Wall clock time and date at job start Tue Mar 31 2020 07:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34180 * 125.44161 * 2 1 4 4 C 1.47015 * 105.95546 * 180.02562 * 3 2 1 5 5 C 1.47384 * 127.19246 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00023 * 151.12346 * 5 4 3 7 7 N 1.34777 * 119.99756 * 331.12529 * 5 4 3 8 8 C 1.47082 * 120.88013 * 184.64121 * 7 5 4 9 9 C 1.53691 * 108.27925 * 128.75208 * 8 7 5 10 10 N 1.46903 * 109.25984 * 54.08025 * 9 8 7 11 11 C 1.46896 * 111.00185 * 172.60802 * 10 9 8 12 12 C 1.53004 * 109.46835 * 190.75145 * 11 10 9 13 13 H 1.09004 * 109.47155 * 302.67721 * 12 11 10 14 14 C 1.47197 * 109.47240 * 62.67944 * 12 11 10 15 15 N 8.81411 * 107.01871 * 343.48801 * 2 1 3 16 16 C 1.53001 * 109.46970 * 182.67895 * 12 11 10 17 17 C 1.50700 * 109.46958 * 175.00033 * 16 12 11 18 18 H 1.07997 * 120.00293 * 359.97438 * 17 16 12 19 19 C 1.37884 * 119.99595 * 179.97438 * 17 16 12 20 20 N 1.31516 * 119.99454 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00080 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46935 * 89.99993 * 21 19 17 23 23 H 1.48499 * 109.46931 * 209.99804 * 21 19 17 24 24 H 1.48504 * 109.47046 * 329.99869 * 21 19 17 25 25 C 1.46901 * 111.26493 * 296.76174 * 10 9 8 26 26 C 1.47075 * 120.88319 * 4.91404 * 7 5 4 27 27 C 1.36416 * 105.61733 * 359.97438 * 4 3 2 28 28 C 1.50699 * 125.80270 * 179.97438 * 27 4 3 29 29 O 1.33649 * 108.39551 * 359.73846 * 27 4 3 30 30 H 1.09000 * 109.47360 * 90.00082 * 1 2 3 31 31 H 1.08994 * 109.47080 * 210.00296 * 1 2 3 32 32 H 1.08997 * 109.46921 * 330.00334 * 1 2 3 33 33 H 1.07996 * 127.02103 * 359.95857 * 3 2 1 34 34 H 1.09001 * 109.62790 * 248.51972 * 8 7 5 35 35 H 1.08998 * 109.62728 * 9.09872 * 8 7 5 36 36 H 1.09004 * 109.65095 * 294.07980 * 9 8 7 37 37 H 1.08998 * 109.42039 * 173.94848 * 9 8 7 38 38 H 1.09000 * 109.47352 * 310.74961 * 11 10 9 39 39 H 1.08997 * 109.47058 * 70.75513 * 11 10 9 40 40 H 1.09000 * 109.46793 * 295.00075 * 16 12 11 41 41 H 1.09003 * 109.47076 * 54.99693 * 16 12 11 42 42 H 0.97001 * 119.99499 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.49461 * 303.13397 * 25 10 9 44 44 H 1.09000 * 109.48867 * 183.06399 * 25 10 9 45 45 H 1.09006 * 109.63234 * 350.89626 * 26 7 5 46 46 H 1.08996 * 109.63184 * 111.47682 * 26 7 5 47 47 H 1.08996 * 109.47314 * 89.99839 * 28 27 4 48 48 H 1.09000 * 109.47188 * 210.00416 * 28 27 4 49 49 H 1.08999 * 109.47056 * 330.00275 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4124 -0.0014 6 8 5.9175 0.9759 0.5068 7 7 4.9038 2.6366 -0.5652 8 6 6.1449 3.4193 -0.6674 9 6 6.3033 3.8839 -2.1238 10 7 5.0863 4.5928 -2.5414 11 6 5.2617 5.2052 -3.8651 12 6 4.0912 6.1486 -4.1497 13 1 3.1543 5.5954 -4.0836 14 6 4.0880 7.2389 -3.1607 15 7 4.0867 8.0806 -2.3954 16 6 4.2391 6.7352 -5.5550 17 6 3.0258 7.5669 -5.8823 18 1 2.2287 7.6668 -5.1605 19 6 2.9333 8.2004 -7.1035 20 7 1.8747 8.9267 -7.3890 21 14 4.3123 8.0283 -8.3518 22 1 4.0493 6.8533 -9.2209 23 1 4.3811 9.2552 -9.1856 24 1 5.6025 7.8397 -7.6412 25 6 3.9183 3.7021 -2.5239 26 6 3.6632 3.2276 -1.0894 27 6 3.5789 -0.7583 -0.0004 28 6 4.7389 -1.7203 -0.0014 29 8 2.2852 -1.0935 0.0061 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.9596 2.1229 -0.0006 34 1 6.0869 4.2853 -0.0079 35 1 6.9944 2.7972 -0.3856 36 1 6.4602 3.0196 -2.7693 37 1 7.1590 4.5547 -2.1992 38 1 6.1949 5.7681 -3.8842 39 1 5.2924 4.4247 -4.6253 40 1 5.1305 7.3613 -5.5954 41 1 4.3307 5.9255 -6.2789 42 1 1.8094 9.3721 -8.2482 43 1 4.1083 2.8404 -3.1637 44 1 3.0443 4.2412 -2.8896 45 1 2.8712 2.4787 -1.0868 46 1 3.3712 4.0754 -0.4697 47 1 5.0196 -1.9521 1.0260 48 1 4.4500 -2.6374 -0.5148 49 1 5.5862 -1.2673 -0.5160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051450848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:31 Heat of formation + Delta-G solvation = 22.366733 kcal Electronic energy + Delta-G solvation = -30194.931410 eV Core-core repulsion = 26124.366003 eV Total energy + Delta-G solvation = -4070.565407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.96944 -40.20882 -38.42615 -36.47622 -34.80126 -33.78675 -33.32591 -33.27654 -31.82988 -31.21829 -29.83487 -28.53654 -26.52865 -25.28276 -24.22632 -23.60589 -22.45533 -21.68298 -21.48005 -20.52615 -18.55295 -17.52466 -16.94279 -16.85015 -16.79469 -16.36507 -16.10689 -15.40505 -15.21610 -14.87811 -14.85457 -14.36319 -14.16312 -13.95706 -13.73166 -13.58125 -13.47838 -13.36458 -13.27317 -13.00137 -12.80390 -12.77735 -12.46869 -12.31904 -12.19177 -11.92532 -11.88814 -11.48565 -11.40456 -11.37555 -11.27947 -11.20831 -10.69970 -10.40820 -10.21991 -9.96654 -9.85226 -9.80455 -9.36886 -8.96661 -8.67186 -8.65132 -8.32563 -6.14358 -4.15175 1.11686 1.67593 2.36743 2.75052 2.99648 3.22667 3.32194 3.32587 3.63379 3.72538 3.82854 4.08759 4.33226 4.34886 4.49055 4.69796 4.73908 4.79480 4.84083 4.89793 4.99193 5.06462 5.08000 5.11523 5.16361 5.18650 5.20644 5.26106 5.31131 5.41371 5.47616 5.48558 5.53879 5.59174 5.68027 5.69613 5.81434 5.81778 5.91005 5.98680 6.13796 6.24175 6.28955 6.73646 6.87049 6.91743 6.96487 7.08781 7.23128 7.59688 7.97255 8.36562 8.51524 8.88979 9.45508 10.98696 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.002452 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.387023 B =11417.033847 C =12231.697170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.007 4.007 3 C -0.197 4.197 4 C -0.236 4.236 5 C 0.592 3.408 6 O -0.545 6.545 7 N -0.602 5.602 8 C 0.119 3.881 9 C 0.044 3.956 10 N -0.540 5.540 11 C 0.060 3.940 12 C 0.021 3.979 13 H 0.104 0.896 14 C 0.253 3.747 15 N -0.470 5.470 16 C -0.005 4.005 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.877 3.123 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.264 1.264 25 C 0.036 3.964 26 C 0.085 3.915 27 C 0.070 3.930 28 C -0.075 4.075 29 O -0.174 6.174 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.025 0.975 41 H 0.032 0.968 42 H 0.265 0.735 43 H 0.041 0.959 44 H 0.096 0.904 45 H 0.114 0.886 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.542 -22.762 13.129 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.055 4.055 3 C -0.216 4.216 4 C -0.241 4.241 5 C 0.382 3.618 6 O -0.425 6.425 7 N -0.335 5.335 8 C -0.004 4.004 9 C -0.085 4.085 10 N -0.265 5.265 11 C -0.068 4.068 12 C -0.001 4.001 13 H 0.122 0.878 14 C -0.064 4.064 15 N -0.147 5.147 16 C -0.044 4.044 17 C -0.566 4.566 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.704 3.296 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.188 1.188 25 C -0.093 4.093 26 C -0.037 4.037 27 C 0.017 3.983 28 C -0.131 4.131 29 O -0.071 6.071 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.186 0.814 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.115 0.885 45 H 0.131 0.869 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.097 0.903 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.799 -21.502 14.755 26.227 hybrid contribution 0.656 -0.474 -1.774 1.950 sum 3.455 -21.975 12.981 25.756 Atomic orbital electron populations 1.20381 0.84479 1.04363 1.04015 1.22340 0.94079 0.83597 1.05489 1.22839 0.90627 0.99677 1.08469 1.21058 0.93923 0.93234 1.15856 1.17243 0.86582 0.80434 0.77560 1.90764 1.34242 1.71521 1.45943 1.47937 1.10200 1.16271 1.59094 1.21822 0.86818 0.95367 0.96376 1.22541 0.93293 0.97322 0.95360 1.61959 1.03403 1.32829 1.28294 1.22275 0.99282 0.96852 0.88429 1.18981 0.99213 0.89361 0.92528 0.87785 1.28711 0.92191 0.93340 0.92196 1.81073 1.09514 1.11384 1.12680 1.19641 0.98960 0.96787 0.89039 1.21008 1.03645 1.29877 1.02043 0.90772 1.24991 0.95495 0.94496 0.98106 1.69904 1.28403 1.31950 1.23175 0.86826 0.83275 0.77861 0.81648 1.20068 1.21287 1.18848 1.22584 0.95230 0.95396 0.96082 1.22677 0.87141 0.99342 0.94588 1.22651 0.82996 0.93800 0.98853 1.20464 0.91611 0.96606 1.04456 1.83697 1.16077 1.35668 1.71678 0.89619 0.90394 0.88950 0.81383 0.90572 0.88739 0.94240 0.89344 0.89948 0.92767 0.95624 0.94996 0.92537 0.94034 0.88548 0.86903 0.90403 0.89096 0.90319 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.40 36.00 0.37 0.00 16 2 C -0.01 -0.06 7.28 -35.74 -0.26 -0.32 16 3 C -0.20 -1.80 8.68 -37.46 -0.33 -2.13 16 4 C -0.24 -2.65 5.88 -103.28 -0.61 -3.26 16 5 C 0.59 7.54 7.51 -12.54 -0.09 7.44 16 6 O -0.55 -8.17 15.24 5.27 0.08 -8.09 16 7 N -0.60 -6.91 3.00 -173.47 -0.52 -7.43 16 8 C 0.12 1.30 6.61 -3.37 -0.02 1.28 16 9 C 0.04 0.46 5.63 -3.46 -0.02 0.44 16 10 N -0.54 -6.52 4.26 -234.03 -1.00 -7.52 16 11 C 0.06 0.79 4.35 -3.82 -0.02 0.77 16 12 C 0.02 0.35 2.12 -93.41 -0.20 0.16 16 13 H 0.10 1.63 6.31 -51.93 -0.33 1.31 16 14 C 0.25 5.01 13.62 -20.71 -0.28 4.73 16 15 N -0.47 -10.34 18.55 42.22 0.78 -9.55 16 16 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 17 C -0.53 -13.84 9.15 -34.44 -0.32 -14.16 16 18 H 0.07 2.14 7.84 -52.49 -0.41 1.72 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 21 Si 0.88 20.27 27.47 -169.99 -4.67 15.60 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 25 C 0.04 0.38 5.46 -3.70 -0.02 0.36 16 26 C 0.08 0.85 5.81 -3.61 -0.02 0.83 16 27 C 0.07 0.71 7.37 -34.97 -0.26 0.46 16 28 C -0.08 -0.59 9.78 36.00 0.35 -0.24 16 29 O -0.17 -1.72 10.52 7.65 0.08 -1.64 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.17 1.24 6.11 -52.49 -0.32 0.92 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.05 7.09 -51.93 -0.37 0.68 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.86 7.98 -51.93 -0.41 0.44 16 38 H 0.08 1.06 7.96 -51.93 -0.41 0.65 16 39 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 40 H 0.03 0.54 7.20 -51.93 -0.37 0.17 16 41 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.10 1.03 6.15 -51.93 -0.32 0.71 16 45 H 0.11 0.99 3.22 -51.93 -0.17 0.82 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.10 0.84 7.33 -51.93 -0.38 0.46 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -34.11 396.83 -7.68 -41.79 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.28 Total: -1.34 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.91 Total: -1.96 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.04 Total: -50.34 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.16 Total: -9.73 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.11 -7.68 -41.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051450848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.156 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds