13 C -0.091 4.091 14 S -0.027 6.027 15 C -0.545 4.545 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.022 3.978 24 C -0.137 4.137 25 C -0.105 4.105 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.387 0.613 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.268 0.732 35 H 0.148 0.852 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.063 -6.237 -14.985 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.221 6.221 3 C 0.134 3.866 4 C -0.244 4.244 5 C 0.003 3.997 6 C -0.750 4.750 7 S 2.710 3.290 8 O -0.970 6.970 9 O -0.969 6.969 10 N -0.819 5.819 11 C 0.303 3.697 12 O -0.290 6.290 13 C -0.240 4.240 14 S 0.199 5.801 15 C -0.693 4.693 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.003 3.997 24 C -0.138 4.138 25 C -0.162 4.162 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.244 0.756 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.408 -7.268 -15.241 17.451 hybrid contribution 0.119 1.184 0.600 1.333 sum -4.289 -6.083 -14.641 16.425 Atomic orbital electron populations 1.23173 0.77849 1.04331 1.01907 1.86090 1.21860 1.26643 1.87466 1.19097 0.91973 0.84295 0.91244 1.21282 1.00477 0.91991 1.10692 1.20677 0.92148 0.98408 0.88500 1.29598 1.04487 1.18535 1.22382 1.04034 0.74634 0.75913 0.74394 1.93625 1.64694 1.60229 1.78448 1.93627 1.38495 1.86361 1.78415 1.73987 1.38017 1.26120 1.43765 1.24035 0.74404 0.79700 0.91552 1.85140 1.76575 1.49557 1.17678 1.22782 1.07101 1.07624 0.86537 1.85683 1.77243 1.20904 0.96242 1.23025 1.46094 1.08515 0.91665 0.90564 1.24956 0.94447 0.94710 0.99174 1.70004 1.38060 1.12935 1.29237 0.86120 0.78210 0.79139 0.82046 1.19513 1.20595 1.20580 1.20659 1.00114 0.89736 0.89238 1.19312 0.90712 0.96355 1.07466 1.20630 0.99157 0.93942 1.02422 0.87890 0.91983 0.92318 0.84331 0.83841 0.75599 0.86690 0.86671 0.92173 0.83451 0.91262 0.90967 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.40 9.54 -19.42 -0.19 -3.59 16 3 C 0.18 2.32 6.66 -39.22 -0.26 2.06 16 4 C -0.22 -2.79 9.04 -39.43 -0.36 -3.14 16 5 C 0.02 0.31 9.52 -39.61 -0.38 -0.06 16 6 C -0.66 -10.25 5.97 -39.56 -0.24 -10.49 16 7 S 2.61 43.07 4.24 -107.50 -0.46 42.62 16 8 O -0.98 -17.00 16.58 -58.38 -0.97 -17.97 16 9 O -0.98 -17.02 16.58 -58.37 -0.97 -17.98 16 10 N -0.95 -17.52 9.51 32.47 0.31 -17.21 16 11 C 0.52 9.11 7.95 -13.45 -0.11 9.01 16 12 O -0.50 -7.49 13.55 -17.20 -0.23 -7.73 16 13 C -0.09 -1.67 6.27 36.01 0.23 -1.45 16 14 S -0.03 -0.65 20.45 -107.50 -2.20 -2.85 16 15 C -0.54 -14.51 9.50 30.94 0.29 -14.22 16 16 H 0.08 1.92 7.80 -52.49 -0.41 1.51 16 17 C 0.08 2.07 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -24.84 13.22 55.49 0.73 -24.11 16 19 Si 0.92 20.54 29.55 -169.99 -5.02 15.52 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 C 0.02 0.32 9.17 -39.60 -0.36 -0.04 16 24 C -0.14 -1.83 5.89 -104.48 -0.62 -2.45 16 25 C -0.10 -1.12 9.79 36.00 0.35 -0.77 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 29 H 0.14 1.28 6.30 -52.49 -0.33 0.95 16 30 H 0.14 1.84 7.61 -52.49 -0.40 1.44 16 31 H 0.39 5.28 5.66 53.48 0.30 5.58 16 32 H 0.12 1.92 8.14 -51.92 -0.42 1.50 16 33 H 0.12 1.92 8.14 -51.91 -0.42 1.50 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.15 1.96 7.61 -52.49 -0.40 1.56 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -33.80 356.43 -7.84 -41.63 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -3.67 Total: 4.71 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -0.55 Total: -18.42 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 1.04 Total: -41.32 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -2.35 Total: -47.26 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 42.42 SS G_CDS: -2.65 Total: 39.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.80 -7.84 -41.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049020778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.466 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds