Wall clock time and date at job start Tue Mar 31 2020 07:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.49727 * 2 1 4 4 C 1.53034 * 109.49786 * 239.93780 * 2 1 3 5 5 C 1.53045 * 109.54273 * 178.64874 * 4 2 1 6 6 H 1.08991 * 109.50106 * 181.31385 * 5 4 2 7 7 C 1.53006 * 109.52160 * 301.39817 * 5 4 2 8 8 C 1.53195 * 109.30804 * 61.36170 * 5 4 2 9 9 N 1.46925 * 108.77907 * 305.36385 * 8 5 4 10 10 C 1.34771 * 120.63434 * 233.58780 * 9 8 5 11 11 O 1.21275 * 120.00351 * 0.02562 * 10 9 8 12 12 C 1.50710 * 119.99871 * 179.97438 * 10 9 8 13 13 O 1.45192 * 109.46890 * 180.02562 * 12 10 9 14 14 C 1.34706 * 117.00075 * 180.02562 * 13 12 10 15 15 O 1.21468 * 119.99674 * 359.97438 * 14 13 12 16 16 C 1.47768 * 120.00434 * 180.02562 * 14 13 12 17 17 C 1.39971 * 120.02954 * 359.97438 * 16 14 13 18 18 C 1.38308 * 120.35560 * 180.02562 * 17 16 14 19 19 C 1.37757 * 120.41779 * 359.76192 * 18 17 16 20 20 C 1.40756 * 120.04779 * 0.51685 * 19 18 17 21 21 C 1.41442 * 120.17521 * 179.73429 * 20 19 18 22 22 H 1.07995 * 120.00091 * 154.45086 * 21 20 19 23 23 C 1.39946 * 119.99963 * 334.46174 * 21 20 19 24 24 N 1.30824 * 119.99813 * 334.65088 * 23 21 20 25 25 Si 1.86804 * 119.99731 * 154.65306 * 23 21 20 26 26 H 1.48501 * 109.46764 * 179.97438 * 25 23 21 27 27 H 1.48496 * 109.47324 * 299.99663 * 25 23 21 28 28 H 1.48499 * 109.46988 * 59.99723 * 25 23 21 29 29 C 1.39046 * 120.03371 * 179.97438 * 16 14 13 30 30 C 1.46929 * 118.73209 * 53.86528 * 9 8 5 31 31 H 1.09005 * 109.46946 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47080 * 300.06157 * 1 2 3 33 33 H 1.08998 * 109.47491 * 60.06339 * 1 2 3 34 34 H 1.08998 * 109.46293 * 58.62714 * 4 2 1 35 35 H 1.09009 * 109.45964 * 298.66661 * 4 2 1 36 36 H 1.08994 * 109.47064 * 179.84995 * 7 5 4 37 37 H 1.09002 * 109.46635 * 299.85049 * 7 5 4 38 38 H 1.08998 * 109.46853 * 59.84943 * 7 5 4 39 39 H 1.09004 * 109.58199 * 185.58571 * 8 5 4 40 40 H 1.08995 * 109.58697 * 65.15722 * 8 5 4 41 41 H 1.09000 * 109.46920 * 60.00461 * 12 10 9 42 42 H 1.08999 * 109.47211 * 300.00167 * 12 10 9 43 43 H 1.08004 * 119.82108 * 0.02562 * 17 16 14 44 44 H 1.07998 * 119.79121 * 180.02562 * 18 17 16 45 45 H 1.08005 * 119.97901 * 180.25864 * 19 18 17 46 46 H 0.96996 * 120.00077 * 354.20168 * 24 23 21 47 47 H 1.08002 * 120.20172 * 359.95997 * 29 16 14 48 48 H 1.08992 * 109.58892 * 65.92629 * 30 9 8 49 49 H 1.09000 * 109.58433 * 186.35305 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7226 -1.2485 5 6 3.5708 -0.6939 -1.2667 6 1 3.9333 -1.1883 -2.1679 7 6 4.0551 0.7574 -1.2504 8 6 4.1059 -1.4254 -0.0317 9 7 3.5054 -0.8282 1.1689 10 6 4.2820 -0.3853 2.1774 11 8 5.4887 -0.4772 2.0990 12 6 3.6508 0.2254 3.4022 13 8 4.6899 0.6214 4.3357 14 6 4.2908 1.1878 5.4909 15 8 3.1071 1.3470 5.7120 16 6 5.2929 1.6165 6.4886 17 6 6.6572 1.4338 6.2343 18 6 7.6009 1.8321 7.1637 19 6 7.2099 2.4174 8.3478 20 6 5.8424 2.6040 8.6240 21 6 5.4378 3.1996 9.8414 22 1 4.4901 3.7138 9.9022 23 6 6.2656 3.1227 10.9671 24 7 7.1243 2.1424 11.0818 25 14 6.1445 4.4198 12.3059 26 1 7.1208 4.1131 13.3821 27 1 6.4452 5.7552 11.7301 28 1 4.7709 4.4221 12.8701 29 6 4.8817 2.2017 7.6810 30 6 2.0418 -0.7288 1.2518 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3634 0.5128 -0.8905 34 1 1.6576 -0.2242 -2.1389 35 1 1.6972 -1.7571 -1.2355 36 1 5.1449 0.7769 -1.2607 37 1 3.6741 1.2774 -2.1293 38 1 3.6914 1.2517 -0.3496 39 1 5.1902 -1.3227 0.0126 40 1 3.8387 -2.4806 -0.0877 41 1 2.9955 -0.5054 3.8760 42 1 3.0696 1.1011 3.1131 43 1 6.9746 0.9794 5.3074 44 1 8.6511 1.6871 6.9578 45 1 7.9531 2.7295 9.0667 46 1 7.1298 1.4238 10.4304 47 1 3.8301 2.3454 7.8814 48 1 1.6097 -1.7283 1.2983 49 1 1.7637 -0.1663 2.1431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051535254.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:59 Heat of formation + Delta-G solvation = -120.796264 kcal Electronic energy + Delta-G solvation = -29760.051431 eV Core-core repulsion = 25650.985260 eV Total energy + Delta-G solvation = -4109.066172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.84297 -39.90550 -38.22222 -37.55815 -35.90793 -34.07100 -33.97894 -33.73931 -30.24899 -29.93533 -28.99070 -27.13995 -27.12506 -25.59060 -25.16633 -23.25464 -21.98993 -21.06401 -20.42607 -20.13357 -18.95079 -18.46255 -17.29258 -16.95774 -16.57345 -16.29396 -15.68497 -15.46450 -15.28096 -14.79008 -14.52566 -14.48738 -14.22182 -14.10144 -13.79911 -13.76878 -13.28246 -13.17032 -12.79403 -12.62811 -12.50067 -12.46822 -12.26609 -11.99996 -11.98368 -11.95835 -11.45721 -11.33318 -11.27976 -11.03198 -10.90066 -10.70578 -10.70030 -10.60478 -10.45808 -10.39653 -9.94121 -9.75255 -9.57554 -9.09127 -8.94820 -7.94374 -7.79068 -7.26924 -4.54325 1.73864 2.26791 2.37130 2.66857 3.12772 3.17058 3.22944 3.33621 3.42713 3.97949 4.10170 4.19992 4.31397 4.43487 4.48606 4.52041 4.73601 4.84320 4.94901 4.96647 4.98475 5.08308 5.22761 5.23868 5.30009 5.32572 5.33668 5.39935 5.42298 5.52486 5.57551 5.65906 5.72041 5.78076 5.83854 6.00860 6.02756 6.17547 6.29040 6.48498 6.67023 6.74577 6.80294 7.01406 7.08733 7.48061 7.55689 7.60642 7.72879 7.91692 8.00780 8.08780 8.26344 8.57350 8.74784 9.97989 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.001975 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.178050 B =14174.936156 C =14875.682773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 H 0.081 0.919 4 C -0.109 4.109 5 C -0.107 4.107 6 H 0.083 0.917 7 C -0.147 4.147 8 C 0.117 3.883 9 N -0.611 5.611 10 C 0.520 3.480 11 O -0.511 6.511 12 C 0.048 3.952 13 O -0.329 6.329 14 C 0.515 3.485 15 O -0.522 6.522 16 C -0.095 4.095 17 C -0.195 4.195 18 C -0.096 4.096 19 C -0.190 4.190 20 C 0.082 3.918 21 C -0.519 4.519 22 H 0.079 0.921 23 C 0.038 3.962 24 N -0.795 5.795 25 Si 1.067 2.933 26 H -0.273 1.273 27 H -0.274 1.274 28 H -0.275 1.275 29 C -0.153 4.153 30 C 0.107 3.893 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.299 0.701 47 H 0.111 0.889 48 H 0.075 0.925 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -5.879 -21.799 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 H 0.099 0.901 4 C -0.147 4.147 5 C -0.126 4.126 6 H 0.101 0.899 7 C -0.204 4.204 8 C -0.005 4.005 9 N -0.347 5.347 10 C 0.307 3.693 11 O -0.385 6.385 12 C -0.030 4.030 13 O -0.245 6.245 14 C 0.362 3.638 15 O -0.413 6.413 16 C -0.096 4.096 17 C -0.214 4.214 18 C -0.114 4.114 19 C -0.210 4.210 20 C 0.079 3.921 21 C -0.547 4.547 22 H 0.097 0.903 23 C -0.183 4.183 24 N -0.418 5.418 25 Si 0.890 3.110 26 H -0.198 1.198 27 H -0.199 1.199 28 H -0.201 1.201 29 C -0.172 4.172 30 C -0.016 4.016 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.130 0.870 46 H 0.113 0.887 47 H 0.129 0.871 48 H 0.093 0.907 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.100 -5.453 -20.328 22.930 hybrid contribution -1.016 -0.614 -1.638 2.023 sum -10.116 -6.067 -21.966 24.932 Atomic orbital electron populations 1.21784 0.94157 1.02187 1.02343 1.21654 0.96047 1.00575 0.94749 0.90071 1.21618 0.94695 1.00741 0.97596 1.21516 0.95862 0.97305 0.97960 0.89906 1.21844 1.01318 0.95441 1.01827 1.21662 0.99954 0.96036 0.82859 1.47937 1.06720 1.61916 1.18111 1.20128 0.87250 0.78281 0.83677 1.90749 1.13840 1.54473 1.79421 1.22586 0.90333 1.01222 0.88820 1.86696 1.37558 1.72219 1.28039 1.22003 0.88654 0.73221 0.79883 1.90746 1.18988 1.53683 1.77842 1.18663 0.91567 1.06061 0.93357 1.20658 0.91383 1.08880 1.00500 1.20628 0.97601 0.98936 0.94278 1.21426 0.96025 1.05764 0.97750 1.17590 0.91000 0.90447 0.93017 1.20550 1.06824 1.32051 0.95254 0.90290 1.27059 0.91297 0.99292 1.00690 1.70472 1.29474 1.06373 1.35475 0.83613 0.77501 0.75016 0.74886 1.19815 1.19903 1.20051 1.21171 0.98903 1.03323 0.93839 1.22014 0.79274 1.01347 0.98995 0.92390 0.92163 0.92198 0.91488 0.91643 0.92489 0.92685 0.92361 0.88682 0.91365 0.88483 0.88525 0.87250 0.88134 0.87019 0.88741 0.87113 0.90725 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.20 37.16 0.34 -0.37 16 2 C -0.11 -0.67 2.54 -90.28 -0.23 -0.90 16 3 H 0.08 0.57 6.34 -51.93 -0.33 0.24 16 4 C -0.11 -0.59 4.71 -26.69 -0.13 -0.72 16 5 C -0.11 -0.71 3.21 -90.49 -0.29 -1.00 16 6 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 7 C -0.15 -1.16 8.71 37.16 0.32 -0.83 16 8 C 0.12 1.00 5.82 -3.71 -0.02 0.98 16 9 N -0.61 -6.02 2.41 -172.50 -0.42 -6.44 16 10 C 0.52 7.19 7.78 -10.98 -0.09 7.11 16 11 O -0.51 -9.15 15.91 -14.10 -0.22 -9.37 16 12 C 0.05 0.68 4.30 36.01 0.15 0.84 16 13 O -0.33 -6.28 8.99 -47.19 -0.42 -6.71 16 14 C 0.51 10.97 7.90 34.63 0.27 11.24 16 15 O -0.52 -11.45 16.12 -19.24 -0.31 -11.76 16 16 C -0.10 -2.23 5.87 -105.05 -0.62 -2.84 16 17 C -0.19 -4.39 9.62 -38.91 -0.37 -4.77 16 18 C -0.10 -2.18 10.01 -39.73 -0.40 -2.57 16 19 C -0.19 -4.73 7.94 -38.81 -0.31 -5.04 16 20 C 0.08 2.15 5.29 -106.87 -0.57 1.58 16 21 C -0.52 -13.56 8.98 -37.72 -0.34 -13.90 16 22 H 0.08 2.01 7.96 -52.49 -0.42 1.59 16 23 C 0.04 0.96 4.94 -17.34 -0.09 0.87 16 24 N -0.79 -20.67 12.31 55.55 0.68 -19.99 16 25 Si 1.07 21.14 30.00 -169.99 -5.10 16.04 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 28 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 29 C -0.15 -3.82 9.34 -38.43 -0.36 -4.18 16 30 C 0.11 0.76 5.66 -3.48 -0.02 0.74 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.54 5.97 -51.93 -0.31 0.23 16 39 H 0.09 1.00 7.01 -51.93 -0.36 0.64 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 1.21 7.93 -51.93 -0.41 0.80 16 42 H 0.10 1.20 7.70 -51.93 -0.40 0.80 16 43 H 0.11 2.33 7.59 -52.48 -0.40 1.93 16 44 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 45 H 0.11 2.82 6.48 -52.48 -0.34 2.48 16 46 H 0.30 7.96 6.68 -40.82 -0.27 7.69 16 47 H 0.11 2.75 7.64 -52.49 -0.40 2.35 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.60 5.93 -51.93 -0.31 0.29 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -30.58 395.58 -9.95 -40.53 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.40 Total: 5.51 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -2.72 Total: -13.78 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.27 Total: -26.43 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.96 Total: -27.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.10 Total: 16.04 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.58 -9.95 -40.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535254.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.267 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds