Wall clock time and date at job start Tue Mar 31 2020 07:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.52819 * 2 1 4 4 C 1.53046 * 109.49850 * 239.91841 * 2 1 3 5 5 C 1.53038 * 109.53719 * 178.68257 * 4 2 1 6 6 H 1.08991 * 109.49972 * 301.41573 * 5 4 2 7 7 C 1.53009 * 109.49431 * 181.31931 * 5 4 2 8 8 C 1.53190 * 109.31222 * 61.37259 * 5 4 2 9 9 N 1.46929 * 108.77128 * 305.36076 * 8 5 4 10 10 C 1.34785 * 120.62654 * 233.60955 * 9 8 5 11 11 O 1.21277 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99403 * 180.02562 * 10 9 8 13 13 O 1.45209 * 109.46996 * 180.02562 * 12 10 9 14 14 C 1.34696 * 116.99919 * 180.02562 * 13 12 10 15 15 O 1.21469 * 120.00366 * 359.97438 * 14 13 12 16 16 C 1.47769 * 119.99923 * 179.97438 * 14 13 12 17 17 C 1.39969 * 120.02811 * 359.97438 * 16 14 13 18 18 C 1.38316 * 120.35337 * 180.02562 * 17 16 14 19 19 C 1.37768 * 120.41944 * 0.02562 * 18 17 16 20 20 C 1.40752 * 120.04763 * 0.02562 * 19 18 17 21 21 C 1.41436 * 120.17521 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99956 * 24.33346 * 21 20 19 23 23 C 1.39945 * 119.99955 * 204.33912 * 21 20 19 24 24 N 1.30827 * 119.99695 * 17.71349 * 23 21 20 25 25 Si 1.86801 * 119.99924 * 197.70916 * 23 21 20 26 26 H 1.48496 * 109.47071 * 59.99907 * 25 23 21 27 27 H 1.48496 * 109.46860 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47024 * 300.00270 * 25 23 21 29 29 C 1.39049 * 120.03276 * 179.72241 * 16 14 13 30 30 C 1.46917 * 118.74045 * 53.61042 * 9 8 5 31 31 H 1.09002 * 109.47008 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47178 * 300.07621 * 1 2 3 33 33 H 1.09003 * 109.46940 * 60.08145 * 1 2 3 34 34 H 1.08997 * 109.46267 * 298.70738 * 4 2 1 35 35 H 1.09008 * 109.45857 * 58.67829 * 4 2 1 36 36 H 1.08997 * 109.46792 * 60.00385 * 7 5 4 37 37 H 1.08997 * 109.46740 * 180.02562 * 7 5 4 38 38 H 1.08999 * 109.46663 * 299.99847 * 7 5 4 39 39 H 1.08998 * 109.59152 * 65.14531 * 8 5 4 40 40 H 1.09000 * 109.58817 * 185.57647 * 8 5 4 41 41 H 1.09011 * 109.47257 * 299.99377 * 12 10 9 42 42 H 1.08998 * 109.47677 * 60.00098 * 12 10 9 43 43 H 1.08000 * 119.82576 * 359.97438 * 17 16 14 44 44 H 1.07997 * 119.79206 * 180.02562 * 18 17 16 45 45 H 1.07990 * 119.97346 * 179.97438 * 19 18 17 46 46 H 0.97001 * 119.99290 * 180.02562 * 24 23 21 47 47 H 1.07999 * 120.20349 * 359.97438 * 29 16 14 48 48 H 1.09003 * 109.58692 * 186.60022 * 30 9 8 49 49 H 1.09008 * 109.58634 * 66.17948 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0409 -0.7231 -1.2484 5 6 3.5709 -0.6950 -1.2660 6 1 3.9159 0.3388 -1.2541 7 6 4.0798 -1.3894 -2.5309 8 6 4.1053 -1.4268 -0.0309 9 7 3.5046 -0.8292 1.1695 10 6 4.2812 -0.3862 2.1781 11 8 5.4879 -0.4784 2.0998 12 6 3.6499 0.2238 3.4030 13 8 4.6891 0.6201 4.3367 14 6 4.2898 1.1859 5.4919 15 8 3.1060 1.3445 5.7133 16 6 5.2918 1.6138 6.4901 17 6 6.6560 1.4309 6.2359 18 6 7.5997 1.8284 7.1658 19 6 7.2084 2.4082 8.3526 20 6 5.8411 2.5994 8.6265 21 6 5.4364 3.1940 9.8444 22 1 6.1134 3.8434 10.3794 23 6 4.1587 2.9406 10.3560 24 7 3.4725 1.9142 9.9233 25 14 3.4332 4.0679 11.6569 26 1 3.3365 5.4481 11.1178 27 1 2.0792 3.5857 12.0302 28 1 4.3074 4.0655 12.8573 29 6 4.8807 2.2033 7.6805 30 6 2.0414 -0.7239 1.2495 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5150 0.8893 33 1 -0.3633 0.5126 -0.8907 34 1 1.6967 -1.7573 -1.2354 35 1 1.6584 -0.2243 -2.1390 36 1 3.6970 -0.8701 -3.4094 37 1 5.1695 -1.3695 -2.5428 38 1 3.7354 -2.4235 -2.5412 39 1 3.8375 -2.4819 -0.0868 40 1 5.1896 -1.3247 0.0137 41 1 3.0683 1.0995 3.1143 42 1 2.9950 -0.5074 3.8767 43 1 6.9735 0.9761 5.3092 44 1 8.6500 1.6833 6.9601 45 1 7.9513 2.7155 9.0737 46 1 2.5868 1.7389 10.2778 47 1 3.8294 2.3506 7.8790 48 1 1.7638 -0.1581 2.1389 49 1 1.6053 -1.7218 1.2979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051535249.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:46 Heat of formation + Delta-G solvation = -118.649960 kcal Electronic energy + Delta-G solvation = -29699.297003 eV Core-core repulsion = 25590.323902 eV Total energy + Delta-G solvation = -4108.973101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.66520 -39.70082 -38.08834 -37.30639 -35.70204 -34.27255 -33.82038 -33.74818 -30.54807 -29.52996 -29.09742 -27.13817 -26.90794 -25.56588 -25.23234 -23.05414 -21.24966 -20.99774 -20.76351 -19.88069 -19.38812 -18.01255 -17.04298 -16.83972 -16.42257 -16.04922 -15.72956 -15.44613 -15.21485 -14.95039 -14.88132 -14.60755 -13.96328 -13.63390 -13.47926 -13.37336 -13.23763 -12.99414 -12.84296 -12.63968 -12.55453 -12.45751 -12.35726 -12.07920 -11.97765 -11.68335 -11.27927 -11.22779 -11.19263 -11.11814 -10.96903 -10.76715 -10.72960 -10.54228 -10.44025 -10.25342 -9.88001 -9.71284 -9.51714 -9.23921 -8.91092 -7.74940 -7.55160 -6.83123 -4.43689 1.94407 2.35697 2.44225 2.78965 3.05770 3.07507 3.14723 3.35379 3.55722 3.89760 4.15480 4.25410 4.36228 4.48254 4.50980 4.57349 4.83622 4.90893 5.03271 5.05464 5.09790 5.13363 5.20363 5.25518 5.26601 5.35516 5.45198 5.50724 5.54245 5.58772 5.59765 5.69194 5.76524 5.78540 5.84128 6.02335 6.14071 6.21780 6.46082 6.59040 6.84883 6.93575 6.97156 7.07647 7.16774 7.31068 7.68926 7.75935 7.90618 7.98508 8.09985 8.43372 8.47562 8.76639 8.78753 10.12400 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.002187 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.010226 B =12800.657109 C =14102.575073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 H 0.077 0.923 4 C -0.109 4.109 5 C -0.109 4.109 6 H 0.075 0.925 7 C -0.144 4.144 8 C 0.118 3.882 9 N -0.614 5.614 10 C 0.520 3.480 11 O -0.512 6.512 12 C 0.049 3.951 13 O -0.332 6.332 14 C 0.514 3.486 15 O -0.518 6.518 16 C -0.115 4.115 17 C -0.189 4.189 18 C -0.104 4.104 19 C -0.199 4.199 20 C 0.095 3.905 21 C -0.461 4.461 22 H 0.082 0.918 23 C 0.073 3.927 24 N -0.788 5.788 25 Si 0.912 3.088 26 H -0.263 1.263 27 H -0.278 1.278 28 H -0.265 1.265 29 C -0.088 4.088 30 C 0.106 3.894 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.285 0.715 47 H 0.136 0.864 48 H 0.087 0.913 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 -6.084 -20.591 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 H 0.095 0.905 4 C -0.146 4.146 5 C -0.128 4.128 6 H 0.094 0.906 7 C -0.202 4.202 8 C -0.004 4.004 9 N -0.350 5.350 10 C 0.307 3.693 11 O -0.386 6.386 12 C -0.029 4.029 13 O -0.248 6.248 14 C 0.361 3.639 15 O -0.408 6.408 16 C -0.116 4.116 17 C -0.209 4.209 18 C -0.123 4.123 19 C -0.219 4.219 20 C 0.092 3.908 21 C -0.490 4.490 22 H 0.100 0.900 23 C -0.146 4.146 24 N -0.413 5.413 25 Si 0.736 3.264 26 H -0.187 1.187 27 H -0.203 1.203 28 H -0.189 1.189 29 C -0.108 4.108 30 C -0.017 4.017 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.096 0.904 47 H 0.154 0.846 48 H 0.106 0.894 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.629 -6.239 -20.512 22.441 hybrid contribution -0.722 0.338 0.523 0.953 sum -7.351 -5.901 -19.989 22.100 Atomic orbital electron populations 1.21777 0.94031 1.02222 1.02388 1.21533 0.96193 1.00313 0.94817 0.90469 1.21665 0.94636 1.00864 0.97469 1.21529 0.95828 1.00708 0.94722 0.90627 1.21754 1.01400 1.00516 0.96559 1.21672 0.99889 0.96239 0.82617 1.47986 1.06789 1.62003 1.18222 1.20188 0.87226 0.78142 0.83714 1.90741 1.13881 1.54492 1.79479 1.22555 0.90429 1.01189 0.88753 1.86696 1.37484 1.72491 1.28140 1.22009 0.88793 0.73361 0.79700 1.90759 1.18925 1.53494 1.77612 1.18778 0.91405 1.07485 0.93943 1.20655 0.91519 1.08316 1.00424 1.20532 0.97318 0.99838 0.94566 1.21204 0.95866 1.06961 0.97859 1.17531 0.90522 0.90290 0.92446 1.19527 0.98705 1.25700 1.05022 0.89972 1.25965 0.96716 0.94358 0.97521 1.69776 1.11845 1.22057 1.37599 0.86306 0.78376 0.81157 0.80576 1.18713 1.20256 1.18933 1.21647 1.01211 0.98116 0.89806 1.21929 0.79289 1.01384 0.99050 0.92352 0.92083 0.92191 0.91602 0.91492 0.92272 0.92244 0.92446 0.91383 0.88751 0.88563 0.88494 0.87518 0.88424 0.88290 0.90400 0.84645 0.89438 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.20 37.16 0.34 -0.45 16 2 C -0.11 -0.73 2.87 -90.50 -0.26 -0.99 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -0.66 4.45 -26.69 -0.12 -0.78 16 5 C -0.11 -0.78 2.87 -90.50 -0.26 -1.04 16 6 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 7 C -0.14 -0.83 9.20 37.16 0.34 -0.49 16 8 C 0.12 1.09 5.72 -3.71 -0.02 1.07 16 9 N -0.61 -6.60 2.97 -172.77 -0.51 -7.12 16 10 C 0.52 7.67 7.78 -10.98 -0.09 7.59 16 11 O -0.51 -9.58 15.91 -14.10 -0.22 -9.80 16 12 C 0.05 0.74 4.30 36.01 0.15 0.89 16 13 O -0.33 -6.70 8.99 -47.16 -0.42 -7.13 16 14 C 0.51 11.71 7.90 34.63 0.27 11.98 16 15 O -0.52 -12.32 16.12 -19.24 -0.31 -12.63 16 16 C -0.11 -2.83 5.87 -105.05 -0.62 -3.44 16 17 C -0.19 -4.37 9.62 -38.90 -0.37 -4.75 16 18 C -0.10 -2.33 10.01 -39.72 -0.40 -2.72 16 19 C -0.20 -4.76 9.78 -38.80 -0.38 -5.14 16 20 C 0.09 2.50 5.57 -106.87 -0.60 1.90 16 21 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 22 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 23 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 24 N -0.79 -20.58 10.96 55.55 0.61 -19.97 16 25 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 26 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 27 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 28 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 29 C -0.09 -2.35 8.24 -38.42 -0.32 -2.67 16 30 C 0.11 0.84 5.62 -3.72 -0.02 0.82 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.05 7.00 -51.93 -0.36 0.69 16 41 H 0.10 1.29 7.69 -51.92 -0.40 0.89 16 42 H 0.10 1.32 7.94 -51.93 -0.41 0.91 16 43 H 0.11 2.32 7.59 -52.49 -0.40 1.93 16 44 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 45 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 46 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 47 H 0.14 3.81 5.75 -52.49 -0.30 3.51 16 48 H 0.09 0.69 5.93 -51.93 -0.31 0.38 16 49 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -31.12 400.98 -10.27 -41.39 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.65 Total: 4.51 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -2.76 Total: -8.81 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.10 Total: -27.08 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.96 Total: -29.56 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.12 -10.27 -41.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535249.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.260 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds