Wall clock time and date at job start Tue Mar 31 2020 07:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48493 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47014 * 299.99793 * 3 2 1 6 6 H 1.48497 * 109.46997 * 59.99540 * 3 2 1 7 7 C 1.39893 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99931 * 197.95723 * 7 2 1 9 9 C 1.41210 * 119.99654 * 17.95661 * 7 2 1 10 10 C 1.40834 * 120.17975 * 204.54656 * 9 7 2 11 11 C 1.36440 * 119.81152 * 179.97438 * 10 9 7 12 12 C 1.39312 * 120.18524 * 0.02562 * 11 10 9 13 13 O 1.35673 * 119.81393 * 180.02562 * 12 11 10 14 14 C 1.42903 * 116.99949 * 179.97438 * 13 12 11 15 15 C 1.50691 * 109.47564 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99922 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00589 * 179.97438 * 15 14 13 18 18 C 1.47177 * 121.17781 * 359.72251 * 17 15 14 19 19 C 1.53693 * 108.39253 * 129.05646 * 18 17 15 20 20 O 1.43063 * 109.32554 * 52.00637 * 19 18 17 21 21 C 1.42718 * 113.93401 * 298.07583 * 20 19 18 22 22 H 1.09003 * 108.99753 * 304.02624 * 21 20 19 23 23 C 1.52526 * 110.01920 * 184.55836 * 21 20 19 24 24 C 1.52967 * 109.91997 * 297.78618 * 23 21 20 25 25 C 1.53059 * 109.17286 * 300.22003 * 24 23 21 26 26 C 1.51914 * 110.15564 * 60.02415 * 25 24 23 27 27 C 1.47514 * 121.18597 * 179.97438 * 17 15 14 28 28 H 1.09003 * 110.16759 * 351.84176 * 27 17 15 29 29 C 1.39313 * 120.36478 * 0.27301 * 12 11 10 30 30 C 1.36440 * 120.18421 * 359.44339 * 29 12 11 31 31 H 0.96999 * 120.00463 * 0.02562 * 1 2 3 32 32 H 1.07996 * 120.09281 * 0.02562 * 10 9 7 33 33 H 1.07993 * 119.90358 * 180.02562 * 11 10 9 34 34 H 1.09004 * 109.46795 * 300.00233 * 14 13 12 35 35 H 1.09005 * 109.47024 * 59.99691 * 14 13 12 36 36 H 1.08998 * 109.60713 * 248.86118 * 18 17 15 37 37 H 1.09003 * 109.60726 * 9.36887 * 18 17 15 38 38 H 1.09001 * 109.64453 * 291.97921 * 19 18 17 39 39 H 1.09005 * 109.41480 * 171.89414 * 19 18 17 40 40 H 1.09000 * 109.39135 * 57.92226 * 23 21 20 41 41 H 1.08993 * 109.39420 * 177.73773 * 23 21 20 42 42 H 1.09002 * 109.52005 * 60.13043 * 24 23 21 43 43 H 1.09000 * 109.51774 * 180.30861 * 24 23 21 44 44 H 1.09003 * 109.49934 * 180.66891 * 25 24 23 45 45 H 1.09000 * 109.50831 * 300.74276 * 25 24 23 46 46 H 1.09000 * 110.34978 * 180.15271 * 26 25 24 47 47 H 1.08995 * 107.95059 * 60.68024 * 26 25 24 48 48 H 1.07997 * 119.90730 * 179.71080 * 29 12 11 49 49 H 1.07999 * 120.09013 * 180.27166 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7027 1.3465 0.0006 5 1 1.8840 2.3965 -1.2126 6 1 1.8839 2.3965 1.2124 7 6 2.0083 -1.2115 0.0005 8 1 3.0488 -1.2340 0.2889 9 6 1.3539 -2.4048 -0.3760 10 6 1.8264 -3.6479 0.0874 11 6 1.1880 -4.7962 -0.2807 12 6 0.0720 -4.7413 -1.1128 13 8 -0.5574 -5.8878 -1.4736 14 6 -1.6957 -5.7616 -2.3282 15 6 -2.2594 -7.1285 -2.6194 16 8 -1.7379 -8.1138 -2.1417 17 7 -3.3436 -7.2561 -3.4097 18 6 -4.0012 -6.0777 -3.9972 19 6 -4.1619 -6.3145 -5.5072 20 8 -4.7999 -7.5767 -5.7233 21 6 -4.0573 -8.6923 -5.2327 22 1 -3.0643 -8.6830 -5.6823 23 6 -4.7600 -9.9930 -5.6079 24 6 -6.1413 -10.0468 -4.9528 25 6 -5.9799 -9.9711 -3.4326 26 6 -5.2909 -8.6744 -3.0433 27 6 -3.9165 -8.5813 -3.7123 28 1 -3.2621 -9.3682 -3.3373 29 6 -0.3981 -3.5162 -1.5805 30 6 0.2253 -2.3582 -1.2172 31 1 -0.4851 0.8400 -0.0004 32 1 2.6911 -3.6921 0.7328 33 1 1.5488 -5.7502 0.0741 34 1 -2.4544 -5.1536 -1.8353 35 1 -1.3980 -5.2845 -3.2620 36 1 -4.9806 -5.9392 -3.5392 37 1 -3.3869 -5.1935 -3.8275 38 1 -3.1818 -6.3163 -5.9842 39 1 -4.7732 -5.5201 -5.9355 40 1 -4.8708 -10.0452 -6.6910 41 1 -4.1645 -10.8385 -5.2638 42 1 -6.7411 -9.2046 -5.2979 43 1 -6.6352 -10.9809 -5.2206 44 1 -6.9608 -10.0210 -2.9597 45 1 -5.3677 -10.8051 -3.0896 46 1 -5.1719 -8.6184 -1.9613 47 1 -5.9152 -7.8475 -3.3817 48 1 -1.2611 -3.4826 -2.2290 49 1 -0.1431 -1.4089 -1.5772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053310033.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:17 Heat of formation + Delta-G solvation = -99.690976 kcal Electronic energy + Delta-G solvation = -30311.651700 eV Core-core repulsion = 26203.500723 eV Total energy + Delta-G solvation = -4108.150978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.08002 -39.28173 -38.26153 -36.55410 -36.29644 -35.11920 -33.39275 -31.09255 -30.90695 -29.75303 -29.50805 -28.67168 -27.24017 -24.77557 -23.96236 -23.00279 -22.72084 -21.29090 -20.69536 -19.70954 -19.04179 -17.75769 -17.34845 -16.99855 -16.39603 -16.31550 -16.10952 -15.99026 -15.37517 -15.15839 -14.69384 -14.49307 -14.03934 -13.97382 -13.93771 -13.57017 -13.31972 -13.00893 -12.85603 -12.78944 -12.46245 -12.43603 -12.22521 -11.95653 -11.71023 -11.62795 -11.53741 -11.36333 -11.17132 -11.03551 -10.98005 -10.75140 -10.65391 -10.52286 -10.28960 -10.04027 -9.83193 -9.69362 -9.39080 -9.06234 -8.74455 -7.70631 -7.07095 -6.77575 -4.29497 2.46365 2.53841 2.71354 2.92489 3.06124 3.11407 3.16875 3.35082 3.91894 3.96680 4.25112 4.40896 4.48473 4.53489 4.56747 4.64932 4.71213 4.79737 4.87031 4.88807 5.08630 5.14280 5.15580 5.24481 5.30113 5.32581 5.40987 5.43823 5.50409 5.62955 5.64435 5.71559 5.79149 5.85531 5.94060 6.01423 6.09059 6.19719 6.24926 6.63312 6.80464 6.84458 7.02226 7.11105 7.23206 7.35464 7.51349 7.83452 7.95484 8.06581 8.12185 8.37996 8.59513 8.85968 8.94020 10.17315 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023691 B = 0.002084 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.584999 B =13434.730029 C =14085.241935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.088 3.912 10 C -0.195 4.195 11 C -0.107 4.107 12 C -0.014 4.014 13 O -0.304 6.304 14 C 0.054 3.946 15 C 0.523 3.477 16 O -0.515 6.515 17 N -0.618 5.618 18 C 0.068 3.932 19 C 0.048 3.952 20 O -0.370 6.370 21 C 0.085 3.915 22 H 0.060 0.940 23 C -0.109 4.109 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.124 4.124 27 C 0.118 3.882 28 H 0.109 0.891 29 C -0.174 4.174 30 C -0.134 4.134 31 H 0.279 0.721 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.827 -12.565 -12.090 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.086 3.914 10 C -0.215 4.215 11 C -0.126 4.126 12 C -0.057 4.057 13 O -0.219 6.219 14 C -0.025 4.025 15 C 0.311 3.689 16 O -0.389 6.389 17 N -0.355 5.355 18 C -0.055 4.055 19 C -0.030 4.030 20 O -0.289 6.289 21 C 0.026 3.974 22 H 0.078 0.922 23 C -0.147 4.147 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.162 4.162 27 C 0.015 3.985 28 H 0.126 0.874 29 C -0.193 4.193 30 C -0.154 4.154 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.810 -13.129 -11.815 22.420 hybrid contribution 0.370 1.298 0.097 1.353 sum -13.440 -11.831 -11.718 21.399 Atomic orbital electron populations 1.69842 1.07537 1.29007 1.36143 1.25887 0.94722 1.01280 0.92338 0.86284 0.81044 0.81034 0.78498 1.18411 1.19774 1.20059 1.19512 0.98187 0.91169 1.40215 0.90376 1.17619 0.91782 0.92206 0.89835 1.20613 1.03215 0.92133 1.05491 1.19625 0.95249 0.97854 0.99849 1.18598 0.97956 0.83474 1.05703 1.85914 1.40875 1.30691 1.64465 1.22108 0.90571 0.93701 0.96141 1.20453 0.79343 0.91358 0.77788 1.90707 1.58706 1.39867 1.49590 1.48305 1.29513 1.07379 1.50336 1.22589 0.99500 0.88750 0.94646 1.23071 0.98934 0.86690 0.94278 1.87929 1.46806 1.13878 1.80260 1.22233 0.95327 0.87535 0.92283 0.92168 1.21444 0.97039 0.94694 1.01510 1.21483 0.96720 1.02233 0.94947 1.21307 1.00570 0.97461 0.96120 1.21593 0.95168 0.99006 1.00424 1.21925 0.95566 0.85825 0.95140 0.87353 1.20562 1.01502 0.92880 1.04349 1.20927 0.98572 0.96408 0.99482 0.91020 0.88053 0.88295 0.90057 0.90220 0.90030 0.88486 0.92381 0.87364 0.90701 0.90243 0.90994 0.91736 0.91468 0.91972 0.91384 0.91233 0.88926 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.26 10.96 55.54 0.61 -19.65 16 2 C 0.07 1.84 5.13 -17.34 -0.09 1.75 16 3 Si 0.91 18.39 29.60 -169.99 -5.03 13.36 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 6 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.07 9.04 -37.83 -0.34 -12.41 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.09 2.32 5.57 -106.80 -0.60 1.72 16 10 C -0.19 -4.81 9.74 -39.25 -0.38 -5.19 16 11 C -0.11 -2.54 9.92 -39.83 -0.40 -2.93 16 12 C -0.01 -0.33 6.71 -38.78 -0.26 -0.59 16 13 O -0.30 -6.59 9.65 -38.63 -0.37 -6.97 16 14 C 0.05 0.89 3.59 36.00 0.13 1.01 16 15 C 0.52 8.30 7.80 -10.99 -0.09 8.21 16 16 O -0.51 -10.21 16.00 -14.36 -0.23 -10.44 16 17 N -0.62 -7.36 2.68 -164.25 -0.44 -7.80 16 18 C 0.07 0.60 6.08 -3.31 -0.02 0.58 16 19 C 0.05 0.37 7.00 37.52 0.26 0.64 16 20 O -0.37 -3.45 9.49 -35.23 -0.33 -3.79 16 21 C 0.08 0.78 2.79 -26.92 -0.08 0.71 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 C -0.11 -0.79 5.64 -26.99 -0.15 -0.94 16 24 C -0.12 -0.80 5.84 -26.72 -0.16 -0.96 16 25 C -0.12 -0.87 5.85 -27.25 -0.16 -1.03 16 26 C -0.12 -1.16 5.12 -27.21 -0.14 -1.29 16 27 C 0.12 1.27 2.70 -67.26 -0.18 1.09 16 28 H 0.11 1.34 7.13 -51.93 -0.37 0.97 16 29 C -0.17 -3.96 8.96 -39.83 -0.36 -4.31 16 30 C -0.13 -3.40 8.64 -39.25 -0.34 -3.74 16 31 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 32 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 33 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.08 1.21 7.52 -51.93 -0.39 0.82 16 35 H 0.08 1.15 7.18 -51.93 -0.37 0.77 16 36 H 0.08 0.65 7.35 -51.93 -0.38 0.27 16 37 H 0.10 0.78 6.07 -51.93 -0.32 0.46 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.55 7.80 -51.93 -0.40 0.15 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.65 6.81 -51.93 -0.35 0.29 16 48 H 0.09 1.78 6.27 -52.49 -0.33 1.45 16 49 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -31.23 383.69 -10.79 -42.03 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.44 Total: 5.17 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -3.34 Total: -17.69 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.17 Total: -27.45 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.94 Total: -21.20 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.23 -10.79 -42.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053310033.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.663 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds