Wall clock time and date at job start Tue Mar 31 2020 07:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86802 * 119.99909 * 2 1 4 4 H 1.48490 * 109.47157 * 239.99971 * 3 2 1 5 5 H 1.48503 * 109.46871 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46770 * 119.99810 * 3 2 1 7 7 C 1.39887 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00343 * 185.47304 * 7 2 1 9 9 C 1.41220 * 119.99894 * 5.47532 * 7 2 1 10 10 C 1.40838 * 120.18131 * 214.33835 * 9 7 2 11 11 C 1.36433 * 119.81263 * 180.02562 * 10 9 7 12 12 C 1.39314 * 120.18493 * 0.02562 * 11 10 9 13 13 O 1.35675 * 119.81486 * 179.97438 * 12 11 10 14 14 C 1.42898 * 116.99650 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46870 * 179.97438 * 14 13 12 16 16 O 1.21274 * 120.00051 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99834 * 179.97438 * 15 14 13 18 18 C 1.48120 * 121.83678 * 354.00123 * 17 15 14 19 19 C 1.53173 * 109.07787 * 230.29112 * 18 17 15 20 20 O 1.43176 * 109.82931 * 308.95156 * 19 18 17 21 21 C 1.42567 * 113.51933 * 61.53230 * 20 19 18 22 22 H 1.08994 * 108.82811 * 55.55472 * 21 20 19 23 23 C 1.52681 * 111.11575 * 176.34293 * 21 20 19 24 24 C 1.53201 * 108.88829 * 181.34755 * 23 21 20 25 25 C 1.52885 * 109.98902 * 300.60850 * 24 23 21 26 26 C 1.53199 * 109.98343 * 58.73172 * 25 24 23 27 27 C 1.46843 * 121.36322 * 174.36150 * 17 15 14 28 28 H 1.09001 * 109.57313 * 247.27224 * 27 17 15 29 29 C 1.39311 * 120.36244 * 0.24843 * 12 11 10 30 30 C 1.36435 * 120.18638 * 359.48563 * 29 12 11 31 31 H 0.96999 * 120.00059 * 359.97438 * 1 2 3 32 32 H 1.08002 * 120.09165 * 0.02562 * 10 9 7 33 33 H 1.07996 * 119.90686 * 179.97438 * 11 10 9 34 34 H 1.08997 * 109.47709 * 59.99848 * 14 13 12 35 35 H 1.08997 * 109.47170 * 299.99803 * 14 13 12 36 36 H 1.09006 * 109.49462 * 110.39644 * 18 17 15 37 37 H 1.09007 * 109.55143 * 350.21891 * 18 17 15 38 38 H 1.09002 * 109.41271 * 188.83768 * 19 18 17 39 39 H 1.09000 * 109.35144 * 69.02939 * 19 18 17 40 40 H 1.08993 * 109.57256 * 61.52093 * 23 21 20 41 41 H 1.09001 * 109.66516 * 301.22611 * 23 21 20 42 42 H 1.09002 * 109.38345 * 180.45188 * 24 23 21 43 43 H 1.09005 * 109.38535 * 60.77053 * 24 23 21 44 44 H 1.08994 * 109.38530 * 298.57871 * 25 24 23 45 45 H 1.09002 * 109.30041 * 178.83244 * 25 24 23 46 46 H 1.08999 * 109.56682 * 180.72971 * 26 25 24 47 47 H 1.09001 * 109.67253 * 60.43087 * 26 25 24 48 48 H 1.08003 * 119.90450 * 179.72397 * 29 12 11 49 49 H 1.08007 * 120.09320 * 180.25091 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2124 5 1 1.2777 2.7464 0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0082 -1.2114 0.0005 8 1 3.0846 -1.2136 0.0897 9 6 1.3070 -2.4317 -0.1156 10 6 1.7672 -3.5797 0.5580 11 6 1.0842 -4.7549 0.4401 12 6 -0.0652 -4.8213 -0.3443 13 8 -0.7384 -5.9939 -0.4567 14 6 -1.9093 -5.9938 -1.2758 15 6 -2.5185 -7.3722 -1.2814 16 8 -2.0012 -8.2664 -0.6462 17 7 -3.6389 -7.6108 -1.9916 18 6 -4.3778 -6.5236 -2.6741 19 6 -5.8600 -6.6130 -2.2982 20 8 -6.3363 -7.9459 -2.5138 21 6 -5.6694 -8.9238 -1.7191 22 1 -5.7518 -8.6401 -0.6699 23 6 -6.2788 -10.3085 -1.9250 24 6 -5.5486 -11.3105 -1.0250 25 6 -4.0601 -11.3372 -1.3727 26 6 -3.4564 -9.9400 -1.1978 27 6 -4.1894 -8.9663 -2.1181 28 1 -4.0992 -9.3022 -3.1512 29 6 -0.5240 -3.6918 -1.0184 30 6 0.1444 -2.5076 -0.9067 31 1 -0.4850 0.8400 0.0004 32 1 2.6584 -3.5300 1.1661 33 1 1.4360 -5.6362 0.9556 34 1 -1.6407 -5.7116 -2.2938 35 1 -2.6302 -5.2791 -0.8790 36 1 -4.2678 -6.6306 -3.7533 37 1 -3.9791 -5.5588 -2.3604 38 1 -6.4325 -5.9196 -2.9143 39 1 -5.9827 -6.3499 -1.2475 40 1 -6.1668 -10.6053 -2.9678 41 1 -7.3367 -10.2863 -1.6635 42 1 -5.9723 -12.3040 -1.1717 43 1 -5.6715 -11.0168 0.0175 44 1 -3.9358 -11.6580 -2.4069 45 1 -3.5484 -12.0376 -0.7126 46 1 -2.3987 -9.9640 -1.4597 47 1 -3.5689 -9.6187 -0.1623 48 1 -1.4134 -3.7527 -1.6281 49 1 -0.2149 -1.6318 -1.4268 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053310031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:11 Heat of formation + Delta-G solvation = -89.863449 kcal Electronic energy + Delta-G solvation = -30372.500841 eV Core-core repulsion = 26264.776017 eV Total energy + Delta-G solvation = -4107.724824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.11689 -39.21644 -38.27689 -36.96611 -36.29795 -34.98540 -33.30630 -31.14783 -30.71061 -29.79046 -29.47800 -28.64645 -27.08974 -24.75093 -23.94353 -23.19682 -22.10697 -21.23816 -20.66658 -20.40980 -19.19214 -17.55337 -17.26533 -17.19707 -16.39497 -16.27339 -16.13336 -15.51662 -15.34624 -15.26910 -14.84624 -14.56585 -14.00234 -13.97415 -13.79076 -13.74084 -13.32731 -13.17401 -12.86370 -12.56983 -12.49929 -12.38163 -11.94232 -11.77093 -11.69686 -11.63421 -11.49151 -11.32643 -11.17706 -11.08487 -11.05633 -10.82052 -10.69065 -10.65746 -10.41324 -9.96841 -9.79216 -9.44521 -9.14023 -9.11041 -8.66643 -7.72717 -6.95179 -6.66905 -4.32361 2.44568 2.52305 2.73613 2.90898 3.07909 3.11131 3.17748 3.29179 3.90677 3.97275 4.26033 4.44031 4.51515 4.59258 4.64896 4.68043 4.72773 4.86027 4.89275 4.93209 4.93599 5.15228 5.18609 5.25942 5.29745 5.33986 5.40827 5.48090 5.56428 5.58436 5.64066 5.71831 5.85438 5.89706 5.99366 6.08763 6.15196 6.21783 6.42607 6.59951 6.78602 6.82098 7.03618 7.11043 7.26146 7.33155 7.51830 7.79864 7.96340 8.07473 8.12485 8.37366 8.59943 8.89658 8.94266 10.30012 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.002139 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.485984 B =13086.581260 C =14071.237000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.468 4.468 8 H 0.075 0.925 9 C 0.087 3.913 10 C -0.184 4.184 11 C -0.115 4.115 12 C -0.001 4.001 13 O -0.304 6.304 14 C 0.052 3.948 15 C 0.524 3.476 16 O -0.506 6.506 17 N -0.619 5.619 18 C 0.070 3.930 19 C 0.049 3.951 20 O -0.376 6.376 21 C 0.078 3.922 22 H 0.062 0.938 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.108 4.108 27 C 0.122 3.878 28 H 0.079 0.921 29 C -0.181 4.181 30 C -0.119 4.119 31 H 0.278 0.722 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.094 0.906 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.316 -14.773 -6.414 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.499 4.499 8 H 0.093 0.907 9 C 0.085 3.915 10 C -0.203 4.203 11 C -0.133 4.133 12 C -0.045 4.045 13 O -0.219 6.219 14 C -0.028 4.028 15 C 0.312 3.688 16 O -0.380 6.380 17 N -0.357 5.357 18 C -0.053 4.053 19 C -0.029 4.029 20 O -0.295 6.295 21 C 0.020 3.980 22 H 0.080 0.920 23 C -0.145 4.145 24 C -0.156 4.156 25 C -0.166 4.166 26 C -0.146 4.146 27 C 0.018 3.982 28 H 0.097 0.903 29 C -0.200 4.200 30 C -0.138 4.138 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.276 -15.291 -6.079 21.785 hybrid contribution 0.260 1.351 -0.014 1.376 sum -14.016 -13.940 -6.094 20.686 Atomic orbital electron populations 1.69763 1.07252 1.28855 1.38589 1.25818 0.94889 1.00977 0.92609 0.86309 0.79861 0.80349 0.79765 1.19067 1.20502 1.19156 1.19386 0.94794 0.90088 1.45615 0.90656 1.17625 0.92202 0.92304 0.89372 1.20747 1.02199 0.93377 1.03991 1.19649 0.94738 0.97932 1.01021 1.18659 0.96341 0.83981 1.05471 1.85915 1.37295 1.32406 1.66239 1.22159 0.89554 0.94087 0.96981 1.20366 0.79650 0.90398 0.78377 1.90731 1.61247 1.45273 1.40752 1.48271 1.26128 1.08362 1.52929 1.22642 0.92865 0.91275 0.98476 1.22971 0.93404 0.84667 1.01842 1.87934 1.60675 1.15703 1.65145 1.22490 0.90920 0.89855 0.94752 0.92018 1.21443 1.00043 0.91739 1.01234 1.21548 0.95584 0.98818 0.99660 1.21742 0.95199 0.97859 1.01809 1.21983 1.00581 0.92053 0.99960 1.21902 0.93349 0.82135 1.00771 0.90313 1.20601 1.01335 0.94100 1.03951 1.20960 0.97728 0.95470 0.99643 0.91138 0.87920 0.88199 0.90081 0.90229 0.90012 0.88405 0.87178 0.92375 0.90866 0.90745 0.91215 0.91697 0.91978 0.91268 0.89012 0.90645 0.88813 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.02 10.96 55.54 0.61 -20.41 16 2 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 3 Si 0.91 18.76 29.56 -169.99 -5.03 13.74 16 4 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.47 -12.29 9.03 -37.83 -0.34 -12.64 16 8 H 0.08 1.90 7.85 -52.48 -0.41 1.49 16 9 C 0.09 2.29 5.50 -106.80 -0.59 1.70 16 10 C -0.18 -4.49 9.74 -39.25 -0.38 -4.87 16 11 C -0.11 -2.68 9.92 -39.83 -0.40 -3.07 16 12 C 0.00 -0.03 6.71 -38.78 -0.26 -0.29 16 13 O -0.30 -6.40 9.65 -38.64 -0.37 -6.78 16 14 C 0.05 0.82 3.75 36.01 0.14 0.96 16 15 C 0.52 8.00 7.74 -10.98 -0.08 7.91 16 16 O -0.51 -9.26 12.28 -14.35 -0.18 -9.43 16 17 N -0.62 -7.33 3.05 -164.39 -0.50 -7.83 16 18 C 0.07 0.62 6.53 -3.06 -0.02 0.60 16 19 C 0.05 0.39 6.95 37.25 0.26 0.65 16 20 O -0.38 -3.77 10.50 -35.23 -0.37 -4.14 16 21 C 0.08 0.76 2.51 -26.71 -0.07 0.70 16 22 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 23 C -0.11 -0.83 5.68 -26.79 -0.15 -0.98 16 24 C -0.12 -0.86 5.91 -26.69 -0.16 -1.02 16 25 C -0.13 -1.09 5.90 -26.69 -0.16 -1.25 16 26 C -0.11 -1.25 3.70 -26.77 -0.10 -1.35 16 27 C 0.12 1.32 2.80 -67.71 -0.19 1.13 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 C -0.18 -4.07 8.96 -39.83 -0.36 -4.42 16 30 C -0.12 -2.99 8.57 -39.25 -0.34 -3.32 16 31 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 32 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.08 1.16 7.63 -51.93 -0.40 0.76 16 35 H 0.08 1.15 6.98 -51.93 -0.36 0.79 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.77 6.20 -51.93 -0.32 0.45 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 1.28 6.47 -51.93 -0.34 0.94 16 47 H 0.07 1.02 7.28 -51.93 -0.38 0.64 16 48 H 0.09 1.78 6.27 -52.48 -0.33 1.45 16 49 H 0.12 3.14 6.47 -52.48 -0.34 2.80 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -30.57 381.65 -10.88 -41.45 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.50 Total: 5.52 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -3.29 Total: -17.87 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.11 Total: -28.24 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.92 Total: -20.36 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.57 -10.88 -41.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053310031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.412 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds