Wall clock time and date at job start Tue Mar 31 2020 07:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48499 * 109.47035 * 239.99978 * 3 2 1 5 5 H 1.48497 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46720 * 120.00124 * 3 2 1 7 7 C 1.39895 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99993 * 185.66664 * 7 2 1 9 9 C 1.41215 * 120.00211 * 5.67358 * 7 2 1 10 10 C 1.40837 * 120.17770 * 34.07269 * 9 7 2 11 11 C 1.36437 * 119.81009 * 180.02562 * 10 9 7 12 12 C 1.39320 * 120.18259 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.81224 * 179.97438 * 12 11 10 14 14 C 1.42904 * 116.99641 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47222 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00053 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00307 * 180.02562 * 15 14 13 18 18 C 1.47387 * 121.36497 * 354.32091 * 17 15 14 19 19 C 1.53171 * 108.87852 * 129.86145 * 18 17 15 20 20 O 1.43183 * 109.77028 * 51.05821 * 19 18 17 21 21 C 1.42563 * 113.51487 * 298.35651 * 20 19 18 22 22 H 1.08998 * 108.88506 * 304.55131 * 21 20 19 23 23 C 1.52692 * 111.41121 * 183.91872 * 21 20 19 24 24 C 1.53206 * 108.88633 * 178.53712 * 23 21 20 25 25 C 1.52883 * 109.98534 * 59.39019 * 24 23 21 26 26 C 1.53200 * 109.98859 * 301.26218 * 25 24 23 27 27 C 1.46839 * 121.36809 * 174.35086 * 17 15 14 28 28 H 1.09000 * 109.57785 * 112.33298 * 27 17 15 29 29 C 1.39310 * 120.36631 * 0.25648 * 12 11 10 30 30 C 1.36431 * 120.18366 * 359.48494 * 29 12 11 31 31 H 0.97001 * 119.99855 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.09628 * 0.04037 * 10 9 7 33 33 H 1.07999 * 119.90728 * 179.97438 * 11 10 9 34 34 H 1.09009 * 109.46855 * 60.00548 * 14 13 12 35 35 H 1.08999 * 109.47562 * 300.00530 * 14 13 12 36 36 H 1.09004 * 109.56722 * 10.04473 * 18 17 15 37 37 H 1.09000 * 109.56888 * 249.68351 * 18 17 15 38 38 H 1.09005 * 109.41043 * 171.12631 * 19 18 17 39 39 H 1.08994 * 109.41368 * 290.98497 * 19 18 17 40 40 H 1.09001 * 109.56718 * 58.71974 * 23 21 20 41 41 H 1.08993 * 109.66540 * 298.42249 * 23 21 20 42 42 H 1.09002 * 109.38574 * 299.22933 * 24 23 21 43 43 H 1.09004 * 109.37979 * 179.54631 * 24 23 21 44 44 H 1.09008 * 109.37849 * 181.11188 * 25 24 23 45 45 H 1.08994 * 109.38555 * 61.42728 * 25 24 23 46 46 H 1.09001 * 109.57221 * 299.63913 * 26 25 24 47 47 H 1.09001 * 109.56628 * 179.27380 * 26 25 24 48 48 H 1.08001 * 119.90471 * 179.72050 * 29 12 11 49 49 H 1.08006 * 120.09828 * 180.25450 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0966 1.6962 1.2126 7 6 2.0082 -1.2116 -0.0005 8 1 3.0842 -1.2140 0.0918 9 6 1.3072 -2.4315 -0.1220 10 6 0.1430 -2.5035 -0.9112 11 6 -0.5286 -3.6858 -1.0229 12 6 -0.0655 -4.8199 -0.3593 13 8 -0.7395 -5.9916 -0.4752 14 6 -0.2111 -7.1165 0.2302 15 6 -1.0856 -8.3191 -0.0148 16 8 -2.0646 -8.2226 -0.7241 17 7 -0.7797 -9.5019 0.5543 18 6 0.4666 -9.6857 1.3193 19 6 0.1288 -10.3200 2.6720 20 8 -0.6826 -11.4827 2.4726 21 6 -1.9331 -11.2034 1.8476 22 1 -2.4594 -10.4494 2.4329 23 6 -2.7978 -12.4577 1.7456 24 6 -4.1370 -12.0857 1.1011 25 6 -3.9018 -11.4980 -0.2905 26 6 -3.0069 -10.2585 -0.1911 27 6 -1.6741 -10.6606 0.4370 28 1 -1.1993 -11.4281 -0.1742 29 6 1.0826 -4.7560 0.4272 30 6 1.7688 -3.5827 0.5451 31 1 -0.4850 0.8401 0.0004 32 1 -0.2169 -1.6254 -1.4268 33 1 -1.4218 -3.7427 -1.6274 34 1 -0.1866 -6.8970 1.2977 35 1 0.7995 -7.3239 -0.1214 36 1 0.9432 -8.7184 1.4785 37 1 1.1407 -10.3405 0.7672 38 1 1.0508 -10.6043 3.1791 39 1 -0.4142 -9.6000 3.2842 40 1 -2.9725 -12.8627 2.7424 41 1 -2.2919 -13.2031 1.1321 42 1 -4.6460 -11.3497 1.7234 43 1 -4.7580 -12.9776 1.0169 44 1 -4.8587 -11.2188 -0.7317 45 1 -3.4182 -12.2438 -0.9213 46 1 -3.4920 -9.5069 0.4316 47 1 -2.8332 -9.8528 -1.1878 48 1 1.4325 -5.6386 0.9419 49 1 2.6611 -3.5357 1.1519 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053310039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:29 Heat of formation + Delta-G solvation = -89.123858 kcal Electronic energy + Delta-G solvation = -30324.722485 eV Core-core repulsion = 26217.029732 eV Total energy + Delta-G solvation = -4107.692753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.15882 -39.22935 -38.28785 -36.99336 -36.30619 -35.03931 -33.28217 -31.19535 -30.72462 -29.97902 -29.19066 -28.71062 -27.15228 -24.75743 -23.97533 -23.22209 -22.12514 -21.13892 -20.71145 -20.41512 -19.26002 -17.62091 -17.26422 -17.19129 -16.47209 -16.24305 -16.13738 -15.49201 -15.37348 -15.15165 -14.89205 -14.73539 -13.99838 -13.96046 -13.81909 -13.76104 -13.30098 -13.18373 -12.95352 -12.58639 -12.52004 -12.22486 -12.04039 -11.79690 -11.72901 -11.65708 -11.46959 -11.31652 -11.16148 -11.07340 -10.97748 -10.82133 -10.73878 -10.69790 -10.44023 -9.99511 -9.84745 -9.39864 -9.13461 -9.06769 -8.71746 -7.70552 -6.97040 -6.65383 -4.31970 2.43598 2.50996 2.76385 2.88428 3.09191 3.11747 3.18039 3.26674 3.89742 3.97907 4.24590 4.42935 4.49487 4.57181 4.65872 4.66148 4.70441 4.83945 4.88669 4.91673 4.91859 5.14167 5.16954 5.22209 5.26325 5.29810 5.38270 5.47290 5.55543 5.58950 5.62695 5.71082 5.83370 5.88954 5.94681 6.07715 6.14378 6.15057 6.43189 6.65019 6.76597 6.91217 7.04394 7.09909 7.18744 7.39146 7.52133 7.69333 7.98797 8.07709 8.17679 8.36869 8.61127 8.90014 8.94471 10.31062 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025782 B = 0.002048 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.777002 B =13666.019469 C =14363.449365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.071 3.929 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.468 4.468 8 H 0.075 0.925 9 C 0.088 3.912 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.001 4.001 13 O -0.302 6.302 14 C 0.051 3.949 15 C 0.523 3.477 16 O -0.505 6.505 17 N -0.619 5.619 18 C 0.070 3.930 19 C 0.048 3.952 20 O -0.376 6.376 21 C 0.079 3.921 22 H 0.062 0.938 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.116 4.116 27 C 0.123 3.877 28 H 0.080 0.920 29 C -0.175 4.175 30 C -0.187 4.187 31 H 0.279 0.721 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 -22.141 4.477 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.499 4.499 8 H 0.093 0.907 9 C 0.086 3.914 10 C -0.137 4.137 11 C -0.139 4.139 12 C -0.044 4.044 13 O -0.217 6.217 14 C -0.028 4.028 15 C 0.311 3.689 16 O -0.379 6.379 17 N -0.356 5.356 18 C -0.053 4.053 19 C -0.030 4.030 20 O -0.294 6.294 21 C 0.020 3.980 22 H 0.080 0.920 23 C -0.145 4.145 24 C -0.157 4.157 25 C -0.164 4.164 26 C -0.154 4.154 27 C 0.020 3.980 28 H 0.097 0.903 29 C -0.194 4.194 30 C -0.207 4.207 31 H 0.090 0.910 32 H 0.144 0.856 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.121 0.879 48 H 0.111 0.889 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.606 -22.082 4.021 22.733 hybrid contribution 0.724 1.037 0.382 1.321 sum -2.883 -21.045 4.403 21.693 Atomic orbital electron populations 1.69763 1.07241 1.28992 1.38113 1.25835 0.94892 1.01005 0.92632 0.86306 0.79854 0.80386 0.79711 1.19045 1.20454 1.19214 1.19373 0.94761 0.90116 1.45691 0.90716 1.17624 0.92210 0.92241 0.89319 1.21031 0.97628 0.95354 0.99699 1.19884 1.00714 0.91194 1.02149 1.18686 0.95554 0.84762 1.05424 1.85945 1.51435 1.15840 1.68507 1.22160 0.96619 0.86067 0.97991 1.20392 0.85860 0.83221 0.79382 1.90704 1.27571 1.83615 1.35976 1.48111 1.22186 1.10774 1.54549 1.22517 0.86559 1.02976 0.93249 1.22988 0.96200 0.88355 0.95433 1.87930 1.29511 1.31750 1.80240 1.22479 0.85173 0.98021 0.92331 0.92041 1.21447 0.94934 0.96041 1.02032 1.21557 0.96146 1.01183 0.96773 1.21716 1.00416 0.97670 0.96638 1.22064 0.92367 0.96692 1.04239 1.21896 0.91896 0.87331 0.96881 0.90258 1.20384 0.97416 0.98287 1.03272 1.20670 1.02135 0.93714 1.04194 0.91005 0.85563 0.88152 0.90244 0.90219 0.88439 0.90054 0.87259 0.92348 0.90752 0.90856 0.91705 0.91188 0.91243 0.91926 0.91260 0.87928 0.88882 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.26 10.95 55.55 0.61 -20.65 16 2 C 0.07 1.80 5.31 -17.34 -0.09 1.71 16 3 Si 0.91 18.85 29.56 -169.99 -5.03 13.82 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.47 -12.31 9.03 -37.83 -0.34 -12.66 16 8 H 0.07 1.88 7.85 -52.49 -0.41 1.46 16 9 C 0.09 2.32 5.51 -106.80 -0.59 1.73 16 10 C -0.12 -3.06 8.57 -39.25 -0.34 -3.39 16 11 C -0.12 -2.93 9.92 -39.83 -0.40 -3.33 16 12 C 0.00 -0.03 6.71 -38.78 -0.26 -0.29 16 13 O -0.30 -6.38 9.65 -38.63 -0.37 -6.75 16 14 C 0.05 0.80 3.60 36.01 0.13 0.93 16 15 C 0.52 7.90 7.66 -10.99 -0.08 7.82 16 16 O -0.50 -9.24 12.47 -14.36 -0.18 -9.42 16 17 N -0.62 -7.17 3.02 -165.00 -0.50 -7.67 16 18 C 0.07 0.59 6.54 -3.47 -0.02 0.56 16 19 C 0.05 0.37 6.95 37.25 0.26 0.63 16 20 O -0.38 -3.68 10.51 -35.23 -0.37 -4.05 16 21 C 0.08 0.75 2.49 -26.71 -0.07 0.68 16 22 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 23 C -0.11 -0.81 5.69 -26.78 -0.15 -0.97 16 24 C -0.12 -0.86 5.91 -26.68 -0.16 -1.02 16 25 C -0.13 -1.07 5.90 -26.69 -0.16 -1.23 16 26 C -0.12 -1.34 3.73 -26.77 -0.10 -1.44 16 27 C 0.12 1.31 2.83 -67.71 -0.19 1.12 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 C -0.17 -3.77 8.96 -39.83 -0.36 -4.13 16 30 C -0.19 -4.45 9.74 -39.25 -0.38 -4.84 16 31 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 32 H 0.13 3.37 6.45 -52.49 -0.34 3.03 16 33 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 34 H 0.08 1.11 7.39 -51.92 -0.38 0.72 16 35 H 0.08 1.09 7.34 -51.93 -0.38 0.71 16 36 H 0.10 0.71 6.10 -51.93 -0.32 0.39 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.92 7.61 -51.93 -0.40 0.52 16 47 H 0.10 1.44 6.13 -51.93 -0.32 1.12 16 48 H 0.09 1.64 6.27 -52.49 -0.33 1.31 16 49 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -30.79 381.62 -10.89 -41.68 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.50 Total: 5.38 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -3.30 Total: -18.10 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.11 Total: -28.32 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.92 Total: -20.22 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.79 -10.89 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053310039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.445 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds