Wall clock time and date at job start Tue Mar 31 2020 06:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39723 * 125.77861 * 2 1 4 4 C 1.36166 * 107.86028 * 180.17275 * 3 2 1 5 5 N 1.39336 * 126.26363 * 179.84867 * 4 3 2 6 6 C 1.34770 * 120.00334 * 359.68788 * 5 4 3 7 7 O 1.21721 * 120.00169 * 359.97438 * 6 5 4 8 8 C 1.46378 * 120.00281 * 180.02562 * 6 5 4 9 9 C 1.34830 * 120.00323 * 179.97438 * 8 6 5 10 10 C 1.47203 * 120.00135 * 179.97438 * 9 8 6 11 11 C 1.39865 * 120.16219 * 179.97438 * 10 9 8 12 12 C 1.37872 * 119.85172 * 179.97438 * 11 10 9 13 13 C 1.38404 * 120.18633 * 359.97438 * 12 11 10 14 14 C 1.38500 * 120.33392 * 0.04353 * 13 12 11 15 15 Cl 1.73601 * 119.93013 * 179.97438 * 14 13 12 16 16 C 1.38035 * 120.14147 * 359.95442 * 14 13 12 17 17 N 1.35817 * 107.46941 * 359.58243 * 4 3 2 18 18 C 1.46497 * 126.09616 * 180.24586 * 17 4 3 19 19 C 1.50703 * 109.47044 * 89.99682 * 18 17 4 20 20 H 1.07994 * 120.00147 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99702 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00015 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00239 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47527 * 89.99692 * 23 21 19 25 25 H 1.48506 * 109.47346 * 209.99896 * 23 21 19 26 26 H 1.48501 * 109.47123 * 329.99338 * 23 21 19 27 27 N 1.30837 * 125.77724 * 179.70468 * 2 1 3 28 28 H 1.09006 * 109.47003 * 270.27282 * 1 2 3 29 29 H 1.09000 * 109.47639 * 30.27001 * 1 2 3 30 30 H 1.08997 * 109.47215 * 150.27558 * 1 2 3 31 31 H 1.08003 * 126.07253 * 0.02562 * 3 2 1 32 32 H 0.97005 * 119.99861 * 179.68321 * 5 4 3 33 33 H 1.07999 * 119.99886 * 359.97438 * 8 6 5 34 34 H 1.08004 * 120.00254 * 359.97438 * 9 8 6 35 35 H 1.07998 * 120.07895 * 359.69889 * 11 10 9 36 36 H 1.08000 * 119.90878 * 179.97438 * 12 11 10 37 37 H 1.08003 * 119.83454 * 180.02562 * 13 12 11 38 38 H 1.07995 * 120.09249 * 180.02562 * 16 14 13 39 39 H 1.09000 * 109.47096 * 209.99716 * 18 17 4 40 40 H 1.09000 * 109.46763 * 330.00259 * 18 17 4 41 41 H 0.97004 * 120.00226 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3238 1.1335 0.0000 4 6 3.6194 0.7146 -0.0039 5 7 4.7493 1.5300 -0.0082 6 6 4.6127 2.8708 -0.0151 7 8 3.5024 3.3695 -0.0181 8 6 5.7997 3.7274 -0.0202 9 6 5.6631 5.0687 -0.0276 10 6 6.8567 5.9301 -0.0322 11 6 6.7189 7.3220 -0.0404 12 6 7.8413 8.1227 -0.0441 13 6 9.1026 7.5530 -0.0391 14 6 9.2480 6.1757 -0.0313 15 17 10.8351 5.4723 -0.0258 16 6 8.1337 5.3611 -0.0275 17 7 3.6088 -0.6435 0.0032 18 6 4.7858 -1.5158 0.0072 19 6 5.1900 -1.8074 1.4295 20 1 4.6263 -1.3856 2.2484 21 6 6.2788 -2.6137 1.6851 22 7 6.6313 -2.8686 2.9262 23 14 7.2534 -3.3439 0.2687 24 1 8.3457 -2.4129 -0.1126 25 1 7.8352 -4.6447 0.6867 26 1 6.3542 -3.5548 -0.8941 27 7 2.2718 -1.0615 0.0055 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8875 -0.5180 30 1 -0.3633 -0.8924 -0.5095 31 1 1.9874 2.1598 0.0004 32 1 5.6342 1.1327 -0.0061 33 1 6.7849 3.2850 -0.0180 34 1 4.6778 5.5113 -0.0303 35 1 5.7356 7.7685 -0.0484 36 1 7.7360 9.1975 -0.0509 37 1 9.9780 8.1856 -0.0416 38 1 8.2480 4.2872 -0.0210 39 1 4.5475 -2.4498 -0.5016 40 1 5.6074 -1.0197 -0.5095 41 1 7.3976 -3.4355 3.1061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057996810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:20 Heat of formation + Delta-G solvation = 78.756913 kcal Electronic energy + Delta-G solvation = -25812.842343 eV Core-core repulsion = 21913.765173 eV Total energy + Delta-G solvation = -3899.077170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.91384 -39.84411 -39.13301 -36.86067 -34.86667 -34.37319 -33.75900 -32.16574 -31.23164 -30.35472 -29.46019 -28.24791 -26.31853 -24.90182 -23.20896 -22.60089 -21.94951 -20.30197 -19.73540 -19.03232 -17.80900 -17.21283 -16.98979 -16.48433 -15.89909 -15.69752 -15.22359 -14.92997 -14.46836 -14.21641 -14.19995 -14.00022 -13.90667 -13.83328 -13.14794 -12.73492 -12.62324 -12.53920 -12.35527 -12.10928 -12.07403 -11.89930 -11.83713 -11.65263 -11.24666 -11.16462 -10.84860 -10.65537 -10.48132 -10.24365 -10.04287 -9.77203 -9.60262 -9.26777 -8.87088 -8.71140 -7.95555 -7.49886 -6.34115 -4.38710 0.10123 0.76456 1.55567 1.74244 2.52426 2.74987 3.06302 3.16628 3.16856 3.18140 3.37701 3.64703 3.66473 4.13559 4.21330 4.29662 4.55220 4.67801 4.79194 4.85251 4.91836 4.96578 5.15164 5.28504 5.42727 5.55827 5.61140 5.74842 5.81252 5.94928 6.01192 6.03381 6.12029 6.17155 6.23145 6.30353 6.31595 6.36213 6.63212 6.73876 7.19310 7.42960 7.52621 7.74223 8.15199 8.28356 8.55196 8.72237 9.20422 10.78076 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.008664 B = 0.002915 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.096862 B = 9603.602118 C =12446.951613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 C -0.289 4.289 4 C 0.303 3.697 5 N -0.633 5.633 6 C 0.553 3.447 7 O -0.518 6.518 8 C -0.191 4.191 9 C -0.026 4.026 10 C -0.056 4.056 11 C -0.092 4.092 12 C -0.109 4.109 13 C -0.104 4.104 14 C -0.036 4.036 15 Cl -0.066 7.066 16 C -0.095 4.095 17 N -0.346 5.346 18 C 0.230 3.770 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.080 3.920 22 N -0.883 5.883 23 Si 0.871 3.129 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.281 5.281 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.164 0.836 32 H 0.416 0.584 33 H 0.134 0.866 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.055 0.945 40 H 0.035 0.965 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 21.699 -8.154 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C -0.321 4.321 4 C 0.081 3.919 5 N -0.279 5.279 6 C 0.342 3.658 7 O -0.394 6.394 8 C -0.212 4.212 9 C -0.045 4.045 10 C -0.056 4.056 11 C -0.110 4.110 12 C -0.128 4.128 13 C -0.123 4.123 14 C -0.062 4.062 15 Cl -0.037 7.037 16 C -0.114 4.114 17 N -0.131 5.131 18 C 0.111 3.889 19 C -0.584 4.584 20 H 0.100 0.900 21 C -0.124 4.124 22 N -0.519 5.519 23 Si 0.697 3.303 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.105 5.105 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.181 0.819 32 H 0.253 0.747 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.591 20.525 -8.028 22.330 hybrid contribution 1.600 -0.095 -0.415 1.656 sum 5.191 20.430 -8.443 22.708 Atomic orbital electron populations 1.20035 0.87409 1.02376 1.02327 1.22047 0.96608 0.90956 1.01555 1.21292 0.88972 1.00528 1.21263 1.18009 0.88095 0.83035 1.02752 1.42612 1.08264 1.05604 1.71393 1.18136 0.89767 0.81034 0.76840 1.90750 1.26428 1.73910 1.48350 1.22858 0.98060 0.94367 1.05894 1.22289 0.97543 0.92707 0.91987 1.18946 0.92119 0.93448 1.01136 1.21507 0.99629 0.92294 0.97593 1.21083 0.91469 1.00447 0.99752 1.21226 0.98673 0.92782 0.99572 1.20851 0.86632 0.93469 1.05262 1.98398 1.24078 1.84305 1.96894 1.21402 0.90454 1.00674 0.98860 1.49052 1.06129 1.01905 1.56025 1.19932 0.79274 0.90008 0.99667 1.21198 1.14311 1.32608 0.90319 0.90049 1.24822 0.96617 0.95213 0.95784 1.69872 1.26808 1.36669 1.18549 0.86929 0.80780 0.79788 0.82827 1.19634 1.20333 1.18741 1.77343 0.85823 1.21788 1.25593 0.91145 0.91063 0.91503 0.81886 0.74709 0.84801 0.83862 0.84589 0.84629 0.84768 0.84142 0.92730 0.94757 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.00 0.38 -0.54 16 2 C 0.05 1.07 7.20 -82.46 -0.59 0.47 16 3 C -0.29 -5.84 9.58 -39.77 -0.38 -6.22 16 4 C 0.30 6.30 7.68 -152.77 -1.17 5.12 16 5 N -0.63 -10.84 5.41 -12.62 -0.07 -10.91 16 6 C 0.55 8.50 7.70 -12.99 -0.10 8.40 16 7 O -0.52 -9.12 13.35 5.17 0.07 -9.05 16 8 C -0.19 -2.15 9.41 -37.52 -0.35 -2.50 16 9 C -0.03 -0.25 9.46 -37.15 -0.35 -0.60 16 10 C -0.06 -0.49 5.87 -105.06 -0.62 -1.11 16 11 C -0.09 -0.65 9.80 -39.11 -0.38 -1.03 16 12 C -0.11 -0.68 10.03 -39.65 -0.40 -1.07 16 13 C -0.10 -0.74 9.82 -39.42 -0.39 -1.13 16 14 C -0.04 -0.31 6.31 -39.56 -0.25 -0.56 16 15 Cl -0.07 -0.60 28.95 -51.86 -1.50 -2.10 16 16 C -0.10 -0.86 9.19 -39.07 -0.36 -1.22 16 17 N -0.35 -7.95 3.62 -61.45 -0.22 -8.17 16 18 C 0.23 5.40 5.09 -5.19 -0.03 5.38 16 19 C -0.55 -14.95 9.94 -34.44 -0.34 -15.29 16 20 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 21 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 22 N -0.88 -25.69 13.96 55.43 0.77 -24.92 16 23 Si 0.87 19.53 27.47 -169.99 -4.67 14.86 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 27 N -0.28 -6.45 12.56 33.64 0.42 -6.03 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.16 3.18 5.82 -52.48 -0.31 2.88 16 32 H 0.42 6.40 7.97 -40.82 -0.33 6.08 16 33 H 0.13 1.22 6.07 -52.49 -0.32 0.91 16 34 H 0.14 1.37 7.52 -52.48 -0.39 0.97 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.14 1.19 6.17 -52.49 -0.32 0.86 16 39 H 0.05 1.30 7.20 -51.93 -0.37 0.93 16 40 H 0.03 0.72 6.95 -51.93 -0.36 0.36 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -33.38 371.73 -9.56 -42.94 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.53 Total: 7.59 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -5.44 Total: -9.81 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.91 Total: -50.03 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.67 Total: 14.86 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.38 -9.56 -42.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057996810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.700 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds