Wall clock time and date at job start Tue Mar 31 2020 07:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48499 * 109.47035 * 239.99978 * 3 2 1 5 5 H 1.48497 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46720 * 120.00124 * 3 2 1 7 7 C 1.39895 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99993 * 185.66664 * 7 2 1 9 9 C 1.41215 * 120.00211 * 5.67358 * 7 2 1 10 10 C 1.40837 * 120.17770 * 34.07269 * 9 7 2 11 11 C 1.36437 * 119.81009 * 180.02562 * 10 9 7 12 12 C 1.39320 * 120.18259 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.81224 * 179.97438 * 12 11 10 14 14 C 1.42904 * 116.99641 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47222 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00053 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00307 * 180.02562 * 15 14 13 18 18 C 1.47387 * 121.36497 * 354.32091 * 17 15 14 19 19 C 1.53171 * 108.87852 * 129.86145 * 18 17 15 20 20 O 1.43183 * 109.77028 * 51.05821 * 19 18 17 21 21 C 1.42563 * 113.51487 * 298.35651 * 20 19 18 22 22 H 1.08998 * 108.88506 * 304.55131 * 21 20 19 23 23 C 1.52692 * 111.41121 * 183.91872 * 21 20 19 24 24 C 1.53206 * 108.88633 * 178.53712 * 23 21 20 25 25 C 1.52883 * 109.98534 * 59.39019 * 24 23 21 26 26 C 1.53200 * 109.98859 * 301.26218 * 25 24 23 27 27 C 1.46839 * 121.36809 * 174.35086 * 17 15 14 28 28 H 1.09000 * 109.57785 * 112.33298 * 27 17 15 29 29 C 1.39310 * 120.36631 * 0.25648 * 12 11 10 30 30 C 1.36431 * 120.18366 * 359.48494 * 29 12 11 31 31 H 0.97001 * 119.99855 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.09628 * 0.04037 * 10 9 7 33 33 H 1.07999 * 119.90728 * 179.97438 * 11 10 9 34 34 H 1.09009 * 109.46855 * 60.00548 * 14 13 12 35 35 H 1.08999 * 109.47562 * 300.00530 * 14 13 12 36 36 H 1.09004 * 109.56722 * 10.04473 * 18 17 15 37 37 H 1.09000 * 109.56888 * 249.68351 * 18 17 15 38 38 H 1.09005 * 109.41043 * 171.12631 * 19 18 17 39 39 H 1.08994 * 109.41368 * 290.98497 * 19 18 17 40 40 H 1.09001 * 109.56718 * 58.71974 * 23 21 20 41 41 H 1.08993 * 109.66540 * 298.42249 * 23 21 20 42 42 H 1.09002 * 109.38574 * 299.22933 * 24 23 21 43 43 H 1.09004 * 109.37979 * 179.54631 * 24 23 21 44 44 H 1.09008 * 109.37849 * 181.11188 * 25 24 23 45 45 H 1.08994 * 109.38555 * 61.42728 * 25 24 23 46 46 H 1.09001 * 109.57221 * 299.63913 * 26 25 24 47 47 H 1.09001 * 109.56628 * 179.27380 * 26 25 24 48 48 H 1.08001 * 119.90471 * 179.72050 * 29 12 11 49 49 H 1.08006 * 120.09828 * 180.25450 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0966 1.6962 1.2126 7 6 2.0082 -1.2116 -0.0005 8 1 3.0842 -1.2140 0.0918 9 6 1.3072 -2.4315 -0.1220 10 6 0.1430 -2.5035 -0.9112 11 6 -0.5286 -3.6858 -1.0229 12 6 -0.0655 -4.8199 -0.3593 13 8 -0.7395 -5.9916 -0.4752 14 6 -0.2111 -7.1165 0.2302 15 6 -1.0856 -8.3191 -0.0148 16 8 -2.0646 -8.2226 -0.7241 17 7 -0.7797 -9.5019 0.5543 18 6 0.4666 -9.6857 1.3193 19 6 0.1288 -10.3200 2.6720 20 8 -0.6826 -11.4827 2.4726 21 6 -1.9331 -11.2034 1.8476 22 1 -2.4594 -10.4494 2.4329 23 6 -2.7978 -12.4577 1.7456 24 6 -4.1370 -12.0857 1.1011 25 6 -3.9018 -11.4980 -0.2905 26 6 -3.0069 -10.2585 -0.1911 27 6 -1.6741 -10.6606 0.4370 28 1 -1.1993 -11.4281 -0.1742 29 6 1.0826 -4.7560 0.4272 30 6 1.7688 -3.5827 0.5451 31 1 -0.4850 0.8401 0.0004 32 1 -0.2169 -1.6254 -1.4268 33 1 -1.4218 -3.7427 -1.6274 34 1 -0.1866 -6.8970 1.2977 35 1 0.7995 -7.3239 -0.1214 36 1 0.9432 -8.7184 1.4785 37 1 1.1407 -10.3405 0.7672 38 1 1.0508 -10.6043 3.1791 39 1 -0.4142 -9.6000 3.2842 40 1 -2.9725 -12.8627 2.7424 41 1 -2.2919 -13.2031 1.1321 42 1 -4.6460 -11.3497 1.7234 43 1 -4.7580 -12.9776 1.0169 44 1 -4.8587 -11.2188 -0.7317 45 1 -3.4182 -12.2438 -0.9213 46 1 -3.4920 -9.5069 0.4316 47 1 -2.8332 -9.8528 -1.1878 48 1 1.4325 -5.6386 0.9419 49 1 2.6611 -3.5357 1.1519 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053310039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:28 Heat of formation + Delta-G solvation = -105.648632 kcal Electronic energy + Delta-G solvation = -30325.439053 eV Core-core repulsion = 26217.029732 eV Total energy + Delta-G solvation = -4108.409321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.09606 -40.67038 -39.56184 -38.08571 -37.64462 -35.99962 -35.14204 -32.16805 -31.64403 -31.41665 -30.94504 -29.87825 -28.21839 -26.57301 -24.68223 -24.14991 -23.20887 -22.66219 -22.40098 -21.14898 -20.35187 -19.25977 -18.91460 -18.13377 -17.53462 -17.32851 -17.19043 -16.95636 -16.41713 -16.14655 -16.06011 -15.81223 -15.72585 -15.05805 -14.84090 -14.64966 -14.51433 -14.30386 -14.15805 -14.05399 -13.80907 -13.59804 -13.32524 -13.24458 -12.98004 -12.79995 -12.68672 -12.47064 -12.41184 -12.35827 -12.05596 -11.85548 -11.72243 -11.63597 -11.54039 -11.44782 -11.23479 -11.21050 -10.96398 -10.17151 -9.62139 -9.58124 -8.83968 -8.51981 -6.27825 0.92764 1.00847 1.35203 1.40922 1.43081 1.52339 1.52499 2.25340 2.60497 2.64808 2.78528 3.32165 3.51256 3.65242 3.79089 3.83460 3.86038 3.97113 4.05827 4.07949 4.13804 4.20626 4.21289 4.28086 4.29451 4.33967 4.39064 4.43164 4.68626 4.74653 4.80508 4.83876 4.87827 4.92921 5.04896 5.08789 5.12648 5.17555 5.22104 5.27214 5.30760 5.39772 5.49874 5.53934 5.63674 5.82845 6.07011 6.07914 6.11579 6.25126 6.54023 6.76069 6.97991 6.98524 7.06111 8.45960 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025782 B = 0.002048 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.777002 B =13666.019469 C =14363.449365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.026 3.974 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.078 0.922 9 C 0.053 3.947 10 C -0.137 4.137 11 C -0.140 4.140 12 C 0.008 3.992 13 O -0.325 6.325 14 C 0.043 3.957 15 C 0.520 3.480 16 O -0.549 6.549 17 N -0.612 5.612 18 C 0.062 3.938 19 C 0.045 3.955 20 O -0.384 6.384 21 C 0.084 3.916 22 H 0.049 0.951 23 C -0.103 4.103 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.110 4.110 27 C 0.120 3.880 28 H 0.087 0.913 29 C -0.166 4.166 30 C -0.191 4.191 31 H 0.283 0.717 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.139 0.861 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.142 0.858 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -24.349 6.115 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.185 4.185 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.096 0.904 9 C 0.051 3.949 10 C -0.156 4.156 11 C -0.159 4.159 12 C -0.035 4.035 13 O -0.240 6.240 14 C -0.036 4.036 15 C 0.308 3.692 16 O -0.427 6.427 17 N -0.347 5.347 18 C -0.059 4.059 19 C -0.032 4.032 20 O -0.303 6.303 21 C 0.025 3.975 22 H 0.067 0.933 23 C -0.141 4.141 24 C -0.152 4.152 25 C -0.160 4.160 26 C -0.148 4.148 27 C 0.017 3.983 28 H 0.105 0.895 29 C -0.184 4.184 30 C -0.210 4.210 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.156 0.844 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.159 0.841 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.934 -24.346 5.688 25.076 hybrid contribution 0.184 1.508 -0.106 1.523 sum -1.750 -22.837 5.583 23.575 Atomic orbital electron populations 1.69860 1.08781 1.30056 1.39053 1.26727 0.95655 1.04409 0.91710 0.85199 0.78467 0.75728 0.79938 1.18522 1.19835 1.18365 1.19654 0.95092 0.91066 1.47332 0.90364 1.17990 0.92859 0.93649 0.90386 1.20893 0.98618 0.95368 1.00769 1.20006 1.01020 0.91806 1.03027 1.18733 0.95531 0.85009 1.04260 1.85913 1.52093 1.16462 1.69544 1.22535 0.97819 0.84371 0.98845 1.20421 0.85312 0.84099 0.79335 1.90715 1.29349 1.84467 1.38172 1.48182 1.23225 1.09776 1.53564 1.22852 0.85263 1.04406 0.93399 1.23187 0.97095 0.87853 0.95076 1.87929 1.29510 1.32755 1.80074 1.22439 0.85492 0.98592 0.90959 0.93310 1.21464 0.94576 0.95225 1.02819 1.21535 0.96392 1.01783 0.95475 1.21683 0.99792 0.96518 0.97998 1.21865 0.93561 0.97370 1.01965 1.22020 0.91269 0.87011 0.97995 0.89491 1.20754 0.96126 0.99257 1.02293 1.20959 1.02726 0.93605 1.03715 0.90637 0.87599 0.88034 0.87922 0.87470 0.86870 0.88421 0.84353 0.92600 0.89731 0.90056 0.92297 0.89066 0.91279 0.90781 0.93805 0.90945 0.84083 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.85 10.95 21.82 0.24 -45.61 16 2 C 0.03 1.35 5.31 85.24 0.45 1.80 16 3 Si 0.99 38.92 29.56 68.60 2.03 40.94 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.50 -26.82 9.03 23.40 0.21 -26.60 16 8 H 0.08 3.97 7.85 -2.91 -0.02 3.94 16 9 C 0.05 2.85 5.51 -21.28 -0.12 2.73 16 10 C -0.14 -7.41 8.57 22.49 0.19 -7.22 16 11 C -0.14 -7.00 9.92 22.11 0.22 -6.79 16 12 C 0.01 0.38 6.71 22.79 0.15 0.53 16 13 O -0.32 -13.48 9.65 -70.89 -0.68 -14.16 16 14 C 0.04 1.23 3.60 71.24 0.26 1.49 16 15 C 0.52 15.33 7.66 87.66 0.67 16.01 16 16 O -0.55 -20.75 12.47 15.99 0.20 -20.55 16 17 N -0.61 -13.21 3.02 -794.31 -2.40 -15.60 16 18 C 0.06 0.84 6.54 86.27 0.56 1.40 16 19 C 0.04 0.55 6.95 72.04 0.50 1.05 16 20 O -0.38 -6.45 10.51 -148.98 -1.57 -8.01 16 21 C 0.08 1.45 2.49 30.61 0.08 1.53 16 22 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 23 C -0.10 -1.33 5.69 30.56 0.17 -1.16 16 24 C -0.11 -1.45 5.91 30.62 0.18 -1.27 16 25 C -0.12 -1.98 5.90 30.62 0.18 -1.80 16 26 C -0.11 -2.58 3.73 30.57 0.11 -2.47 16 27 C 0.12 2.43 2.83 44.95 0.13 2.56 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 C -0.17 -6.77 8.96 22.11 0.20 -6.57 16 30 C -0.19 -8.85 9.74 22.48 0.22 -8.63 16 31 H 0.28 14.04 8.30 -92.71 -0.77 13.27 16 32 H 0.11 6.03 6.45 -2.91 -0.02 6.01 16 33 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 34 H 0.10 2.50 7.39 -2.38 -0.02 2.48 16 35 H 0.11 2.52 7.34 -2.39 -0.02 2.50 16 36 H 0.11 1.16 6.10 -2.38 -0.01 1.15 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.14 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.06 0.72 8.13 -2.39 -0.02 0.71 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.81 8.14 -2.38 -0.02 0.80 16 44 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.04 1.23 7.61 -2.39 -0.02 1.21 16 47 H 0.07 2.15 6.13 -2.39 -0.01 2.14 16 48 H 0.14 4.31 6.27 -2.91 -0.02 4.29 16 49 H 0.12 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -70.17 381.62 3.14 -67.03 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.95 Total: 29.38 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 4.37 Total: -33.41 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -2.16 Total: -61.21 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -2.05 Total: -42.73 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.94 kcal Total: -70.17 3.14 -67.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053310039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.622 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds