Wall clock time and date at job start Tue Mar 31 2020 05:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.75460 * 124.59159 * 2 1 4 4 C 1.70449 * 92.53193 * 179.82145 * 3 2 1 5 5 N 1.38546 * 124.66125 * 180.24206 * 4 3 2 6 6 C 1.34777 * 119.99567 * 0.11669 * 5 4 3 7 7 O 1.21560 * 120.00177 * 0.02562 * 6 5 4 8 8 C 1.47833 * 119.99997 * 180.02562 * 6 5 4 9 9 C 1.39946 * 120.02371 * 359.72146 * 8 6 5 10 10 C 1.38323 * 120.35504 * 179.74346 * 9 8 6 11 11 C 1.37755 * 120.41231 * 0.55959 * 10 9 8 12 12 C 1.40755 * 120.04548 * 359.70043 * 11 10 9 13 13 C 1.41439 * 120.17741 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99861 * 24.43172 * 13 12 11 15 15 C 1.39931 * 119.99920 * 204.43629 * 13 12 11 16 16 N 1.30833 * 120.00377 * 17.88688 * 15 13 12 17 17 Si 1.86806 * 120.00100 * 197.88793 * 15 13 12 18 18 H 1.48503 * 109.46894 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47112 * 119.99602 * 17 15 13 20 20 H 1.48501 * 109.47214 * 240.00018 * 17 15 13 21 21 C 1.39018 * 120.02897 * 180.02562 * 8 6 5 22 22 C 1.37114 * 110.68246 * 0.34499 * 4 3 2 23 23 C 1.46608 * 123.59807 * 179.86209 * 22 4 3 24 24 N 1.34771 * 120.00702 * 89.70337 * 23 22 4 25 25 O 1.21715 * 119.99826 * 269.70686 * 23 22 4 26 26 C 1.32548 * 124.59048 * 180.02562 * 2 1 3 27 27 C 1.50697 * 123.41996 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.47308 * 269.97552 * 1 2 3 29 29 H 1.08996 * 109.47289 * 29.97938 * 1 2 3 30 30 H 1.09002 * 109.47157 * 149.97602 * 1 2 3 31 31 H 0.96991 * 120.00277 * 180.12343 * 5 4 3 32 32 H 1.08003 * 119.82254 * 0.02868 * 9 8 6 33 33 H 1.08003 * 119.79661 * 180.28695 * 10 9 8 34 34 H 1.08004 * 119.97915 * 179.72153 * 11 10 9 35 35 H 0.96998 * 120.00255 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.20510 * 359.95562 * 21 8 6 37 37 H 0.96997 * 120.00615 * 179.97438 * 24 23 22 38 38 H 0.97013 * 119.99300 * 359.72518 * 24 23 22 39 39 H 1.08997 * 109.46911 * 269.97656 * 27 26 2 40 40 H 1.09001 * 109.46901 * 29.97660 * 27 26 2 41 41 H 1.08997 * 109.47084 * 149.97427 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5031 1.4444 0.0000 4 6 3.9477 0.5397 0.0053 5 7 5.2203 1.0872 0.0124 6 6 5.3779 2.4257 0.0180 7 8 4.4035 3.1525 0.0172 8 6 6.7358 3.0101 0.0250 9 6 7.8580 2.1739 0.0318 10 6 9.1317 2.7133 0.0330 11 6 9.3106 4.0792 0.0392 12 6 8.1940 4.9362 0.0380 13 6 8.3744 6.3390 0.0438 14 1 9.2894 6.7673 -0.3380 15 6 7.3674 7.1718 0.5442 16 7 6.4314 6.6774 1.3130 17 14 7.3595 8.9898 0.1146 18 1 8.5171 9.2958 -0.7639 19 1 6.0986 9.3254 -0.5943 20 1 7.4564 9.7931 1.3598 21 6 6.8991 4.3906 0.0313 22 6 3.6772 -0.8045 -0.0007 23 6 4.7143 -1.8407 -0.0012 24 7 5.1914 -2.3173 1.1657 25 8 5.1446 -2.2706 -1.0554 26 6 2.2595 -1.0912 -0.0005 27 6 1.6952 -2.4885 -0.0017 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 5.9978 0.5073 0.0133 32 1 7.7288 1.1016 0.0314 33 1 9.9914 2.0595 0.0335 34 1 10.3082 4.4928 0.0447 35 1 5.7336 7.2548 1.6601 36 1 6.0360 5.0398 0.0303 37 1 5.8774 -3.0031 1.1654 38 1 4.8514 -1.9717 2.0060 39 1 1.5592 -2.8263 1.0257 40 1 0.7339 -2.4917 -0.5155 41 1 2.3844 -3.1582 -0.5161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058248476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:09 Heat of formation + Delta-G solvation = -38.282734 kcal Electronic energy + Delta-G solvation = -26663.458506 eV Core-core repulsion = 22826.775734 eV Total energy + Delta-G solvation = -3836.682772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.098 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.32766 -39.43944 -37.50503 -37.21181 -35.01792 -33.87577 -33.62994 -31.45768 -30.20083 -29.62863 -29.28313 -25.75556 -25.45290 -24.51730 -22.51011 -21.15244 -20.49831 -20.32044 -18.89067 -18.02314 -17.88578 -17.02013 -16.73233 -15.97917 -15.74224 -15.23589 -15.05853 -14.79568 -14.32151 -14.23039 -14.10537 -13.89381 -13.45635 -13.32221 -12.94052 -12.89960 -12.70001 -12.41142 -12.32360 -12.13889 -11.78620 -11.64586 -11.30252 -11.20912 -11.00373 -10.83991 -10.60913 -10.27807 -10.16301 -10.01395 -9.86264 -9.79730 -9.35619 -9.30778 -8.16891 -7.96650 -7.70603 -7.68031 -6.94247 -4.55279 1.01334 1.47261 1.91819 2.13897 2.37773 2.57178 2.66982 3.00652 3.03842 3.06755 3.14920 3.53288 3.63769 3.82313 4.46165 4.82348 4.97338 5.07493 5.25283 5.34897 5.37862 5.42813 5.45320 5.56969 5.67477 5.77164 5.81596 5.91758 6.09251 6.15015 6.41769 6.52651 6.55499 6.64852 6.77773 6.83002 7.04997 7.18550 7.21195 7.29443 7.52747 7.64303 7.79906 7.99235 8.17530 8.30416 8.33686 8.65377 8.67310 10.00479 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.003122 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.067560 B = 8966.669841 C =10570.172054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.269 4.269 3 S 0.299 5.701 4 C 0.066 3.934 5 N -0.635 5.635 6 C 0.559 3.441 7 O -0.505 6.505 8 C -0.129 4.129 9 C -0.220 4.220 10 C -0.092 4.092 11 C -0.207 4.207 12 C 0.098 3.902 13 C -0.455 4.455 14 H 0.084 0.916 15 C 0.073 3.927 16 N -0.781 5.781 17 Si 0.911 3.089 18 H -0.259 1.259 19 H -0.269 1.269 20 H -0.273 1.273 21 C -0.084 4.084 22 C -0.239 4.239 23 C 0.595 3.405 24 N -0.848 5.848 25 O -0.537 6.537 26 C -0.051 4.051 27 C -0.093 4.093 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.417 0.583 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.286 0.714 36 H 0.137 0.863 37 H 0.401 0.599 38 H 0.404 0.596 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.775 -12.690 2.338 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.386 4.386 3 S 0.562 5.438 4 C -0.153 4.153 5 N -0.279 5.279 6 C 0.352 3.648 7 O -0.382 6.382 8 C -0.132 4.132 9 C -0.240 4.240 10 C -0.110 4.110 11 C -0.227 4.227 12 C 0.095 3.905 13 C -0.483 4.483 14 H 0.102 0.898 15 C -0.147 4.147 16 N -0.405 5.405 17 Si 0.735 3.265 18 H -0.183 1.183 19 H -0.194 1.194 20 H -0.198 1.198 21 C -0.104 4.104 22 C -0.260 4.260 23 C 0.378 3.622 24 N -0.412 5.412 25 O -0.413 6.413 26 C -0.062 4.062 27 C -0.152 4.152 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.256 0.744 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.155 0.845 37 H 0.232 0.768 38 H 0.232 0.768 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.742 -10.628 1.705 14.517 hybrid contribution 1.092 -1.311 0.395 1.752 sum -8.650 -11.939 2.100 14.892 Atomic orbital electron populations 1.20199 0.88033 1.02621 1.02202 1.24651 1.00855 0.98836 1.14292 1.84354 0.88049 1.01607 1.69740 1.21918 0.93282 0.95894 1.04200 1.43047 1.05016 1.08501 1.71319 1.19349 0.91432 0.79805 0.74253 1.90624 1.40685 1.58459 1.48410 1.19149 0.88745 0.95172 1.10163 1.20303 0.92552 0.96142 1.14989 1.20435 0.95220 0.95045 1.00339 1.21153 0.97795 0.92677 1.11045 1.17599 0.90465 0.93531 0.88865 1.19655 1.02463 0.90700 1.35503 0.89790 1.25995 0.94191 1.01959 0.92534 1.69776 1.10863 1.38573 1.21334 0.86200 0.79647 0.81228 0.79395 1.18251 1.19428 1.19806 1.21655 0.98926 0.91279 0.98535 1.19354 0.94061 0.90498 1.22101 1.17515 0.80414 0.80648 0.83598 1.43932 1.44326 1.44190 1.08706 1.90867 1.59551 1.59523 1.31386 1.19078 0.89135 0.95931 1.02105 1.20471 1.00901 0.91829 1.02001 0.91244 0.91627 0.91084 0.74421 0.89401 0.88544 0.88275 0.90294 0.84518 0.76822 0.76785 0.91261 0.91095 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.03 36.01 0.36 -0.31 16 2 C -0.27 -3.42 6.42 -36.22 -0.23 -3.66 16 3 S 0.30 4.64 19.92 -107.50 -2.14 2.50 16 4 C 0.07 1.09 6.98 -14.92 -0.10 0.99 16 5 N -0.64 -11.20 5.31 -12.49 -0.07 -11.26 16 6 C 0.56 11.73 7.73 -12.33 -0.10 11.63 16 7 O -0.50 -11.43 13.75 5.31 0.07 -11.36 16 8 C -0.13 -2.92 5.87 -105.04 -0.62 -3.54 16 9 C -0.22 -4.51 9.55 -38.91 -0.37 -4.88 16 10 C -0.09 -1.90 10.01 -39.73 -0.40 -2.29 16 11 C -0.21 -4.70 9.78 -38.81 -0.38 -5.08 16 12 C 0.10 2.48 5.57 -106.87 -0.60 1.88 16 13 C -0.45 -11.41 9.05 -37.73 -0.34 -11.75 16 14 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 15 C 0.07 1.75 5.14 -17.34 -0.09 1.66 16 16 N -0.78 -19.62 10.95 55.55 0.61 -19.02 16 17 Si 0.91 17.97 29.60 -169.99 -5.03 12.94 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.08 -2.12 8.24 -38.44 -0.32 -2.44 16 22 C -0.24 -3.55 5.75 -104.40 -0.60 -4.15 16 23 C 0.60 8.50 6.36 -12.89 -0.08 8.42 16 24 N -0.85 -8.19 8.87 30.25 0.27 -7.92 16 25 O -0.54 -9.70 17.95 5.18 0.09 -9.61 16 26 C -0.05 -0.67 6.00 -104.01 -0.62 -1.29 16 27 C -0.09 -0.93 9.68 36.00 0.35 -0.58 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.56 6.64 -51.93 -0.34 0.21 16 31 H 0.42 6.76 6.17 -40.82 -0.25 6.51 16 32 H 0.09 1.54 6.38 -52.48 -0.33 1.21 16 33 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 34 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 35 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 36 H 0.14 3.70 5.74 -52.49 -0.30 3.40 16 37 H 0.40 3.14 8.93 -40.82 -0.36 2.78 16 38 H 0.40 3.10 8.81 -40.81 -0.36 2.74 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.60 6.62 -51.93 -0.34 0.26 16 41 H 0.06 0.70 7.69 -51.93 -0.40 0.30 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -30.22 363.55 -9.22 -39.44 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -4.36 Total: 14.19 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -4.14 Total: -15.38 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.81 Total: -38.20 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.17 Total: -20.97 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -2.14 Total: 2.50 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.22 -9.22 -39.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.159 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds