Wall clock time and date at job start Tue Mar 31 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47039 * 2 1 4 4 C 1.37105 * 119.99838 * 264.74318 * 3 2 1 5 5 H 1.08001 * 119.99806 * 146.16257 * 4 3 2 6 6 C 1.38946 * 119.99912 * 326.17348 * 4 3 2 7 7 N 1.31409 * 119.99975 * 337.67859 * 6 4 3 8 8 Si 1.86809 * 120.00057 * 157.68382 * 6 4 3 9 9 H 1.48494 * 109.47271 * 89.99413 * 8 6 4 10 10 H 1.48494 * 109.47026 * 209.99842 * 8 6 4 11 11 H 1.48501 * 109.46830 * 329.99436 * 8 6 4 12 12 C 1.34777 * 120.00325 * 84.74735 * 3 2 1 13 13 O 1.21292 * 119.99876 * 179.97438 * 12 3 2 14 14 C 1.50693 * 119.99721 * 359.97438 * 12 3 2 15 15 O 1.42896 * 109.46968 * 179.97438 * 14 12 3 16 16 C 1.35972 * 117.00082 * 180.02562 * 15 14 12 17 17 C 1.38662 * 120.05372 * 0.27129 * 16 15 14 18 18 C 1.38182 * 119.97809 * 180.29808 * 17 16 15 19 19 C 1.38341 * 120.08379 * 359.42767 * 18 17 16 20 20 Br 1.89096 * 119.94460 * 180.29676 * 19 18 17 21 21 C 1.38333 * 120.10810 * 0.28037 * 19 18 17 22 22 C 1.38331 * 120.02092 * 0.02562 * 21 19 18 23 23 F 1.35098 * 120.04500 * 179.97438 * 22 21 19 24 24 H 1.08996 * 109.47590 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47086 * 300.00338 * 1 2 3 26 26 H 1.09004 * 109.47058 * 60.00205 * 1 2 3 27 27 H 1.09005 * 109.46761 * 239.99759 * 2 1 3 28 28 H 1.08995 * 109.46548 * 119.99969 * 2 1 3 29 29 H 0.97008 * 119.99609 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47074 * 60.00176 * 14 12 3 31 31 H 1.08999 * 109.47339 * 299.99697 * 14 12 3 32 32 H 1.07999 * 120.01022 * 0.02745 * 17 16 15 33 33 H 1.07999 * 119.95397 * 179.71216 * 18 17 16 34 34 H 1.07996 * 119.99016 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3494 1.9912 -1.1824 5 1 2.1815 3.0505 -1.3090 6 6 2.9006 1.2465 -2.2178 7 7 3.5051 0.1086 -1.9593 8 14 2.7826 1.8628 -3.9774 9 1 3.9648 2.7064 -4.2867 10 1 2.7443 0.7047 -4.9060 11 1 1.5448 2.6672 -4.1380 12 6 2.1422 2.0522 1.1623 13 8 2.5470 3.1956 1.1622 14 6 1.7779 1.3818 2.4618 15 8 1.9943 2.2902 3.5434 16 6 1.7128 1.8386 4.7946 17 6 1.2437 0.5466 4.9774 18 6 0.9522 0.0913 6.2490 19 6 1.1391 0.9189 7.3417 20 35 0.7469 0.2889 9.0810 21 6 1.6126 2.2065 7.1641 22 6 1.8998 2.6690 5.8924 23 9 2.3618 3.9265 5.7183 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 3.8903 -0.4111 -2.6823 30 1 2.3993 0.4971 2.6009 31 1 0.7284 1.0886 2.4376 32 1 1.1020 -0.1021 4.1256 33 1 0.5825 -0.9135 6.3905 34 1 1.7574 2.8511 8.0184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058023086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:49 Heat of formation + Delta-G solvation = -77.792904 kcal Electronic energy + Delta-G solvation = -21736.260194 eV Core-core repulsion = 18017.071758 eV Total energy + Delta-G solvation = -3719.188436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 345.016 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.80279 -40.23107 -38.67465 -37.34620 -35.07304 -32.25558 -32.01722 -31.04811 -29.64151 -29.32086 -27.83503 -24.85932 -23.17513 -22.48865 -22.20718 -19.31833 -18.59038 -17.08638 -16.90269 -16.81204 -16.32181 -15.82554 -15.35721 -15.16546 -14.91316 -14.56099 -14.27370 -13.74083 -13.47127 -13.16304 -13.07295 -12.91824 -12.57249 -12.02329 -11.90401 -11.84101 -11.42839 -11.29559 -11.13432 -11.06297 -10.58817 -10.57833 -10.42985 -10.35999 -10.21502 -9.23722 -9.07434 -8.55783 -8.26544 -7.64472 -6.45696 -4.06847 0.80144 0.83401 1.32295 2.91029 3.10385 3.19134 3.20811 3.27349 3.68051 4.01640 4.11032 4.39888 4.63982 4.76863 4.78854 4.89668 5.15260 5.21669 5.37170 5.38703 5.50783 5.70724 5.78051 5.78587 5.85663 6.05350 6.15175 6.27785 6.34097 6.73866 7.10440 7.20862 7.49121 8.09398 8.37009 9.04205 9.24059 9.82100 10.58221 Molecular weight = 345.02amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.002425 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.997019 B =11544.420548 C =12231.618760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.090 3.910 3 N -0.433 5.433 4 C -0.308 4.308 5 H 0.095 0.905 6 C 0.037 3.963 7 N -0.867 5.867 8 Si 0.921 3.079 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.455 3.545 13 O -0.558 6.558 14 C 0.043 3.957 15 O -0.272 6.272 16 C 0.126 3.874 17 C -0.183 4.183 18 C -0.056 4.056 19 C -0.113 4.113 20 Br -0.045 7.045 21 C -0.088 4.088 22 C 0.074 3.926 23 F -0.122 7.122 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.046 0.954 29 H 0.270 0.730 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 -6.139 18.882 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.034 4.034 3 N -0.154 5.154 4 C -0.435 4.435 5 H 0.113 0.887 6 C -0.168 4.168 7 N -0.505 5.505 8 Si 0.747 3.253 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.242 3.758 13 O -0.440 6.440 14 C -0.036 4.036 15 O -0.183 6.183 16 C 0.077 3.923 17 C -0.203 4.203 18 C -0.076 4.076 19 C -0.193 4.193 20 Br 0.040 6.960 21 C -0.109 4.109 22 C 0.053 3.947 23 F -0.101 7.101 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.167 0.833 33 H 0.159 0.841 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.205 -5.706 19.317 21.392 hybrid contribution 0.088 0.130 -1.251 1.261 sum -7.117 -5.576 18.066 20.202 Atomic orbital electron populations 1.22236 0.97914 1.00625 1.01702 1.21694 0.91947 0.85284 1.04445 1.43448 1.55768 1.11931 1.04211 1.19484 1.40228 0.95731 0.88045 0.88714 1.25365 0.94211 0.96452 1.00740 1.69910 1.32200 1.15225 1.33189 0.86024 0.79227 0.78426 0.81627 1.20140 1.20694 1.19267 1.19713 0.83858 0.88502 0.83739 1.90591 1.49105 1.18199 1.86082 1.22936 1.01746 0.92667 0.86218 1.86322 1.80181 1.40593 1.11183 1.19352 0.94752 0.92567 0.85660 1.21257 1.05288 0.94912 0.98848 1.20939 0.96719 0.99564 0.90333 1.21289 1.09861 0.96317 0.91819 1.96707 1.93868 1.88187 1.17280 1.20856 0.99013 0.95297 0.95736 1.16795 1.05344 0.81127 0.91422 1.91558 1.86272 1.36274 1.95959 0.92737 0.94091 0.92032 0.86385 0.93536 0.92015 0.89711 0.90009 0.83297 0.84053 0.83225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.15 37.16 0.38 -2.34 16 2 C 0.09 1.81 5.43 -4.04 -0.02 1.78 16 3 N -0.43 -10.55 2.56 -114.82 -0.29 -10.84 16 4 C -0.31 -8.28 8.98 -14.93 -0.13 -8.42 16 5 H 0.10 2.69 7.70 -52.49 -0.40 2.29 16 6 C 0.04 0.93 4.92 -17.47 -0.09 0.85 16 7 N -0.87 -22.34 11.33 55.50 0.63 -21.71 16 8 Si 0.92 19.90 29.61 -169.99 -5.03 14.87 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 11 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 12 C 0.46 11.07 7.67 -10.99 -0.08 10.99 16 13 O -0.56 -16.09 16.32 -14.36 -0.23 -16.33 16 14 C 0.04 0.77 3.83 36.00 0.14 0.91 16 15 O -0.27 -5.25 9.53 -39.56 -0.38 -5.62 16 16 C 0.13 1.92 6.69 -39.18 -0.26 1.66 16 17 C -0.18 -2.16 9.04 -39.45 -0.36 -2.52 16 18 C -0.06 -0.56 9.78 -39.56 -0.39 -0.95 16 19 C -0.11 -1.19 6.22 -39.51 -0.25 -1.44 16 20 Br -0.05 -0.41 33.70 -68.01 -2.29 -2.70 16 21 C -0.09 -1.02 9.76 -39.51 -0.39 -1.40 16 22 C 0.07 1.08 7.31 -39.30 -0.29 0.79 16 23 F -0.12 -2.03 17.11 2.25 0.04 -1.99 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.61 6.59 -51.93 -0.34 0.27 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.12 2.64 5.34 -51.93 -0.28 2.36 16 28 H 0.05 0.81 6.66 -51.93 -0.35 0.47 16 29 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.09 1.35 6.92 -51.93 -0.36 0.99 16 31 H 0.08 1.24 6.07 -51.93 -0.32 0.92 16 32 H 0.15 1.49 6.30 -52.49 -0.33 1.16 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 317.55 15.07 4.79 4.79 Total: -1.00 -31.14 317.55 -7.71 -38.86 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.20 Total: 0.77 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.74 Total: -0.09 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.34 Total: -32.55 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.61 Total: -21.95 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.29 Total: -2.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.14 -7.71 -38.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058023086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.936 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds