Wall clock time and date at job start Tue Mar 31 2020 07:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34174 * 125.44233 * 2 1 4 4 C 1.47013 * 105.95544 * 179.97438 * 3 2 1 5 5 C 1.47382 * 127.19162 * 179.97438 * 4 3 2 6 6 O 1.21615 * 119.99837 * 161.30701 * 5 4 3 7 7 N 1.34773 * 119.99894 * 341.30378 * 5 4 3 8 8 C 1.47074 * 120.88409 * 355.21308 * 7 5 4 9 9 C 1.53237 * 108.52443 * 231.16137 * 8 7 5 10 10 N 1.46903 * 109.34166 * 306.17224 * 9 8 7 11 11 C 1.46899 * 111.00046 * 187.25076 * 10 9 8 12 12 C 1.52995 * 109.46902 * 159.76919 * 11 10 9 13 13 H 1.09002 * 109.47307 * 54.69520 * 12 11 10 14 14 C 1.47199 * 109.47161 * 294.69185 * 12 11 10 15 15 N 9.12650 * 109.46624 * 351.43461 * 2 1 3 16 16 C 1.53002 * 109.46880 * 174.69596 * 12 11 10 17 17 C 1.50707 * 109.46853 * 185.00004 * 16 12 11 18 18 H 1.07997 * 120.00114 * 359.97438 * 17 16 12 19 19 C 1.37879 * 119.99753 * 179.97438 * 17 16 12 20 20 N 1.31520 * 120.00206 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00006 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46637 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47300 * 119.99770 * 21 19 17 24 24 H 1.48494 * 109.46899 * 239.99891 * 21 19 17 25 25 C 1.46894 * 111.26670 * 63.09988 * 10 9 8 26 26 C 1.47087 * 120.87872 * 175.19274 * 7 5 4 27 27 C 1.36418 * 105.61908 * 0.22936 * 4 3 2 28 28 C 1.50690 * 125.80391 * 179.75163 * 27 4 3 29 29 O 1.33653 * 108.39265 * 359.63083 * 27 4 3 30 30 H 1.09002 * 109.46819 * 90.00070 * 1 2 3 31 31 H 1.08991 * 109.47722 * 210.00312 * 1 2 3 32 32 H 1.09001 * 109.47397 * 330.00557 * 1 2 3 33 33 H 1.08007 * 127.01937 * 0.02562 * 3 2 1 34 34 H 1.08995 * 109.62871 * 350.87213 * 8 7 5 35 35 H 1.09000 * 109.63049 * 111.45479 * 8 7 5 36 36 H 1.09005 * 109.49446 * 66.13045 * 9 8 7 37 37 H 1.08997 * 109.49522 * 186.20858 * 9 8 7 38 38 H 1.09002 * 109.47435 * 279.77269 * 11 10 9 39 39 H 1.09000 * 109.46934 * 39.77112 * 11 10 9 40 40 H 1.08998 * 109.47163 * 304.99752 * 16 12 11 41 41 H 1.08994 * 109.47768 * 65.00229 * 16 12 11 42 42 H 0.96998 * 120.00205 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.49054 * 176.93409 * 25 10 9 44 44 H 1.09002 * 109.51722 * 56.87365 * 25 10 9 45 45 H 1.09007 * 109.62402 * 248.54576 * 26 7 5 46 46 H 1.08994 * 109.63213 * 9.12554 * 26 7 5 47 47 H 1.09001 * 109.47423 * 89.99851 * 28 27 4 48 48 H 1.09005 * 109.47354 * 209.99792 * 28 27 4 49 49 H 1.09003 * 109.47382 * 329.99741 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2851 1.0931 0.0000 4 6 3.6710 0.6027 0.0006 5 6 4.9025 1.4123 0.0003 6 8 5.9586 0.9129 0.3385 7 7 4.8583 2.7061 -0.3747 8 6 3.6147 3.3017 -0.8863 9 6 3.9208 4.0021 -2.2144 10 7 5.0289 4.9472 -2.0220 11 6 5.2405 5.7624 -3.2255 12 6 6.0122 7.0301 -2.8536 13 1 6.9345 6.7567 -2.3409 14 6 5.1863 7.8647 -1.9660 15 7 4.5484 8.5088 -1.2816 16 6 6.3479 7.8139 -4.1240 17 6 7.2123 8.9968 -3.7706 18 1 7.4937 9.1721 -2.7428 19 6 7.6439 9.8551 -4.7596 20 7 7.3017 9.6413 -6.0114 21 14 8.7160 11.3209 -4.3218 22 1 8.9574 11.3375 -2.8567 23 1 10.0134 11.2164 -5.0365 24 1 8.0289 12.5744 -4.7241 25 6 6.2625 4.2501 -1.6346 26 6 6.0524 3.5599 -0.2828 27 6 3.5790 -0.7584 -0.0043 28 6 4.7388 -1.7203 -0.0110 29 8 2.2852 -1.0936 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8898 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.9596 2.1230 0.0004 34 1 2.8732 2.5193 -1.0474 35 1 3.2343 4.0284 -0.1684 36 1 4.2018 3.2594 -2.9611 37 1 3.0367 4.5423 -2.5530 38 1 5.8122 5.1902 -3.9562 39 1 4.2760 6.0365 -3.6529 40 1 6.8835 7.1673 -4.8190 41 1 5.4265 8.1636 -4.5894 42 1 7.6056 10.2449 -6.7072 43 1 7.0768 4.9702 -1.5528 44 1 6.5114 3.5039 -2.3892 45 1 5.9063 4.3113 0.4933 46 1 6.9226 2.9482 -0.0448 47 1 5.0213 -1.9562 1.0150 48 1 4.4490 -2.6354 -0.5276 49 1 5.5853 -1.2653 -0.5254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051450847.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:26 Heat of formation + Delta-G solvation = 18.501405 kcal Electronic energy + Delta-G solvation = -29946.269643 eV Core-core repulsion = 25875.536623 eV Total energy + Delta-G solvation = -4070.733020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.99670 -40.17800 -38.32688 -36.42667 -34.79864 -33.74244 -33.35309 -33.28475 -31.64912 -31.26124 -29.81457 -28.26811 -26.24290 -25.25028 -24.28415 -23.44137 -22.56791 -21.75019 -21.63855 -20.52836 -18.51336 -17.48417 -16.89387 -16.77855 -16.51638 -16.25726 -16.09165 -15.34901 -15.12694 -14.83273 -14.66566 -14.42907 -14.35226 -13.90972 -13.77473 -13.65021 -13.47423 -13.38621 -13.04661 -12.96358 -12.88173 -12.69235 -12.42111 -12.18809 -11.96628 -11.91917 -11.66808 -11.42975 -11.24163 -11.21532 -11.20665 -11.06788 -10.69992 -10.52572 -10.24185 -10.15642 -9.88294 -9.56676 -9.25518 -8.93267 -8.67982 -8.47694 -8.25848 -6.11500 -4.14526 1.07967 1.63481 2.34393 2.79528 3.06823 3.27464 3.35836 3.40490 3.70188 3.81112 3.89495 4.06421 4.32973 4.40046 4.45305 4.73771 4.78034 4.81483 4.85830 4.94354 4.99613 5.04138 5.07252 5.11526 5.18270 5.22664 5.24770 5.26881 5.31156 5.42762 5.52468 5.55832 5.63893 5.66967 5.69925 5.77588 5.81431 5.93104 5.96398 6.00270 6.29602 6.33871 6.46963 6.71220 7.01332 7.05152 7.26761 7.40283 7.50275 7.84031 8.00328 8.21235 8.57401 8.90553 9.51209 10.99405 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.002072 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.929290 B =13508.503670 C =14023.903731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.198 4.198 4 C -0.238 4.238 5 C 0.591 3.409 6 O -0.545 6.545 7 N -0.602 5.602 8 C 0.087 3.913 9 C 0.042 3.958 10 N -0.541 5.541 11 C 0.063 3.937 12 C 0.013 3.987 13 H 0.099 0.901 14 C 0.257 3.743 15 N -0.481 5.481 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.039 3.961 26 C 0.117 3.883 27 C 0.074 3.926 28 C -0.077 4.077 29 O -0.175 6.175 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.170 0.830 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.026 0.974 42 H 0.262 0.738 43 H 0.096 0.904 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.077 0.923 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 -24.139 9.299 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 C -0.217 4.217 4 C -0.243 4.243 5 C 0.381 3.619 6 O -0.425 6.425 7 N -0.335 5.335 8 C -0.036 4.036 9 C -0.087 4.087 10 N -0.266 5.266 11 C -0.066 4.066 12 C -0.009 4.009 13 H 0.117 0.883 14 C -0.059 4.059 15 N -0.158 5.158 16 C -0.008 4.008 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.089 4.089 26 C -0.005 4.005 27 C 0.021 3.979 28 C -0.133 4.133 29 O -0.072 6.072 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.187 0.813 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.114 0.886 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.990 -23.321 10.721 28.329 hybrid contribution 1.035 0.550 -0.870 1.460 sum -10.955 -22.771 9.850 27.121 Atomic orbital electron populations 1.20365 0.84578 1.04353 1.03856 1.22334 0.94056 0.83672 1.05790 1.22959 0.90770 0.99726 1.08255 1.21089 0.93898 0.93212 1.16056 1.17216 0.86955 0.80950 0.76762 1.90760 1.30971 1.71208 1.49516 1.47899 1.12336 1.09543 1.63735 1.22679 0.86964 0.98365 0.95592 1.22480 0.95528 0.94542 0.96135 1.61970 1.05492 1.23286 1.35848 1.22250 1.01120 0.93144 0.90046 1.19208 0.94593 0.90953 0.96169 0.88283 1.28840 0.92654 0.92162 0.92280 1.80975 1.11425 1.11392 1.12004 1.19180 0.97642 0.94704 0.89255 1.21174 1.31415 1.09800 0.93903 0.92431 1.24959 0.96228 0.97871 0.94958 1.69946 1.45396 1.37867 0.99841 0.86537 0.80226 0.82624 0.78719 1.19656 1.20857 1.20974 1.22552 0.93099 0.97298 0.96000 1.21768 0.88048 0.93112 0.97563 1.22732 0.82919 0.93948 0.98265 1.20519 0.91752 0.96544 1.04490 1.83700 1.16147 1.35675 1.71663 0.89783 0.90383 0.89015 0.81290 0.87119 0.90527 0.94298 0.89415 0.92484 0.90251 0.94490 0.95605 0.92852 0.88618 0.94075 0.90572 0.88551 0.89122 0.90404 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.40 36.01 0.37 0.06 16 2 C -0.01 -0.08 7.28 -35.74 -0.26 -0.34 16 3 C -0.20 -1.73 8.68 -37.46 -0.32 -2.05 16 4 C -0.24 -2.64 5.96 -103.28 -0.62 -3.25 16 5 C 0.59 7.60 7.62 -12.54 -0.10 7.51 16 6 O -0.54 -8.25 14.76 5.26 0.08 -8.18 16 7 N -0.60 -7.03 3.01 -173.75 -0.52 -7.55 16 8 C 0.09 0.84 5.43 -3.61 -0.02 0.82 16 9 C 0.04 0.44 5.59 -3.70 -0.02 0.42 16 10 N -0.54 -6.83 4.26 -234.32 -1.00 -7.83 16 11 C 0.06 0.88 4.37 -3.83 -0.02 0.87 16 12 C 0.01 0.23 2.27 -93.41 -0.21 0.02 16 13 H 0.10 1.67 6.69 -51.93 -0.35 1.32 16 14 C 0.26 5.23 13.67 -20.77 -0.28 4.95 16 15 N -0.48 -10.65 18.54 42.15 0.78 -9.87 16 16 C 0.03 0.70 4.42 -27.88 -0.12 0.57 16 17 C -0.52 -13.80 8.60 -34.44 -0.30 -14.09 16 18 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 C 0.04 0.46 5.45 -3.71 -0.02 0.44 16 26 C 0.12 1.38 6.61 -3.60 -0.02 1.35 16 27 C 0.07 0.75 7.37 -34.97 -0.26 0.49 16 28 C -0.08 -0.61 9.76 36.00 0.35 -0.26 16 29 O -0.17 -1.68 10.52 7.64 0.08 -1.60 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.17 1.15 5.80 -52.48 -0.30 0.85 16 34 H 0.11 0.91 3.51 -51.93 -0.18 0.73 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 38 H 0.06 0.76 8.00 -51.93 -0.42 0.34 16 39 H 0.08 1.11 7.77 -51.93 -0.40 0.70 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 43 H 0.10 1.12 6.63 -51.93 -0.34 0.77 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.10 1.16 7.04 -51.93 -0.37 0.79 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.10 0.92 7.01 -51.93 -0.36 0.56 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -33.18 399.98 -8.10 -41.28 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -7.32 Total: -2.97 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.94 Total: -0.91 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.00 Total: -49.83 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.16 Total: -9.77 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.18 -8.10 -41.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051450847.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.782 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds