Wall clock time and date at job start Tue Mar 31 2020 07:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50140 * 2 1 4 4 C 1.53043 * 109.49526 * 120.06829 * 2 1 3 5 5 C 1.53040 * 109.53677 * 58.58513 * 4 2 1 6 6 H 1.09002 * 109.52506 * 301.39519 * 5 4 2 7 7 C 1.53003 * 109.49666 * 181.31732 * 5 4 2 8 8 C 1.53188 * 109.31718 * 61.36667 * 5 4 2 9 9 N 1.46926 * 108.77321 * 305.36399 * 8 5 4 10 10 C 1.34777 * 120.63196 * 233.58148 * 9 8 5 11 11 O 1.21275 * 119.99772 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00053 * 180.02562 * 10 9 8 13 13 O 1.45202 * 109.47144 * 180.02562 * 12 10 9 14 14 C 1.34699 * 116.99918 * 179.97438 * 13 12 10 15 15 O 1.21465 * 120.00379 * 359.97438 * 14 13 12 16 16 C 1.47767 * 119.99748 * 180.02562 * 14 13 12 17 17 C 1.39969 * 120.03453 * 359.97438 * 16 14 13 18 18 C 1.38317 * 120.35763 * 179.97438 * 17 16 14 19 19 C 1.37759 * 120.41619 * 0.02562 * 18 17 16 20 20 C 1.40752 * 120.05069 * 0.02562 * 19 18 17 21 21 C 1.41441 * 120.17580 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99564 * 335.60843 * 21 20 19 23 23 C 1.39934 * 120.00235 * 155.33737 * 21 20 19 24 24 N 1.30829 * 119.99739 * 342.68775 * 23 21 20 25 25 Si 1.86804 * 120.00137 * 162.69116 * 23 21 20 26 26 H 1.48502 * 109.46972 * 59.99711 * 25 23 21 27 27 H 1.48498 * 109.46890 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46976 * 300.00026 * 25 23 21 29 29 C 1.39056 * 120.03113 * 180.30035 * 16 14 13 30 30 C 1.46933 * 118.74017 * 53.85853 * 9 8 5 31 31 H 1.09000 * 109.47292 * 299.93487 * 1 2 3 32 32 H 1.09006 * 109.46740 * 59.93285 * 1 2 3 33 33 H 1.09005 * 109.47485 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46109 * 298.56638 * 4 2 1 35 35 H 1.08996 * 109.44896 * 178.59927 * 4 2 1 36 36 H 1.09004 * 109.46854 * 300.16181 * 7 5 4 37 37 H 1.08997 * 109.47140 * 60.15959 * 7 5 4 38 38 H 1.08999 * 109.47538 * 180.16107 * 7 5 4 39 39 H 1.08998 * 109.59316 * 185.57575 * 8 5 4 40 40 H 1.09004 * 109.58447 * 65.14738 * 8 5 4 41 41 H 1.08993 * 109.47468 * 59.99897 * 12 10 9 42 42 H 1.09007 * 109.46761 * 299.99857 * 12 10 9 43 43 H 1.08004 * 119.81682 * 0.03398 * 17 16 14 44 44 H 1.07994 * 119.78801 * 180.02562 * 18 17 16 45 45 H 1.08002 * 119.97168 * 180.02562 * 19 18 17 46 46 H 0.97004 * 119.99395 * 180.02562 * 24 23 21 47 47 H 1.08004 * 120.20592 * 359.97438 * 29 16 14 48 48 H 1.09005 * 109.58434 * 65.92586 * 30 9 8 49 49 H 1.08996 * 109.58489 * 186.35213 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7228 1.2485 5 6 1.5029 -2.1555 1.2665 6 1 0.4131 -2.1356 1.2549 7 6 1.9872 -2.8670 2.5315 8 6 2.0138 -2.9041 0.0315 9 7 1.6514 -2.1385 -1.1690 10 6 0.9747 -2.7226 -2.1777 11 8 0.6595 -3.8911 -2.0997 12 6 0.6108 -1.9241 -3.4028 13 8 -0.1095 -2.7714 -4.3365 14 6 -0.5102 -2.2059 -5.4915 15 8 -0.2651 -1.0370 -5.7126 16 6 -1.2489 -3.0074 -6.4891 17 6 -1.5322 -4.3544 -6.2349 18 6 -2.2237 -5.1107 -7.1638 19 6 -2.6412 -4.5478 -8.3499 20 6 -2.3648 -3.1952 -8.6239 21 6 -2.7917 -2.6147 -9.8410 22 1 -2.9639 -3.2385 -10.7056 23 6 -2.9964 -1.2328 -9.9232 24 7 -3.1278 -0.5249 -8.8309 25 14 -3.0820 -0.3990 -11.5927 26 1 -4.2038 -0.9752 -12.3768 27 1 -3.3048 1.0575 -11.4076 28 1 -1.8062 -0.6167 -12.3207 29 6 -1.6575 -2.4261 -7.6844 30 6 2.0462 -0.7256 -1.2518 31 1 -0.3634 0.5128 0.8906 32 1 -0.3633 0.5149 -0.8895 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6987 -0.1954 2.1390 35 1 3.1304 -0.7442 1.2353 36 1 3.0770 -2.8855 2.5433 37 1 1.6234 -2.3340 3.4099 38 1 1.6063 -3.8882 2.5425 39 1 1.5553 -3.8919 -0.0128 40 1 3.0978 -3.0043 0.0876 41 1 1.5188 -1.5510 -3.8763 42 1 -0.0203 -1.0834 -3.1143 43 1 -1.2098 -4.8053 -5.3079 44 1 -2.4377 -6.1490 -6.9580 45 1 -3.1810 -5.1449 -9.0699 46 1 -3.2701 0.4330 -8.8880 47 1 -1.4370 -1.3884 -7.8872 48 1 3.1327 -0.6519 -1.2983 49 1 1.6089 -0.2757 -2.1431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051535252.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:54 Heat of formation + Delta-G solvation = -114.824179 kcal Electronic energy + Delta-G solvation = -29984.752364 eV Core-core repulsion = 25875.945162 eV Total energy + Delta-G solvation = -4108.807203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.75993 -39.73046 -38.13189 -37.30723 -35.69853 -34.23947 -33.74704 -33.38210 -30.54491 -29.52848 -29.08558 -27.33272 -26.87025 -25.56031 -25.22641 -23.05302 -22.02103 -20.99219 -20.35179 -19.88149 -18.84900 -18.02443 -17.09221 -16.73999 -16.45411 -16.02403 -15.74666 -15.40514 -15.18537 -14.90135 -14.62742 -14.46923 -14.43933 -13.83001 -13.67860 -13.40997 -13.25354 -13.02553 -12.70089 -12.62005 -12.42587 -12.35059 -12.12528 -12.03945 -11.92050 -11.68207 -11.45348 -11.19733 -11.17953 -11.11806 -10.93635 -10.76559 -10.54996 -10.53973 -10.43509 -10.25185 -9.87442 -9.71264 -9.51527 -9.24138 -8.88218 -7.74931 -7.54919 -6.82779 -4.43762 1.94446 2.36999 2.45298 2.79024 3.05817 3.07578 3.14683 3.36451 3.55808 3.89848 4.16938 4.27855 4.40428 4.48799 4.54767 4.57525 4.76299 4.96248 5.05754 5.07797 5.10316 5.17345 5.21975 5.24980 5.32371 5.36675 5.49143 5.54208 5.55411 5.60072 5.65682 5.70532 5.76424 5.84750 5.87269 6.08275 6.14266 6.24271 6.45983 6.59093 6.85005 6.93614 6.97149 7.08788 7.16929 7.31094 7.68925 7.75887 7.90666 7.99681 8.10043 8.43473 8.47703 8.76730 8.78809 10.12673 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.002221 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.308294 B =12601.363175 C =13649.393558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.109 4.109 5 C -0.111 4.111 6 H 0.080 0.920 7 C -0.145 4.145 8 C 0.119 3.881 9 N -0.611 5.611 10 C 0.520 3.480 11 O -0.513 6.513 12 C 0.048 3.952 13 O -0.332 6.332 14 C 0.514 3.486 15 O -0.518 6.518 16 C -0.115 4.115 17 C -0.189 4.189 18 C -0.104 4.104 19 C -0.199 4.199 20 C 0.094 3.906 21 C -0.461 4.461 22 H 0.082 0.918 23 C 0.073 3.927 24 N -0.789 5.789 25 Si 0.912 3.088 26 H -0.265 1.265 27 H -0.278 1.278 28 H -0.263 1.263 29 C -0.088 4.088 30 C 0.105 3.895 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.285 0.715 47 H 0.136 0.864 48 H 0.074 0.926 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.557 2.955 19.054 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.127 4.127 3 H 0.103 0.897 4 C -0.146 4.146 5 C -0.130 4.130 6 H 0.098 0.902 7 C -0.203 4.203 8 C -0.003 4.003 9 N -0.347 5.347 10 C 0.308 3.692 11 O -0.387 6.387 12 C -0.029 4.029 13 O -0.248 6.248 14 C 0.361 3.639 15 O -0.408 6.408 16 C -0.116 4.116 17 C -0.209 4.209 18 C -0.123 4.123 19 C -0.219 4.219 20 C 0.092 3.908 21 C -0.490 4.490 22 H 0.100 0.900 23 C -0.146 4.146 24 N -0.413 5.413 25 Si 0.736 3.264 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.187 1.187 29 C -0.107 4.107 30 C -0.018 4.018 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.096 0.904 47 H 0.154 0.846 48 H 0.093 0.907 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.402 2.907 19.112 21.953 hybrid contribution -0.013 0.795 -0.550 0.967 sum 10.388 3.703 18.562 21.591 Atomic orbital electron populations 1.21900 0.94562 1.02472 1.02018 1.21584 0.96823 0.99515 0.94741 0.89731 1.21616 1.00490 0.95029 0.97505 1.21574 1.01553 0.95232 0.94628 0.90211 1.21761 1.01290 1.00570 0.96647 1.21661 0.99857 0.96187 0.82643 1.47946 1.56982 1.11701 1.18118 1.20167 0.77692 0.87676 0.83712 1.90741 1.52205 1.16221 1.79504 1.22558 0.98460 0.93148 0.88774 1.86695 1.67536 1.42394 1.28183 1.22006 0.75921 0.86124 0.79817 1.90758 1.54643 1.17657 1.77728 1.18781 1.04665 0.94012 0.94172 1.20657 1.06765 0.93086 1.00372 1.20530 0.99192 0.97895 0.94657 1.21207 1.06320 0.96749 0.97590 1.17532 0.89547 0.90983 0.92733 1.19527 1.40136 0.92152 0.97147 0.89981 1.25961 0.92372 0.97768 0.98460 1.69775 1.33207 1.08814 1.29539 0.86303 0.79953 0.78106 0.82032 1.18939 1.20260 1.18714 1.21650 0.96542 1.00954 0.91593 1.21998 1.00258 0.80384 0.99113 0.92418 0.92407 0.92118 0.91517 0.91670 0.92504 0.92312 0.92294 0.88801 0.91433 0.88590 0.88549 0.87520 0.88426 0.88292 0.90411 0.84634 0.90747 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.71 37.16 0.32 -0.88 16 2 C -0.11 -0.70 3.21 -90.27 -0.29 -0.99 16 3 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.11 -0.65 4.71 -26.69 -0.13 -0.77 16 5 C -0.11 -0.79 2.53 -90.50 -0.23 -1.02 16 6 H 0.08 0.68 6.34 -51.93 -0.33 0.35 16 7 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 8 C 0.12 1.08 5.71 -3.71 -0.02 1.06 16 9 N -0.61 -6.43 2.40 -172.50 -0.41 -6.84 16 10 C 0.52 7.59 7.78 -10.99 -0.09 7.51 16 11 O -0.51 -9.52 15.91 -14.10 -0.22 -9.75 16 12 C 0.05 0.74 4.30 36.01 0.15 0.89 16 13 O -0.33 -6.69 8.99 -47.17 -0.42 -7.11 16 14 C 0.51 11.69 7.90 34.63 0.27 11.96 16 15 O -0.52 -12.30 16.12 -19.24 -0.31 -12.61 16 16 C -0.11 -2.83 5.87 -105.05 -0.62 -3.45 16 17 C -0.19 -4.36 9.62 -38.90 -0.37 -4.73 16 18 C -0.10 -2.33 10.01 -39.73 -0.40 -2.73 16 19 C -0.20 -4.76 9.78 -38.81 -0.38 -5.14 16 20 C 0.09 2.49 5.57 -106.87 -0.60 1.90 16 21 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 22 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 23 C 0.07 1.82 5.15 -17.34 -0.09 1.73 16 24 N -0.79 -20.58 10.95 55.55 0.61 -19.98 16 25 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 26 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 28 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 29 C -0.09 -2.34 8.24 -38.42 -0.32 -2.66 16 30 C 0.11 0.81 5.78 -3.48 -0.02 0.79 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.58 5.97 -51.93 -0.31 0.27 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 1.04 7.01 -51.93 -0.36 0.67 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 1.28 7.93 -51.93 -0.41 0.87 16 42 H 0.10 1.32 7.70 -51.92 -0.40 0.92 16 43 H 0.11 2.32 7.59 -52.48 -0.40 1.92 16 44 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 45 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 46 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 47 H 0.14 3.81 5.75 -52.48 -0.30 3.51 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.09 0.68 5.93 -51.93 -0.31 0.37 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -31.06 396.35 -10.05 -41.11 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.45 Total: 5.03 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.79 Total: -9.34 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.19 Total: -26.82 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.96 Total: -29.47 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.06 -10.05 -41.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535252.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.711 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds