Wall clock time and date at job start Tue Mar 31 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34699 * 125.86199 * 2 1 4 4 C 1.36684 * 107.59125 * 180.25770 * 3 2 1 5 5 C 1.47935 * 126.26756 * 179.97438 * 4 3 2 6 6 N 1.29848 * 125.31421 * 179.74371 * 5 4 3 7 7 C 1.32788 * 115.76016 * 179.85276 * 6 5 4 8 8 C 1.47266 * 122.43284 * 180.22962 * 7 6 5 9 9 O 1.21634 * 120.00114 * 174.09428 * 8 7 6 10 10 N 1.34772 * 119.99728 * 354.08647 * 8 7 6 11 11 C 1.46499 * 119.99962 * 184.09325 * 10 8 7 12 12 C 1.50693 * 109.47133 * 90.00624 * 11 10 8 13 13 H 1.08003 * 120.00217 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00121 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99965 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00015 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47265 * 89.99834 * 16 14 12 18 18 H 1.48500 * 109.47273 * 210.00030 * 16 14 12 19 19 H 1.48500 * 109.47286 * 329.99958 * 16 14 12 20 20 C 1.46504 * 120.00365 * 4.10228 * 10 8 7 21 21 C 1.52999 * 109.47222 * 83.28573 * 20 10 8 22 22 C 1.47200 * 109.47058 * 180.02562 * 21 20 10 23 23 N 5.22533 * 142.46785 * 202.10504 * 2 1 3 24 24 C 1.35074 * 115.13295 * 0.43163 * 7 6 5 25 25 S 1.71001 * 109.14339 * 359.77070 * 24 7 6 26 26 C 1.41040 * 107.46732 * 0.02562 * 4 3 2 27 27 N 1.30609 * 108.06478 * 0.02562 * 26 4 3 28 28 H 1.09005 * 109.47513 * 269.71936 * 1 2 3 29 29 H 1.09001 * 109.46685 * 29.71866 * 1 2 3 30 30 H 1.09001 * 109.47422 * 149.71521 * 1 2 3 31 31 H 1.08004 * 126.20805 * 0.23054 * 3 2 1 32 32 H 1.09000 * 109.47099 * 210.00934 * 11 10 8 33 33 H 1.08999 * 109.47195 * 330.00290 * 11 10 8 34 34 H 0.96997 * 119.99955 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.47218 * 203.29191 * 20 10 8 36 36 H 1.08998 * 109.46573 * 323.28930 * 20 10 8 37 37 H 1.08997 * 109.47529 * 300.00428 * 21 20 10 38 38 H 1.08998 * 109.47055 * 60.00652 * 21 20 10 39 39 H 1.07997 * 125.42314 * 179.75269 * 24 7 6 40 40 H 1.08008 * 125.97133 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2541 1.0916 0.0000 4 6 3.5520 0.6631 -0.0059 5 6 4.7569 1.5214 -0.0085 6 7 5.9830 1.0939 -0.0094 7 6 6.9217 2.0331 -0.0149 8 6 8.3592 1.7130 -0.0216 9 8 9.1800 2.6035 -0.1349 10 7 8.7651 0.4335 0.0980 11 6 10.1945 0.1233 0.1816 12 6 10.6265 0.1306 1.6253 13 1 9.9081 0.3445 2.4029 14 6 11.9388 -0.1357 1.9536 15 7 12.3159 -0.1289 3.2135 16 14 13.1815 -0.5049 0.6087 17 1 13.8118 0.7612 0.1559 18 1 14.2273 -1.4169 1.1379 19 1 12.4935 -1.1527 -0.5368 20 6 7.7772 -0.6473 0.1442 21 6 7.3676 -1.0252 -1.2807 22 6 6.3745 -2.1107 -1.2342 23 7 5.6087 -2.9493 -1.1979 24 6 6.4624 3.3033 -0.0097 25 16 4.7525 3.2812 -0.0036 26 6 3.5322 -0.7471 -0.0101 27 7 2.2850 -1.1347 -0.0075 28 1 -0.3634 -0.0050 1.0277 29 1 -0.3633 0.8925 -0.5095 30 1 -0.3634 -0.8874 -0.5182 31 1 1.9216 2.1192 0.0035 32 1 10.3782 -0.8616 -0.2477 33 1 10.7617 0.8721 -0.3712 34 1 13.2393 -0.3159 3.4444 35 1 8.2113 -1.5155 0.6399 36 1 6.8996 -0.3138 0.6981 37 1 6.9335 -0.1570 -1.7764 38 1 8.2452 -1.3587 -1.8346 39 1 7.0771 4.1912 -0.0091 40 1 4.3974 -1.3937 -0.0147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058282969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:18 Heat of formation + Delta-G solvation = 119.257894 kcal Electronic energy + Delta-G solvation = -27190.227385 eV Core-core repulsion = 23327.242927 eV Total energy + Delta-G solvation = -3862.984458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.31409 -41.57048 -39.43264 -38.02419 -36.77452 -34.79914 -34.46763 -32.67745 -32.34136 -30.59370 -29.92589 -27.89977 -26.64257 -25.28717 -24.57783 -22.91764 -22.26060 -21.03044 -19.95273 -19.20612 -19.05521 -18.41802 -18.22620 -17.37913 -16.83977 -16.59669 -16.34334 -16.14180 -15.95322 -15.69980 -15.26482 -14.93001 -14.79220 -14.60313 -14.46509 -14.26760 -13.94138 -13.72394 -13.59671 -13.55085 -13.38345 -13.27290 -13.10471 -12.81376 -12.63432 -12.37712 -12.02059 -11.98862 -11.78503 -11.69558 -11.03850 -11.03596 -10.77259 -10.57223 -10.43725 -10.17669 -9.49533 -8.96326 -8.28197 -6.33647 -0.56961 0.24673 0.57940 0.62785 0.99321 1.39755 1.43342 1.51701 1.52828 1.72040 1.84845 1.88692 2.23893 2.37027 2.51874 2.83254 3.06754 3.20253 3.62619 3.82351 3.92813 4.13134 4.18502 4.22581 4.23260 4.38558 4.47424 4.51151 4.64364 4.66631 4.76068 4.80788 4.84532 4.87718 5.04307 5.29336 5.38435 5.50253 5.65330 5.93023 6.26491 6.43917 6.54121 6.60195 6.66364 6.68634 7.21173 7.35249 8.88864 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.003333 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.528525 B = 8399.310663 C = 9550.042257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.362 5.362 3 C 0.113 3.887 4 C -0.204 4.204 5 C 0.129 3.871 6 N -0.459 5.459 7 C 0.006 3.994 8 C 0.577 3.423 9 O -0.576 6.576 10 N -0.577 5.577 11 C 0.221 3.779 12 C -0.536 4.536 13 H 0.027 0.973 14 C 0.011 3.989 15 N -0.948 5.948 16 Si 0.946 3.054 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.230 1.230 20 C 0.111 3.889 21 C -0.026 4.026 22 C 0.243 3.757 23 N -0.473 5.473 24 C -0.232 4.232 25 S 0.260 5.740 26 C 0.078 3.922 27 N -0.325 5.325 28 H 0.093 0.907 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.229 0.771 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.190 0.810 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.776 6.460 -11.376 29.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.141 5.141 3 C -0.040 4.040 4 C -0.220 4.220 5 C -0.147 4.147 6 N -0.175 5.175 7 C -0.128 4.128 8 C 0.364 3.636 9 O -0.456 6.456 10 N -0.306 5.306 11 C 0.099 3.901 12 C -0.575 4.575 13 H 0.045 0.955 14 C -0.187 4.187 15 N -0.588 5.588 16 Si 0.769 3.231 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.153 1.153 20 C -0.014 4.014 21 C -0.067 4.067 22 C -0.074 4.074 23 N -0.152 5.152 24 C -0.375 4.375 25 S 0.520 5.480 26 C -0.111 4.111 27 N -0.146 5.146 28 H 0.112 0.888 29 H 0.147 0.853 30 H 0.109 0.891 31 H 0.246 0.754 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.207 0.793 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -28.960 4.844 -11.261 31.448 hybrid contribution 3.163 0.456 0.314 3.212 sum -25.796 5.300 -10.947 28.520 Atomic orbital electron populations 1.22417 0.70648 1.06742 1.05376 1.48863 1.08605 1.02926 1.53711 1.23117 0.88686 0.95350 0.96858 1.17831 0.90077 0.91635 1.22430 1.25236 0.92725 0.94868 1.01906 1.67294 0.98903 1.33544 1.17805 1.19862 0.93575 0.89531 1.09877 1.17663 0.86658 0.82714 0.76576 1.90746 1.54910 1.47321 1.52669 1.47663 1.07904 1.05647 1.69336 1.19522 0.78016 0.97268 0.95255 1.21558 0.95326 1.48027 0.92554 0.95499 1.25856 1.00414 0.94421 0.98008 1.70061 1.18441 1.50931 1.19381 0.85734 0.78630 0.78810 0.79952 1.19934 1.20648 1.15250 1.21879 0.93378 0.90166 0.95963 1.19624 0.94762 0.92512 0.99779 1.29064 0.93114 0.93192 0.91993 1.81244 1.12064 1.12250 1.09622 1.26612 1.02075 1.02036 1.06804 1.83026 0.97156 1.02958 1.64875 1.24053 0.95122 0.94482 0.97461 1.77346 1.02035 1.09571 1.25626 0.88842 0.85303 0.89108 0.75423 0.92165 0.95026 0.92378 0.90511 0.86637 0.86691 0.85734 0.79268 0.81368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.45 127.77 1.46 1.84 16 2 N -0.36 -5.32 4.00 -368.60 -1.47 -6.80 16 3 C 0.11 1.38 11.25 83.89 0.94 2.32 16 4 C -0.20 -4.10 6.09 -20.39 -0.12 -4.22 16 5 C 0.13 2.78 7.46 87.56 0.65 3.44 16 6 N -0.46 -12.62 5.21 -179.53 -0.94 -13.55 16 7 C 0.01 0.20 6.33 40.65 0.26 0.46 16 8 C 0.58 23.64 7.59 86.62 0.66 24.29 16 9 O -0.58 -27.79 16.22 -4.14 -0.07 -27.86 16 10 N -0.58 -23.35 2.47 -830.23 -2.05 -25.40 16 11 C 0.22 10.35 4.23 85.63 0.36 10.71 16 12 C -0.54 -31.14 9.94 25.60 0.25 -30.89 16 13 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 14 C 0.01 0.63 5.47 84.66 0.46 1.09 16 15 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 16 Si 0.95 43.46 27.47 68.60 1.88 45.35 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.23 -9.21 6.54 99.48 0.65 -8.56 16 20 C 0.11 3.59 4.94 86.38 0.43 4.02 16 21 C -0.03 -0.64 5.45 28.79 0.16 -0.48 16 22 C 0.24 6.53 14.07 89.44 1.26 7.79 16 23 N -0.47 -14.59 17.35 20.01 0.35 -14.24 16 24 C -0.23 -5.82 10.56 67.09 0.71 -5.11 16 25 S 0.26 4.00 22.96 -56.49 -1.30 2.70 16 26 C 0.08 2.00 11.97 85.56 1.02 3.03 16 27 N -0.33 -7.99 12.53 -56.35 -0.71 -8.70 16 28 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 29 H 0.13 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.23 0.38 8.06 -2.91 -0.02 0.36 16 32 H 0.06 2.51 7.13 -2.39 -0.02 2.50 16 33 H 0.03 1.55 6.79 -2.39 -0.02 1.54 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.08 2.59 8.02 -2.39 -0.02 2.57 16 36 H 0.12 3.80 5.19 -2.39 -0.01 3.79 16 37 H 0.12 2.73 6.97 -2.39 -0.02 2.71 16 38 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.19 4.62 8.00 -2.91 -0.02 4.60 16 40 H 0.17 4.87 5.15 -2.91 -0.01 4.85 16 Total: -1.00 -85.25 363.96 5.55 -79.70 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.05 Total: 10.18 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 8.50 Total: 18.30 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -4.52 Total: -128.37 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.07 Total: -27.86 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.35 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.30 Total: 2.70 kcal Total: -85.25 5.55 -79.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.958 kcal (2) G-P(sol) polarization free energy of solvation -85.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds