Wall clock time and date at job start Tue Mar 31 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34699 * 125.86199 * 2 1 4 4 C 1.36684 * 107.59125 * 180.25770 * 3 2 1 5 5 C 1.47935 * 126.26756 * 179.97438 * 4 3 2 6 6 N 1.29848 * 125.31421 * 179.74371 * 5 4 3 7 7 C 1.32788 * 115.76016 * 179.85276 * 6 5 4 8 8 C 1.47266 * 122.43284 * 180.22962 * 7 6 5 9 9 O 1.21634 * 120.00114 * 174.09428 * 8 7 6 10 10 N 1.34772 * 119.99728 * 354.08647 * 8 7 6 11 11 C 1.46499 * 119.99962 * 184.09325 * 10 8 7 12 12 C 1.50693 * 109.47133 * 90.00624 * 11 10 8 13 13 H 1.08003 * 120.00217 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00121 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99965 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00015 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47265 * 89.99834 * 16 14 12 18 18 H 1.48500 * 109.47273 * 210.00030 * 16 14 12 19 19 H 1.48500 * 109.47286 * 329.99958 * 16 14 12 20 20 C 1.46504 * 120.00365 * 4.10228 * 10 8 7 21 21 C 1.52999 * 109.47222 * 83.28573 * 20 10 8 22 22 C 1.47200 * 109.47058 * 180.02562 * 21 20 10 23 23 N 5.22533 * 142.46785 * 202.10504 * 2 1 3 24 24 C 1.35074 * 115.13295 * 0.43163 * 7 6 5 25 25 S 1.71001 * 109.14339 * 359.77070 * 24 7 6 26 26 C 1.41040 * 107.46732 * 0.02562 * 4 3 2 27 27 N 1.30609 * 108.06478 * 0.02562 * 26 4 3 28 28 H 1.09005 * 109.47513 * 269.71936 * 1 2 3 29 29 H 1.09001 * 109.46685 * 29.71866 * 1 2 3 30 30 H 1.09001 * 109.47422 * 149.71521 * 1 2 3 31 31 H 1.08004 * 126.20805 * 0.23054 * 3 2 1 32 32 H 1.09000 * 109.47099 * 210.00934 * 11 10 8 33 33 H 1.08999 * 109.47195 * 330.00290 * 11 10 8 34 34 H 0.96997 * 119.99955 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47218 * 203.29191 * 20 10 8 36 36 H 1.08998 * 109.46573 * 323.28930 * 20 10 8 37 37 H 1.08997 * 109.47529 * 300.00428 * 21 20 10 38 38 H 1.08998 * 109.47055 * 60.00652 * 21 20 10 39 39 H 1.07997 * 125.42314 * 179.75269 * 24 7 6 40 40 H 1.08008 * 125.97133 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2541 1.0916 0.0000 4 6 3.5520 0.6631 -0.0059 5 6 4.7569 1.5214 -0.0085 6 7 5.9830 1.0939 -0.0094 7 6 6.9217 2.0331 -0.0149 8 6 8.3592 1.7130 -0.0216 9 8 9.1800 2.6035 -0.1349 10 7 8.7651 0.4335 0.0980 11 6 10.1945 0.1233 0.1816 12 6 10.6265 0.1306 1.6253 13 1 9.9081 0.3445 2.4029 14 6 11.9388 -0.1357 1.9536 15 7 12.3159 -0.1289 3.2135 16 14 13.1815 -0.5049 0.6087 17 1 13.8118 0.7612 0.1559 18 1 14.2273 -1.4169 1.1379 19 1 12.4935 -1.1527 -0.5368 20 6 7.7772 -0.6473 0.1442 21 6 7.3676 -1.0252 -1.2807 22 6 6.3745 -2.1107 -1.2342 23 7 5.6087 -2.9493 -1.1979 24 6 6.4624 3.3033 -0.0097 25 16 4.7525 3.2812 -0.0036 26 6 3.5322 -0.7471 -0.0101 27 7 2.2850 -1.1347 -0.0075 28 1 -0.3634 -0.0050 1.0277 29 1 -0.3633 0.8925 -0.5095 30 1 -0.3634 -0.8874 -0.5182 31 1 1.9216 2.1192 0.0035 32 1 10.3782 -0.8616 -0.2477 33 1 10.7617 0.8721 -0.3712 34 1 13.2393 -0.3159 3.4444 35 1 8.2113 -1.5155 0.6399 36 1 6.8996 -0.3138 0.6981 37 1 6.9335 -0.1570 -1.7764 38 1 8.2452 -1.3587 -1.8346 39 1 7.0771 4.1912 -0.0091 40 1 4.3974 -1.3937 -0.0147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:20 Heat of formation + Delta-G solvation = 143.841293 kcal Electronic energy + Delta-G solvation = -27189.161369 eV Core-core repulsion = 23327.242927 eV Total energy + Delta-G solvation = -3861.918442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55836 -40.34927 -38.12045 -36.78866 -35.28606 -33.84787 -32.72221 -31.78054 -30.87745 -29.68046 -28.22119 -27.27654 -25.39837 -23.99948 -23.14219 -21.69447 -21.41052 -20.05220 -18.84991 -17.92910 -17.50498 -17.38093 -16.77345 -16.10411 -15.92517 -15.54344 -15.12362 -15.00745 -14.69290 -14.34852 -14.11850 -13.82657 -13.66519 -13.44804 -13.21000 -13.08339 -12.98638 -12.80786 -12.49822 -12.37755 -12.28559 -11.84962 -11.67913 -11.48045 -11.13171 -10.97437 -10.77015 -10.52365 -10.20017 -10.10099 -9.84380 -9.68318 -9.52316 -9.37950 -9.17720 -8.58579 -8.19416 -7.78669 -6.08106 -4.07628 0.34940 1.12119 1.45892 1.55157 2.01049 2.08265 2.81465 2.89175 2.94646 3.30466 3.36094 3.37872 3.59869 3.79491 3.84292 4.22542 4.34321 4.39927 4.42542 4.69978 4.83842 4.90188 4.97262 5.17032 5.24831 5.27249 5.34704 5.39682 5.40295 5.42934 5.72768 5.86662 6.08936 6.20641 6.47327 6.51352 6.69226 6.90600 7.24201 7.29641 7.49502 7.59000 7.70166 8.12209 8.44952 8.79443 8.96604 9.51242 11.05151 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.003333 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.528525 B = 8399.310663 C = 9550.042257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 C 0.087 3.913 4 C -0.178 4.178 5 C 0.141 3.859 6 N -0.439 5.439 7 C 0.030 3.970 8 C 0.583 3.417 9 O -0.530 6.530 10 N -0.572 5.572 11 C 0.213 3.787 12 C -0.531 4.531 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.896 5.896 16 Si 0.875 3.125 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.264 1.264 20 C 0.110 3.890 21 C -0.041 4.041 22 C 0.223 3.777 23 N -0.446 5.446 24 C -0.218 4.218 25 S 0.142 5.858 26 C 0.097 3.903 27 N -0.287 5.287 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.182 0.818 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.190 0.810 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.003 5.265 -9.239 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.147 5.147 3 C -0.065 4.065 4 C -0.194 4.194 5 C -0.136 4.136 6 N -0.155 5.155 7 C -0.104 4.104 8 C 0.367 3.633 9 O -0.406 6.406 10 N -0.301 5.301 11 C 0.093 3.907 12 C -0.569 4.569 13 H 0.094 0.906 14 C -0.129 4.129 15 N -0.534 5.534 16 Si 0.702 3.298 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.016 4.016 21 C -0.082 4.082 22 C -0.094 4.094 23 N -0.124 5.124 24 C -0.359 4.359 25 S 0.400 5.600 26 C -0.093 4.093 27 N -0.107 5.107 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.199 0.801 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.207 0.793 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -26.099 3.684 -9.110 27.888 hybrid contribution 2.591 0.707 -0.470 2.726 sum -23.509 4.391 -9.580 25.762 Atomic orbital electron populations 1.21964 0.73430 1.04901 1.03893 1.48456 1.07136 1.03690 1.55444 1.22479 0.90102 0.93798 1.00138 1.17733 0.89077 0.92453 1.20122 1.25039 0.93230 0.92583 1.02763 1.67428 0.98237 1.33325 1.16480 1.20459 0.95453 0.88173 1.06348 1.17074 0.84842 0.83440 0.77933 1.90797 1.53076 1.46253 1.50507 1.47677 1.08638 1.04429 1.69316 1.19808 0.75798 0.96455 0.98637 1.21312 0.95937 1.48671 0.91014 0.90584 1.24847 0.98022 0.94685 0.95355 1.69894 1.17718 1.49149 1.16673 0.86871 0.81670 0.78835 0.82454 1.19888 1.21125 1.18872 1.21807 0.94334 0.91662 0.93814 1.19762 0.94255 0.92442 1.01757 1.29102 0.93720 0.93720 0.92849 1.81227 1.11177 1.11121 1.08833 1.26326 0.98727 1.02809 1.08068 1.83544 1.01850 1.06826 1.67790 1.24205 0.95281 0.93424 0.96357 1.77431 1.01640 1.07265 1.24326 0.90207 0.89127 0.88853 0.80097 0.94677 0.94083 0.92531 0.89544 0.86724 0.87659 0.87688 0.79325 0.79439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.40 11.45 59.85 0.69 1.08 16 2 N -0.37 -3.24 4.00 -67.86 -0.27 -3.51 16 3 C 0.09 0.70 11.25 -16.86 -0.19 0.51 16 4 C -0.18 -1.97 6.09 -105.43 -0.64 -2.62 16 5 C 0.14 1.66 7.46 -14.42 -0.11 1.55 16 6 N -0.44 -6.13 5.21 -8.10 -0.04 -6.17 16 7 C 0.03 0.47 6.33 -84.91 -0.54 -0.06 16 8 C 0.58 11.56 7.59 -12.59 -0.10 11.47 16 9 O -0.53 -12.28 16.22 5.25 0.09 -12.19 16 10 N -0.57 -11.26 2.47 -176.39 -0.44 -11.69 16 11 C 0.21 4.93 4.23 -5.20 -0.02 4.91 16 12 C -0.53 -14.78 9.94 -34.44 -0.34 -15.13 16 13 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 14 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 16 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 20 C 0.11 1.74 4.94 -4.04 -0.02 1.72 16 21 C -0.04 -0.52 5.45 -29.52 -0.16 -0.68 16 22 C 0.22 3.02 14.07 -20.75 -0.29 2.73 16 23 N -0.45 -6.81 17.35 42.16 0.73 -6.08 16 24 C -0.22 -2.85 10.56 29.61 0.31 -2.54 16 25 S 0.14 1.35 22.96 -107.50 -2.47 -1.12 16 26 C 0.10 1.26 11.97 -17.01 -0.20 1.06 16 27 N -0.29 -3.64 12.53 30.84 0.39 -3.26 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.04 0.76 7.13 -51.93 -0.37 0.39 16 33 H 0.04 1.00 6.79 -51.93 -0.35 0.65 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.09 1.41 8.02 -51.93 -0.42 0.99 16 36 H 0.12 1.81 5.19 -51.93 -0.27 1.54 16 37 H 0.11 1.29 6.97 -51.93 -0.36 0.93 16 38 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.19 2.36 8.00 -52.49 -0.42 1.94 16 40 H 0.19 2.63 5.15 -52.48 -0.27 2.36 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -36.03 363.96 -6.30 -42.34 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.16 Total: 0.38 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -1.71 Total: 6.00 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 1.14 Total: -57.19 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.47 Total: -1.12 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.03 -6.30 -42.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.178 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds