Wall clock time and date at job start Tue Mar 31 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47221 * 2 1 4 4 C 1.46495 * 119.99615 * 270.00075 * 3 2 1 5 5 C 1.53001 * 109.46833 * 269.99457 * 4 3 2 6 6 H 1.08994 * 109.47430 * 304.99931 * 5 4 3 7 7 C 1.52998 * 109.47074 * 65.00371 * 5 4 3 8 8 C 1.47204 * 109.47316 * 184.99951 * 5 4 3 9 9 N 5.69649 * 118.01500 * 309.96826 * 2 1 3 10 10 C 1.34774 * 119.99827 * 89.99559 * 3 2 1 11 11 O 1.21286 * 119.99508 * 180.02562 * 10 3 2 12 12 C 1.50696 * 120.00343 * 0.02562 * 10 3 2 13 13 O 1.45199 * 109.47042 * 180.02562 * 12 10 3 14 14 C 1.34709 * 117.00167 * 180.02562 * 13 12 10 15 15 O 1.21466 * 119.99709 * 359.97438 * 14 13 12 16 16 C 1.47768 * 120.00018 * 179.97438 * 14 13 12 17 17 C 1.39969 * 120.03207 * 359.97279 * 16 14 13 18 18 C 1.38312 * 120.35127 * 180.02562 * 17 16 14 19 19 C 1.37765 * 120.42213 * 359.97438 * 18 17 16 20 20 C 1.40751 * 120.04496 * 0.04792 * 19 18 17 21 21 C 1.41440 * 120.17133 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00449 * 24.36772 * 21 20 19 23 23 C 1.39939 * 120.00118 * 204.36004 * 21 20 19 24 24 N 1.30833 * 119.99602 * 17.84988 * 23 21 20 25 25 Si 1.86794 * 120.00363 * 197.84730 * 23 21 20 26 26 H 1.48502 * 109.46984 * 94.69280 * 25 23 21 27 27 H 1.48502 * 109.47449 * 214.69477 * 25 23 21 28 28 H 1.48500 * 109.47426 * 334.69885 * 25 23 21 29 29 C 1.39056 * 120.02792 * 180.02562 * 16 14 13 30 30 H 1.09002 * 109.47093 * 300.00184 * 1 2 3 31 31 H 1.09003 * 109.46760 * 60.00673 * 1 2 3 32 32 H 1.08996 * 109.46791 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47747 * 239.99487 * 2 1 3 34 34 H 1.09003 * 109.46760 * 119.99327 * 2 1 3 35 35 H 1.09000 * 109.47347 * 29.99676 * 4 3 2 36 36 H 1.09000 * 109.47334 * 150.00117 * 4 3 2 37 37 H 1.08997 * 109.47211 * 60.00014 * 7 5 4 38 38 H 1.08997 * 109.47326 * 179.97438 * 7 5 4 39 39 H 1.08998 * 109.47163 * 299.99561 * 7 5 4 40 40 H 1.08997 * 109.47397 * 60.00199 * 12 10 3 41 41 H 1.08999 * 109.47094 * 299.99678 * 12 10 3 42 42 H 1.07996 * 119.82135 * 0.02562 * 17 16 14 43 43 H 1.08000 * 119.79100 * 179.97438 * 18 17 16 44 44 H 1.07995 * 119.97732 * 179.97438 * 19 18 17 45 45 H 0.96999 * 119.99513 * 179.97438 * 24 23 21 46 46 H 1.07998 * 120.19980 * 359.69548 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7103 6 1 4.3863 2.1342 -0.9131 7 6 3.9076 0.3451 -2.0134 8 6 3.9887 2.6210 -2.9204 9 7 4.2057 3.2304 -3.8542 10 6 2.2429 2.0166 1.1672 11 8 2.6468 3.1602 1.1671 12 6 1.9922 1.3061 2.4723 13 8 2.3060 2.1960 3.5759 14 6 2.1352 1.7103 4.8207 15 8 1.7346 0.5747 4.9799 16 6 2.4351 2.5591 5.9925 17 6 2.8972 3.8676 5.8098 18 6 3.1805 4.6677 6.9019 19 6 3.0108 4.1868 8.1817 20 6 2.5474 2.8734 8.3854 21 6 2.3727 2.3768 9.6981 22 1 2.2054 3.0612 10.5167 23 6 2.4166 0.9985 9.9365 24 7 2.9530 0.1984 9.0512 25 14 1.7093 0.3012 11.5184 26 1 0.3095 -0.1358 11.2844 27 1 2.5242 -0.8609 11.9551 28 1 1.7317 1.3459 12.5735 29 6 2.2595 2.0582 7.2778 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 1.5817 1.6876 -2.0284 36 1 2.0956 3.1410 -1.1385 37 1 3.2289 0.0423 -2.8107 38 1 4.9369 0.1739 -2.3284 39 1 3.6995 -0.2397 -1.1174 40 1 2.6227 0.4188 2.5300 41 1 0.9444 1.0116 2.5302 42 1 3.0334 4.2545 4.8108 43 1 3.5370 5.6758 6.7505 44 1 3.2346 4.8176 9.0293 45 1 2.9837 -0.7569 9.2165 46 1 1.8992 1.0506 7.4236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051537007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:53 Heat of formation + Delta-G solvation = -76.728500 kcal Electronic energy + Delta-G solvation = -28983.392064 eV Core-core repulsion = 24838.122381 eV Total energy + Delta-G solvation = -4145.269683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.66900 -39.66100 -37.78237 -37.33454 -36.40163 -35.72984 -34.02450 -33.76877 -30.84410 -30.57076 -29.55226 -29.10180 -26.81893 -25.38400 -24.07335 -23.56580 -22.86172 -21.01276 -19.92618 -19.49823 -18.21593 -18.03830 -17.16157 -16.97143 -16.45935 -16.11193 -15.84865 -15.46539 -15.08163 -14.86024 -14.63391 -14.38764 -14.18822 -13.98128 -13.49846 -13.40351 -13.26594 -13.14856 -13.05427 -12.87950 -12.67967 -12.64340 -12.35506 -12.24190 -11.98489 -11.76465 -11.70192 -11.52196 -11.40529 -11.23073 -11.14485 -10.77475 -10.55026 -10.46984 -10.28012 -10.02211 -9.73759 -9.55251 -9.27151 -9.19594 -7.77669 -7.57687 -6.85551 -4.45890 1.91045 2.08163 2.27457 2.41890 2.49868 2.75713 3.04815 3.08394 3.11444 3.21861 3.52464 3.59974 3.88094 4.11490 4.31584 4.42091 4.43571 4.54718 4.65839 4.73013 4.89827 4.97735 5.01890 5.07537 5.19296 5.23449 5.28347 5.39123 5.47627 5.51725 5.54821 5.60542 5.78855 6.02714 6.12606 6.43101 6.54916 6.79428 6.88630 6.91596 6.94628 7.14490 7.17667 7.28626 7.66140 7.73356 7.84131 7.88537 8.07628 8.41198 8.43847 8.74307 8.76618 10.09902 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.002164 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.538619 B =12933.680642 C =13859.074071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.092 3.908 3 N -0.612 5.612 4 C 0.127 3.873 5 C -0.015 4.015 6 H 0.121 0.879 7 C -0.149 4.149 8 C 0.215 3.785 9 N -0.431 5.431 10 C 0.520 3.480 11 O -0.505 6.505 12 C 0.048 3.952 13 O -0.332 6.332 14 C 0.515 3.485 15 O -0.517 6.517 16 C -0.116 4.116 17 C -0.189 4.189 18 C -0.104 4.104 19 C -0.199 4.199 20 C 0.094 3.906 21 C -0.460 4.460 22 H 0.083 0.917 23 C 0.073 3.927 24 N -0.788 5.788 25 Si 0.912 3.088 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.261 1.261 29 C -0.088 4.088 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.284 0.716 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 -5.484 -17.622 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.031 4.031 3 N -0.348 5.348 4 C 0.003 3.997 5 C -0.038 4.038 6 H 0.138 0.862 7 C -0.208 4.208 8 C -0.104 4.104 9 N -0.107 5.107 10 C 0.307 3.693 11 O -0.378 6.378 12 C -0.030 4.030 13 O -0.249 6.249 14 C 0.362 3.638 15 O -0.407 6.407 16 C -0.117 4.117 17 C -0.209 4.209 18 C -0.123 4.123 19 C -0.218 4.218 20 C 0.091 3.909 21 C -0.489 4.489 22 H 0.101 0.899 23 C -0.146 4.146 24 N -0.412 5.412 25 Si 0.736 3.264 26 H -0.192 1.192 27 H -0.202 1.202 28 H -0.185 1.185 29 C -0.107 4.107 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.095 0.905 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.458 -4.527 -19.019 19.704 hybrid contribution -0.340 -0.897 0.920 1.329 sum -2.798 -5.424 -18.099 19.100 Atomic orbital electron populations 1.22249 0.95327 1.02908 1.02938 1.21905 0.95094 0.81740 1.04319 1.47822 1.67219 1.14841 1.04917 1.21342 0.93207 0.99948 0.85232 1.19325 1.00220 0.94330 0.89895 0.86164 1.21957 1.03225 0.92486 1.03082 1.28923 0.93611 0.93597 0.94267 1.81246 1.08251 1.09403 1.11783 1.20274 0.77550 0.86750 0.84733 1.90777 1.43045 1.17098 1.86832 1.22588 1.03267 0.92995 0.84162 1.86696 1.79985 1.43757 1.14455 1.21997 0.73430 0.86059 0.82290 1.90763 1.43870 1.19801 1.86280 1.18778 1.09144 0.94242 0.89537 1.20647 1.08724 0.93651 0.97887 1.20534 1.00826 0.97954 0.92952 1.21208 1.07362 0.97892 0.95380 1.17540 0.89275 0.90881 0.93170 1.19579 1.43466 0.91849 0.93979 0.89916 1.25964 0.92701 0.97253 0.98659 1.69786 1.30640 1.05845 1.34966 0.86240 0.79760 0.78973 0.81451 1.19223 1.20206 1.18498 1.21644 0.99130 1.01052 0.88894 0.92028 0.92035 0.90935 0.89083 0.89562 0.89143 0.88608 0.91552 0.91413 0.90079 0.88334 0.88398 0.87510 0.88434 0.88295 0.90470 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 10.24 37.16 0.38 -0.45 16 2 C 0.09 0.41 5.00 -4.04 -0.02 0.39 16 3 N -0.61 -4.49 2.30 -173.69 -0.40 -4.89 16 4 C 0.13 0.80 4.85 -4.04 -0.02 0.78 16 5 C -0.01 -0.09 2.97 -93.41 -0.28 -0.37 16 6 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 7 C -0.15 -0.56 8.14 37.16 0.30 -0.26 16 8 C 0.21 1.87 14.65 -20.76 -0.30 1.57 16 9 N -0.43 -5.06 18.54 42.15 0.78 -4.28 16 10 C 0.52 6.18 7.75 -10.99 -0.09 6.10 16 11 O -0.50 -8.09 16.08 -14.11 -0.23 -8.32 16 12 C 0.05 0.62 4.51 36.00 0.16 0.78 16 13 O -0.33 -6.17 8.99 -47.20 -0.42 -6.59 16 14 C 0.51 11.08 7.90 34.63 0.27 11.35 16 15 O -0.52 -11.66 16.12 -19.24 -0.31 -11.97 16 16 C -0.12 -2.74 5.87 -105.05 -0.62 -3.36 16 17 C -0.19 -4.21 9.62 -38.91 -0.37 -4.59 16 18 C -0.10 -2.26 10.01 -39.73 -0.40 -2.66 16 19 C -0.20 -4.65 9.78 -38.81 -0.38 -5.03 16 20 C 0.09 2.42 5.57 -106.88 -0.60 1.83 16 21 C -0.46 -11.74 9.05 -37.73 -0.34 -12.08 16 22 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 23 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 24 N -0.79 -20.10 10.95 55.55 0.61 -19.49 16 25 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 27 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 28 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 29 C -0.09 -2.27 8.23 -38.43 -0.32 -2.59 16 30 H 0.06 0.39 7.22 -51.93 -0.38 0.02 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.20 5.98 -51.93 -0.31 -0.11 16 34 H 0.09 0.38 6.44 -51.93 -0.33 0.05 16 35 H 0.09 0.36 8.07 -51.93 -0.42 -0.06 16 36 H 0.10 0.79 7.42 -51.93 -0.39 0.41 16 37 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.25 5.89 -51.93 -0.31 -0.06 16 40 H 0.10 1.11 7.40 -51.93 -0.38 0.72 16 41 H 0.10 1.13 7.18 -51.93 -0.37 0.76 16 42 H 0.11 2.22 7.59 -52.49 -0.40 1.82 16 43 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 45 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 46 H 0.14 3.72 5.74 -52.49 -0.30 3.42 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -32.46 395.14 -7.84 -40.30 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.10 Total: 3.01 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.70 Total: -6.88 kcal Atomic # 7 Polarization: -29.65 SS G_CDS: 0.99 Total: -28.66 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.96 Total: -26.88 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.46 -7.84 -40.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051537007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.432 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds