Wall clock time and date at job start Tue Mar 31 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 N 1.46500 * 109.46989 * 179.97438 * 3 2 1 5 5 C 1.36826 * 120.00465 * 270.00246 * 4 3 2 6 6 H 1.07999 * 120.00286 * 133.09937 * 5 4 3 7 7 C 1.39065 * 119.99765 * 313.09852 * 5 4 3 8 8 N 1.31358 * 119.99762 * 166.96619 * 7 5 4 9 9 Si 1.86799 * 120.00281 * 346.96625 * 7 5 4 10 10 H 1.48503 * 109.47029 * 95.29227 * 9 7 5 11 11 H 1.48495 * 109.47217 * 215.28974 * 9 7 5 12 12 H 1.48504 * 109.47172 * 335.29214 * 9 7 5 13 13 C 1.34780 * 119.99568 * 90.00076 * 4 3 2 14 14 O 1.21602 * 120.00090 * 5.07404 * 13 4 3 15 15 C 1.47721 * 119.99899 * 185.06707 * 13 4 3 16 16 C 1.41578 * 119.90675 * 180.16007 * 15 13 4 17 17 C 1.36375 * 118.23120 * 180.02562 * 16 15 13 18 18 C 1.41189 * 117.95565 * 0.02562 * 17 16 15 19 19 O 1.21984 * 120.20755 * 180.02562 * 18 17 16 20 20 N 1.34600 * 119.58152 * 0.02562 * 18 17 16 21 21 C 1.39875 * 119.09592 * 180.02562 * 20 18 17 22 22 C 1.38941 * 120.04851 * 227.97143 * 21 20 18 23 23 C 1.38068 * 119.94580 * 179.76694 * 22 21 20 24 24 C 1.38514 * 120.05106 * 0.52495 * 23 22 21 25 25 F 1.35097 * 119.94965 * 179.71843 * 24 23 22 26 26 C 1.38520 * 120.09824 * 359.70621 * 24 23 22 27 27 C 1.38060 * 120.05286 * 0.03814 * 26 24 23 28 28 N 1.28387 * 121.81086 * 359.97438 * 20 18 17 29 29 H 1.09002 * 109.46661 * 300.00029 * 1 2 3 30 30 H 1.09001 * 109.46749 * 59.99661 * 1 2 3 31 31 H 1.08998 * 109.47258 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47340 * 240.00205 * 2 1 3 33 33 H 1.09005 * 109.47281 * 119.99835 * 2 1 3 34 34 H 1.08995 * 109.47036 * 60.00393 * 3 2 1 35 35 H 1.08992 * 109.47519 * 300.00047 * 3 2 1 36 36 H 0.96997 * 119.99510 * 185.02656 * 8 7 5 37 37 H 1.07997 * 120.88609 * 359.97438 * 16 15 13 38 38 H 1.07999 * 121.02245 * 179.97438 * 17 16 15 39 39 H 1.07991 * 120.02722 * 359.97438 * 22 21 20 40 40 H 1.07998 * 119.97422 * 180.22683 * 23 22 21 41 41 H 1.08004 * 119.97270 * 180.02562 * 26 24 23 42 42 H 1.07996 * 120.02607 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1888 1.4426 1.1858 6 1 5.0121 0.7597 1.3343 7 6 3.8234 2.3221 2.1992 8 7 4.2962 2.1576 3.4136 9 14 2.6604 3.7374 1.8334 10 1 1.2713 3.3371 2.1732 11 1 3.0477 4.9188 2.6453 12 1 2.7376 4.0813 0.3908 13 6 4.1793 1.4423 -1.1664 14 8 3.5753 1.5353 -2.2177 15 6 5.6522 1.3293 -1.1683 16 6 6.3588 1.3327 -2.3952 17 6 7.7179 1.2260 -2.3572 18 6 8.3382 1.1179 -1.0935 19 8 9.5514 1.0208 -1.0116 20 7 7.5824 1.1225 0.0203 21 6 8.2076 1.0154 1.2670 22 6 7.7329 0.1098 2.2078 23 6 8.3546 0.0024 3.4359 24 6 9.4440 0.8041 3.7344 25 9 10.0472 0.7013 4.9388 26 6 9.9160 1.7110 2.7997 27 6 9.3007 1.8182 1.5684 28 7 6.3035 1.2236 -0.0300 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9564 -0.8899 36 1 3.9856 2.7256 4.1360 37 1 5.8355 1.4168 -3.3361 38 1 8.3016 1.2235 -3.2658 39 1 6.8805 -0.5118 1.9774 40 1 7.9883 -0.7039 4.1661 41 1 10.7658 2.3349 3.0344 42 1 9.6693 2.5251 0.8399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058225147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:54 Heat of formation + Delta-G solvation = 9.595254 kcal Electronic energy + Delta-G solvation = -30675.158741 eV Core-core repulsion = 26344.746121 eV Total energy + Delta-G solvation = -4330.412620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.76887 -42.01838 -39.23626 -38.41886 -37.30570 -35.63276 -34.30015 -33.19188 -31.94480 -31.13691 -30.93747 -29.35623 -26.35836 -25.60784 -24.75591 -24.02114 -22.75613 -22.09117 -21.33677 -19.99562 -18.59349 -18.14446 -17.48229 -16.98672 -16.66660 -16.38882 -15.96036 -15.51747 -15.41805 -15.19492 -14.64753 -14.36724 -14.28096 -14.11494 -13.54334 -13.42776 -13.27049 -13.13632 -13.03496 -12.88831 -12.73200 -12.47718 -12.36905 -12.02202 -11.77944 -11.63738 -11.27534 -11.06719 -11.02134 -10.97884 -10.45766 -10.34669 -10.12531 -9.95448 -9.46872 -9.33190 -8.96463 -8.88570 -8.74194 -8.01138 -7.75570 -6.58156 -4.25938 0.65647 1.31943 1.39605 1.62850 2.48042 2.94458 3.10926 3.17541 3.32398 3.66782 3.94130 3.99825 4.14682 4.36752 4.55889 4.81627 4.90965 4.94728 5.03470 5.09309 5.30753 5.38944 5.46378 5.48843 5.50592 5.57049 5.76260 5.91572 6.00208 6.02677 6.11844 6.17045 6.20684 6.22604 6.26155 6.29451 6.32689 6.46709 6.50965 6.62185 6.75722 6.98244 7.22007 7.85544 7.87920 8.26931 8.46340 8.77751 9.09326 9.41340 10.44980 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.004701 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.164944 B = 5954.267848 C = 7571.058381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.101 3.899 4 N -0.437 5.437 5 C -0.318 4.318 6 H 0.135 0.865 7 C 0.072 3.928 8 N -0.841 5.841 9 Si 0.872 3.128 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.259 1.259 13 C 0.532 3.468 14 O -0.591 6.591 15 C 0.024 3.976 16 C -0.018 4.018 17 C -0.218 4.218 18 C 0.477 3.523 19 O -0.538 6.538 20 N -0.304 5.304 21 C 0.122 3.878 22 C -0.046 4.046 23 C -0.137 4.137 24 C 0.103 3.897 25 F -0.140 7.140 26 C -0.149 4.149 27 C -0.061 4.061 28 N -0.136 5.136 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.278 0.722 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.962 -2.538 -2.054 4.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.021 4.021 4 N -0.156 5.156 5 C -0.448 4.448 6 H 0.152 0.848 7 C -0.138 4.138 8 N -0.475 5.475 9 Si 0.699 3.301 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.183 1.183 13 C 0.321 3.679 14 O -0.476 6.476 15 C -0.144 4.144 16 C -0.042 4.042 17 C -0.247 4.247 18 C 0.277 3.723 19 O -0.417 6.417 20 N -0.117 5.117 21 C 0.033 3.967 22 C -0.066 4.066 23 C -0.157 4.157 24 C 0.084 3.916 25 F -0.119 7.119 26 C -0.168 4.168 27 C -0.081 4.081 28 N 0.037 4.963 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.349 -2.484 -1.435 4.409 hybrid contribution -0.360 0.962 -0.509 1.147 sum 2.988 -1.522 -1.944 3.876 Atomic orbital electron populations 1.21708 0.96102 1.01246 1.01518 1.21762 0.95019 0.97424 1.02682 1.21741 0.81751 0.97065 1.01592 1.43727 1.04423 1.61650 1.05775 1.19787 1.16413 1.19746 0.88885 0.84833 1.25493 0.96500 0.96679 0.95137 1.69585 1.40195 1.38012 0.99758 0.86940 0.80637 0.82527 0.79959 1.19724 1.21217 1.18309 1.17491 0.83849 0.82130 0.84473 1.90673 1.67960 1.57302 1.31672 1.21942 0.96190 1.08025 0.88206 1.22318 0.93728 0.88483 0.99624 1.22445 0.95145 1.09605 0.97465 1.18214 0.88413 0.79901 0.85751 1.90917 1.12660 1.51423 1.86715 1.44450 1.04152 1.56406 1.06737 1.17472 0.95760 0.99055 0.84439 1.20897 0.98233 0.95763 0.91708 1.20942 0.95624 1.01221 0.97884 1.17750 0.94114 0.98390 0.81355 1.91483 1.82459 1.95303 1.42651 1.20854 1.02407 1.00443 0.93110 1.20804 0.94353 0.97057 0.95935 1.73098 0.91257 1.05763 1.26137 0.92909 0.92910 0.92884 0.91962 0.91035 0.91503 0.90807 0.91121 0.82555 0.82086 0.83792 0.83908 0.84242 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.68 16 2 C -0.13 -2.22 6.26 -26.73 -0.17 -2.39 16 3 C 0.10 2.00 4.15 -4.04 -0.02 1.99 16 4 N -0.44 -9.61 2.03 -115.94 -0.24 -9.84 16 5 C -0.32 -7.42 8.12 -15.02 -0.12 -7.54 16 6 H 0.13 3.24 5.74 -52.49 -0.30 2.93 16 7 C 0.07 1.73 5.40 -17.45 -0.09 1.64 16 8 N -0.84 -20.94 13.95 55.50 0.77 -20.17 16 9 Si 0.87 19.12 24.89 -169.99 -4.23 14.89 16 10 H -0.27 -5.63 6.84 56.52 0.39 -5.25 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.26 -5.84 7.08 56.52 0.40 -5.44 16 13 C 0.53 11.52 7.61 -12.38 -0.09 11.42 16 14 O -0.59 -13.32 15.94 5.28 0.08 -13.24 16 15 C 0.02 0.48 6.75 -82.83 -0.56 -0.08 16 16 C -0.02 -0.28 9.68 -38.98 -0.38 -0.66 16 17 C -0.22 -3.34 10.11 -39.13 -0.40 -3.74 16 18 C 0.48 8.68 7.22 -15.22 -0.11 8.57 16 19 O -0.54 -10.57 15.53 4.93 0.08 -10.49 16 20 N -0.30 -5.75 3.36 -12.55 -0.04 -5.79 16 21 C 0.12 2.21 5.59 -83.67 -0.47 1.74 16 22 C -0.05 -0.79 9.64 -39.38 -0.38 -1.17 16 23 C -0.14 -2.09 10.02 -39.54 -0.40 -2.48 16 24 C 0.10 1.55 7.30 -39.38 -0.29 1.27 16 25 F -0.14 -2.05 17.26 2.25 0.04 -2.01 16 26 C -0.15 -2.16 10.02 -39.54 -0.40 -2.56 16 27 C -0.06 -1.01 8.65 -39.39 -0.34 -1.35 16 28 N -0.14 -2.75 6.51 33.40 0.22 -2.53 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.35 3.85 -51.93 -0.20 1.15 16 35 H 0.07 1.46 7.36 -51.93 -0.38 1.08 16 36 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.16 2.19 7.72 -52.49 -0.41 1.79 16 38 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 39 H 0.14 2.45 7.86 -52.49 -0.41 2.04 16 40 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 42 H 0.14 2.17 7.32 -52.49 -0.38 1.79 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -27.59 359.96 -6.35 -33.94 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.62 Total: 6.83 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -3.84 Total: 2.99 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.71 Total: -38.33 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.16 Total: -23.73 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.23 Total: 14.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.59 -6.35 -33.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058225147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.531 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds