Wall clock time and date at job start Tue Mar 31 2020 07:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86797 * 119.99706 * 2 1 4 4 H 1.48498 * 109.47093 * 275.40210 * 3 2 1 5 5 H 1.48496 * 109.47397 * 35.40679 * 3 2 1 6 6 H 1.48509 * 109.46773 * 155.40488 * 3 2 1 7 7 C 1.39888 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00067 * 342.05496 * 7 2 1 9 9 C 1.41217 * 119.99987 * 161.78302 * 7 2 1 10 10 C 1.40833 * 120.17621 * 329.95660 * 9 7 2 11 11 C 1.36445 * 119.80915 * 179.71808 * 10 9 7 12 12 C 1.39312 * 120.18125 * 0.55841 * 11 10 9 13 13 O 1.35668 * 119.81642 * 179.69502 * 12 11 10 14 14 C 1.42908 * 116.99879 * 0.02562 * 13 12 11 15 15 C 1.50707 * 109.46872 * 180.02562 * 14 13 12 16 16 O 1.21273 * 120.00178 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99473 * 180.02562 * 15 14 13 18 18 C 1.47163 * 121.18715 * 359.97438 * 17 15 14 19 19 C 1.53248 * 108.63940 * 230.87592 * 18 17 15 20 20 O 1.43054 * 109.40258 * 308.25194 * 19 18 17 21 21 C 1.42722 * 113.94485 * 61.77050 * 20 19 18 22 22 H 1.09005 * 108.99812 * 55.41406 * 21 20 19 23 23 C 1.52517 * 110.47258 * 175.16259 * 21 20 19 24 24 C 1.52967 * 109.92582 * 62.50050 * 23 21 20 25 25 C 1.53064 * 109.16881 * 59.78254 * 24 23 21 26 26 C 1.52901 * 109.28596 * 299.27807 * 25 24 23 27 27 C 1.47517 * 121.18117 * 179.71767 * 17 15 14 28 28 H 1.09006 * 110.16800 * 8.16699 * 27 17 15 29 29 C 1.39312 * 120.36756 * 359.71565 * 12 11 10 30 30 C 1.36438 * 120.18591 * 0.02562 * 29 12 11 31 31 H 0.96997 * 119.99763 * 0.02562 * 1 2 3 32 32 H 1.07996 * 120.09444 * 0.02562 * 10 9 7 33 33 H 1.07992 * 119.90702 * 180.27781 * 11 10 9 34 34 H 1.08994 * 109.47209 * 300.00164 * 14 13 12 35 35 H 1.08993 * 109.46848 * 60.00635 * 14 13 12 36 36 H 1.09007 * 109.61178 * 350.62240 * 18 17 15 37 37 H 1.09003 * 109.60954 * 110.96230 * 18 17 15 38 38 H 1.08996 * 109.47633 * 68.22503 * 19 18 17 39 39 H 1.08988 * 109.48612 * 188.27377 * 19 18 17 40 40 H 1.09006 * 109.39605 * 182.64415 * 23 21 20 41 41 H 1.09007 * 109.39439 * 302.36112 * 23 21 20 42 42 H 1.08993 * 109.52353 * 179.68736 * 24 23 21 43 43 H 1.08996 * 109.52097 * 299.87598 * 24 23 21 44 44 H 1.09004 * 109.50387 * 59.21315 * 25 24 23 45 45 H 1.08994 * 109.50481 * 179.29743 * 25 24 23 46 46 H 1.08995 * 109.42133 * 180.70563 * 26 25 24 47 47 H 1.08998 * 109.41378 * 300.57471 * 26 25 24 48 48 H 1.07999 * 119.90711 * 180.02562 * 29 12 11 49 49 H 1.07998 * 120.09769 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3761 2.1123 -1.3938 5 1 1.5021 2.6170 0.8111 6 1 3.5929 1.4099 0.5828 7 6 2.0083 -1.2115 0.0005 8 1 1.5077 -2.1240 0.2891 9 6 3.3674 -1.2423 -0.3818 10 6 3.8608 -0.3126 -1.3176 11 6 5.1766 -0.3455 -1.6773 12 6 6.0285 -1.3025 -1.1303 13 8 7.3341 -1.3324 -1.4979 14 6 7.7634 -0.3542 -2.4472 15 6 9.2313 -0.5414 -2.7325 16 8 9.8488 -1.4257 -2.1780 17 7 9.8576 0.2739 -3.6039 18 6 9.1335 1.3548 -4.2917 19 6 9.4102 1.2502 -5.7954 20 8 10.8222 1.1852 -6.0154 21 6 11.4489 0.0475 -5.4239 22 1 10.9556 -0.8559 -5.7828 23 6 12.9245 -0.0074 -5.8056 24 6 13.6494 1.2256 -5.2631 25 6 13.5149 1.2575 -3.7387 26 6 12.0348 1.3414 -3.3640 27 6 11.2948 0.1181 -3.8979 28 1 11.6758 -0.7938 -3.4381 29 6 5.5471 -2.2294 -0.2084 30 6 4.2352 -2.2068 0.1659 31 1 -0.4850 0.8400 -0.0004 32 1 3.2008 0.4273 -1.7455 33 1 5.5576 0.3695 -2.3913 34 1 7.1963 -0.4707 -3.3707 35 1 7.5961 0.6435 -2.0415 36 1 8.0638 1.2528 -4.1086 37 1 9.4779 2.3200 -3.9201 38 1 8.9390 0.3499 -6.1898 39 1 9.0033 2.1254 -6.3016 40 1 13.3742 -0.9064 -5.3842 41 1 13.0168 -0.0330 -6.8914 42 1 14.7039 1.1770 -5.5347 43 1 13.2043 2.1257 -5.6870 44 1 13.9461 0.3499 -3.3162 45 1 14.0403 2.1275 -3.3452 46 1 11.9371 1.3770 -2.2791 47 1 11.6022 2.2436 -3.7966 48 1 6.2142 -2.9678 0.2113 49 1 3.8637 -2.9257 0.8811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053310036.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:23 Heat of formation + Delta-G solvation = -97.656940 kcal Electronic energy + Delta-G solvation = -30452.637607 eV Core-core repulsion = 26344.574831 eV Total energy + Delta-G solvation = -4108.062775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.16073 -39.44163 -38.44896 -36.61378 -36.51033 -35.20186 -33.40640 -31.16552 -30.97713 -30.23886 -29.84271 -28.92944 -27.41111 -24.63546 -24.00783 -23.05289 -22.79399 -21.77487 -20.70151 -19.80272 -19.12419 -17.98310 -17.50058 -17.11319 -16.58376 -16.41794 -16.19358 -16.10311 -15.45329 -15.26683 -14.79252 -14.59694 -14.16593 -14.04565 -13.90765 -13.68171 -13.43744 -13.14794 -13.04306 -12.88759 -12.63952 -12.56265 -12.47125 -12.31769 -12.00167 -11.75017 -11.73674 -11.40886 -11.25402 -11.04715 -10.86098 -10.81611 -10.59075 -10.47456 -10.34163 -10.16366 -10.01307 -9.78834 -9.53517 -9.11695 -8.81941 -7.97888 -7.25584 -6.95567 -4.42956 2.36599 2.43546 2.48705 2.59113 3.04951 3.17049 3.27872 3.28330 3.82026 3.94911 4.17802 4.34036 4.43348 4.43515 4.46768 4.56933 4.62623 4.73476 4.79811 4.83564 5.01868 5.06600 5.09567 5.13698 5.17829 5.20084 5.33556 5.35422 5.37137 5.44518 5.59238 5.66322 5.73852 5.75147 5.79916 5.87776 5.90473 6.04169 6.12132 6.35665 6.56016 6.72276 6.74676 6.88590 7.04026 7.11688 7.37311 7.45110 7.73853 7.87042 7.99224 8.22301 8.34229 8.63257 8.78183 10.07483 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.002287 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.207110 B =12240.984149 C =12831.144409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.083 3.917 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.245 1.245 7 C -0.448 4.448 8 H 0.091 0.909 9 C 0.072 3.928 10 C -0.209 4.209 11 C -0.153 4.153 12 C -0.013 4.013 13 O -0.301 6.301 14 C 0.052 3.948 15 C 0.523 3.477 16 O -0.513 6.513 17 N -0.618 5.618 18 C 0.068 3.932 19 C 0.048 3.952 20 O -0.370 6.370 21 C 0.084 3.916 22 H 0.060 0.940 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.124 4.124 27 C 0.118 3.882 28 H 0.110 0.890 29 C -0.096 4.096 30 C -0.176 4.176 31 H 0.284 0.716 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.106 0.894 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.323 6.778 -12.551 26.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.168 1.168 7 C -0.476 4.476 8 H 0.109 0.891 9 C 0.069 3.931 10 C -0.228 4.228 11 C -0.171 4.171 12 C -0.056 4.056 13 O -0.216 6.216 14 C -0.028 4.028 15 C 0.311 3.689 16 O -0.387 6.387 17 N -0.355 5.355 18 C -0.055 4.055 19 C -0.029 4.029 20 O -0.288 6.288 21 C 0.025 3.975 22 H 0.078 0.922 23 C -0.146 4.146 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.162 4.162 27 C 0.015 3.985 28 H 0.128 0.872 29 C -0.115 4.115 30 C -0.195 4.195 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.124 0.876 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 22.577 6.353 -12.229 26.450 hybrid contribution -0.337 0.936 -0.044 0.996 sum 22.240 7.289 -12.273 26.427 Atomic orbital electron populations 1.69724 1.07993 1.30100 1.35799 1.26132 0.94709 1.01595 0.91107 0.86346 0.81384 0.80034 0.78661 1.19818 1.21794 1.16812 1.19388 0.93052 0.96101 1.39103 0.89129 1.17742 0.93378 0.91520 0.90472 1.20620 0.94828 1.04388 1.03011 1.20447 0.95011 0.99297 1.02389 1.18552 0.81622 1.01480 1.03963 1.85938 1.25136 1.52108 1.58444 1.22156 0.91685 0.94245 0.94689 1.20384 0.89027 0.81114 0.78407 1.90712 1.67224 1.31967 1.48811 1.48304 1.09847 1.33095 1.44254 1.22499 0.98156 0.91373 0.93520 1.22981 0.82440 1.03157 0.94355 1.87922 1.20109 1.45546 1.75232 1.22322 0.94778 0.89006 0.91378 0.92233 1.21439 0.91933 0.99397 1.01879 1.21503 0.99980 0.98594 0.95417 1.21496 0.95552 1.02289 0.96097 1.21688 0.95428 0.98075 1.01003 1.21963 0.80059 1.00819 0.95660 0.87225 1.19769 0.95732 0.98117 0.97857 1.20687 0.91967 1.03444 1.03424 0.90551 0.87858 0.88443 0.90053 0.90032 0.88590 0.90036 0.92381 0.87303 0.90195 0.90691 0.91751 0.91001 0.91750 0.91473 0.91607 0.90953 0.87608 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.46 13.93 55.54 0.77 -20.68 16 2 C 0.08 2.14 5.40 -17.34 -0.09 2.05 16 3 Si 0.91 20.41 24.52 -169.99 -4.17 16.24 16 4 H -0.27 -5.84 6.71 56.52 0.38 -5.46 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.24 -5.65 6.87 56.52 0.39 -5.26 16 7 C -0.45 -11.96 9.56 -37.83 -0.36 -12.33 16 8 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 9 C 0.07 1.80 5.10 -106.80 -0.54 1.25 16 10 C -0.21 -4.92 7.12 -39.25 -0.28 -5.20 16 11 C -0.15 -3.21 8.96 -39.83 -0.36 -3.57 16 12 C -0.01 -0.28 6.71 -38.78 -0.26 -0.54 16 13 O -0.30 -6.09 9.65 -38.62 -0.37 -6.46 16 14 C 0.05 0.78 3.59 36.01 0.13 0.91 16 15 C 0.52 7.80 7.80 -10.98 -0.09 7.72 16 16 O -0.51 -9.70 16.00 -14.35 -0.23 -9.93 16 17 N -0.62 -6.87 2.69 -164.56 -0.44 -7.32 16 18 C 0.07 0.54 6.03 -3.55 -0.02 0.52 16 19 C 0.05 0.35 6.98 37.29 0.26 0.61 16 20 O -0.37 -3.26 9.47 -35.23 -0.33 -3.59 16 21 C 0.08 0.73 2.77 -26.70 -0.07 0.65 16 22 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 23 C -0.11 -0.74 5.65 -27.00 -0.15 -0.89 16 24 C -0.12 -0.76 5.83 -26.71 -0.16 -0.91 16 25 C -0.12 -0.81 5.92 -26.75 -0.16 -0.97 16 26 C -0.12 -1.08 5.10 -26.98 -0.14 -1.22 16 27 C 0.12 1.19 2.72 -67.29 -0.18 1.00 16 28 H 0.11 1.28 7.13 -51.93 -0.37 0.91 16 29 C -0.10 -2.11 9.92 -39.83 -0.40 -2.51 16 30 C -0.18 -4.08 9.74 -39.25 -0.38 -4.46 16 31 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 32 H 0.10 2.40 4.75 -52.49 -0.25 2.15 16 33 H 0.10 1.69 6.27 -52.49 -0.33 1.36 16 34 H 0.08 1.07 7.18 -51.93 -0.37 0.69 16 35 H 0.08 1.09 7.52 -51.93 -0.39 0.70 16 36 H 0.10 0.68 6.07 -51.93 -0.32 0.36 16 37 H 0.08 0.58 7.35 -51.93 -0.38 0.20 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.56 8.14 -51.94 -0.42 0.13 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.52 7.83 -51.93 -0.41 0.11 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.63 6.72 -51.93 -0.35 0.28 16 48 H 0.11 2.13 8.06 -52.49 -0.42 1.70 16 49 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -31.27 378.40 -9.73 -41.00 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.41 Total: 2.91 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -3.25 Total: -17.87 kcal Atomic # 7 Polarization: -28.33 SS G_CDS: 0.33 Total: -28.00 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.94 Total: -19.99 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.17 Total: 16.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.27 -9.73 -41.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053310036.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.658 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds