Wall clock time and date at job start Tue Mar 31 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31353 * 1 3 3 Si 1.86805 * 120.00186 * 2 1 4 4 H 1.48501 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47102 * 299.99929 * 3 2 1 6 6 H 1.48492 * 109.46868 * 60.00187 * 3 2 1 7 7 C 1.39053 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00323 * 171.21636 * 7 2 1 9 9 N 1.36869 * 119.99834 * 351.20976 * 7 2 1 10 10 C 1.34772 * 119.99951 * 113.21271 * 9 7 2 11 11 O 1.21599 * 119.99815 * 175.80587 * 10 9 7 12 12 C 1.47727 * 120.00073 * 355.53156 * 10 9 7 13 13 C 1.39637 * 120.14913 * 340.03957 * 12 10 9 14 14 C 1.37936 * 119.84553 * 179.71854 * 13 12 10 15 15 C 1.38370 * 120.15203 * 0.55459 * 14 13 12 16 16 S 1.76202 * 119.85039 * 179.73923 * 15 14 13 17 17 O 1.42100 * 104.27755 * 26.05118 * 16 15 14 18 18 O 1.42105 * 104.27628 * 153.90901 * 16 15 14 19 19 C 1.81402 * 104.44935 * 269.98046 * 16 15 14 20 20 F 1.39897 * 109.47186 * 299.99702 * 19 16 15 21 21 F 1.39895 * 109.47207 * 60.00195 * 19 16 15 22 22 C 1.38379 * 120.30268 * 359.72302 * 15 14 13 23 23 C 1.37928 * 120.15273 * 359.97438 * 22 15 14 24 24 C 1.46505 * 119.99863 * 293.21208 * 9 7 2 25 25 C 1.52993 * 117.50299 * 351.44139 * 24 9 7 26 26 C 1.52995 * 117.50155 * 282.78027 * 24 9 7 27 27 H 0.97010 * 120.00026 * 5.02748 * 1 2 3 28 28 H 1.08001 * 120.08007 * 359.97396 * 13 12 10 29 29 H 1.08004 * 119.92299 * 180.24930 * 14 13 12 30 30 H 1.08997 * 109.46808 * 180.02562 * 19 16 15 31 31 H 1.08007 * 119.92262 * 179.97438 * 22 15 14 32 32 H 1.08003 * 120.07890 * 179.97438 * 23 22 15 33 33 H 1.09006 * 115.54401 * 137.11234 * 24 9 7 34 34 H 1.09003 * 117.49787 * 359.97438 * 25 24 9 35 35 H 1.08994 * 117.50340 * 145.01683 * 25 24 9 36 36 H 1.09000 * 117.49943 * 214.98440 * 26 24 9 37 37 H 1.09001 * 117.49840 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7076 1.3463 0.0006 5 1 1.8889 2.3964 -1.2124 6 1 1.8889 2.3964 1.2125 7 6 2.0088 -1.2042 -0.0005 8 1 3.0793 -1.2097 -0.1434 9 7 1.3365 -2.3827 0.1801 10 6 1.2595 -3.2757 -0.8264 11 8 0.7287 -4.3542 -0.6430 12 6 1.8148 -2.9420 -2.1540 13 6 2.0357 -1.6091 -2.5070 14 6 2.5597 -1.3049 -3.7461 15 6 2.8557 -2.3163 -4.6429 16 16 3.5185 -1.9183 -6.2262 17 8 4.1724 -0.6721 -6.0293 18 8 4.2493 -3.0777 -6.6018 19 6 2.0621 -1.7122 -7.2878 20 9 1.3306 -2.9044 -7.3126 21 9 1.2596 -0.6830 -6.7839 22 6 2.6339 -3.6389 -4.3018 23 6 2.1161 -3.9577 -3.0638 24 6 0.7004 -2.6732 1.4675 25 6 0.9889 -1.7202 2.6291 26 6 1.6050 -3.1214 2.6172 27 1 -0.4851 0.8369 -0.0736 28 1 1.8006 -0.8184 -1.8099 29 1 2.7349 -0.2747 -4.0189 30 1 2.3822 -1.4617 -8.2992 31 1 2.8668 -4.4234 -5.0067 32 1 1.9431 -4.9903 -2.7990 33 1 -0.2963 -3.1110 1.4112 34 1 1.6522 -0.8772 2.4356 35 1 0.1822 -1.5312 3.3372 36 1 1.2033 -3.8537 3.3175 37 1 2.6733 -3.2005 2.4156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058289932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:20 Heat of formation + Delta-G solvation = -110.487614 kcal Electronic energy + Delta-G solvation = -28507.244822 eV Core-core repulsion = 24015.482820 eV Total energy + Delta-G solvation = -4491.762003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.068 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -49.45994 -47.61994 -39.62396 -37.90178 -37.53619 -36.42367 -36.09587 -33.89426 -31.60952 -30.76837 -30.41448 -27.82317 -25.55583 -24.17820 -22.33268 -21.51489 -21.05547 -19.84019 -19.60430 -18.52524 -18.38846 -17.88801 -17.64493 -16.91217 -16.30710 -15.80347 -15.56103 -14.90537 -14.67171 -14.42977 -14.36981 -14.18318 -14.08016 -13.87500 -13.74706 -13.34945 -13.05056 -12.97845 -12.63232 -12.51633 -12.42861 -12.35188 -12.15724 -11.61468 -11.41724 -11.24103 -11.03126 -10.71699 -10.69128 -10.63911 -10.43599 -9.82849 -9.49929 -9.11278 -8.91740 -8.71837 -8.56744 -7.35822 -6.61431 -4.57737 -0.73577 0.89155 1.79681 2.25082 2.94962 3.05981 3.07894 3.10577 3.34918 3.47020 3.56758 3.83156 3.83941 4.25797 4.33606 4.40724 4.56277 4.94214 5.16851 5.19131 5.62493 5.70634 5.80590 5.88042 5.91682 6.02630 6.10113 6.27937 6.34166 6.50094 6.62198 6.71299 6.88550 7.02751 7.06681 7.14625 7.38879 7.92063 8.09293 8.71953 9.16136 9.65743 10.37303 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.014826 B = 0.004073 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.168372 B = 6872.632608 C = 7854.981501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.360 4.360 8 H 0.087 0.913 9 N -0.406 5.406 10 C 0.527 3.473 11 O -0.586 6.586 12 C -0.030 4.030 13 C -0.098 4.098 14 C -0.043 4.043 15 C -0.650 4.650 16 S 2.472 3.528 17 O -0.893 6.893 18 O -0.896 6.896 19 C -0.212 4.212 20 F -0.164 7.164 21 F -0.162 7.162 22 C -0.039 4.039 23 C -0.102 4.102 24 C 0.107 3.893 25 C -0.156 4.156 26 C -0.208 4.208 27 H 0.276 0.724 28 H 0.200 0.800 29 H 0.138 0.862 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 0.295 -9.972 10.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.154 4.154 3 Si 0.720 3.280 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.488 4.488 8 H 0.105 0.895 9 N -0.123 5.123 10 C 0.317 3.683 11 O -0.471 6.471 12 C -0.033 4.033 13 C -0.116 4.116 14 C -0.062 4.062 15 C -0.743 4.743 16 S 2.645 3.355 17 O -0.890 6.890 18 O -0.894 6.894 19 C -0.346 4.346 20 F -0.146 7.146 21 F -0.144 7.144 22 C -0.058 4.058 23 C -0.122 4.122 24 C 0.003 3.997 25 C -0.193 4.193 26 C -0.246 4.246 27 H 0.087 0.913 28 H 0.216 0.784 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.352 0.017 -10.097 10.995 hybrid contribution -0.702 0.889 0.154 1.143 sum 3.651 0.906 -9.944 10.631 Atomic orbital electron populations 1.69864 1.06203 1.28624 1.41806 1.25781 0.95422 0.99901 0.94264 0.86329 0.80781 0.81854 0.79005 1.18295 1.19569 1.19793 1.19187 0.92376 0.82621 1.54612 0.89543 1.42519 1.46829 1.15826 1.07170 1.18449 0.81049 0.84787 0.84064 1.90646 1.48344 1.24534 1.83574 1.20477 0.94458 0.94017 0.94385 1.23595 0.92813 0.99413 0.95756 1.21080 0.94047 0.97844 0.93267 1.29682 1.22939 1.01811 1.19846 1.06915 0.76066 0.75836 0.76715 1.93644 1.67784 1.43773 1.83838 1.93631 1.64360 1.48490 1.82891 1.33080 1.06383 0.78563 1.16577 1.93092 1.79522 1.43964 1.97993 1.93109 1.75636 1.57146 1.88479 1.20658 0.94452 0.93661 0.97032 1.21354 0.97981 0.99997 0.92906 1.21377 0.95495 1.01696 0.81163 1.22921 1.02693 0.93679 1.00014 1.23307 0.99782 0.98103 1.03431 0.91331 0.78438 0.84395 0.83340 0.84346 0.84482 0.88055 0.87805 0.90097 0.89970 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.89 13.33 55.50 0.74 -19.15 16 2 C 0.06 1.29 2.83 -17.45 -0.05 1.24 16 3 Si 0.90 17.31 29.40 -169.99 -5.00 12.31 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.36 -8.18 4.52 -15.00 -0.07 -8.25 16 8 H 0.09 1.96 7.74 -52.49 -0.41 1.55 16 9 N -0.41 -9.58 2.57 -108.83 -0.28 -9.86 16 10 C 0.53 12.69 7.51 -12.38 -0.09 12.59 16 11 O -0.59 -15.15 16.50 5.28 0.09 -15.06 16 12 C -0.03 -0.64 5.72 -104.97 -0.60 -1.24 16 13 C -0.10 -1.97 8.52 -39.17 -0.33 -2.31 16 14 C -0.04 -0.74 9.45 -39.64 -0.37 -1.11 16 15 C -0.65 -10.10 5.65 -39.48 -0.22 -10.32 16 16 S 2.47 30.19 5.39 -107.50 -0.58 29.61 16 17 O -0.89 -12.54 17.11 -57.54 -0.98 -13.52 16 18 O -0.90 -12.09 17.11 -57.54 -0.98 -13.07 16 19 C -0.21 -2.14 5.94 101.05 0.60 -1.54 16 20 F -0.16 -1.94 17.37 2.25 0.04 -1.90 16 21 F -0.16 -2.01 17.37 2.25 0.04 -1.97 16 22 C -0.04 -0.61 9.45 -39.64 -0.37 -0.98 16 23 C -0.10 -1.87 9.59 -39.17 -0.38 -2.25 16 24 C 0.11 2.38 5.50 -67.93 -0.37 2.01 16 25 C -0.16 -3.05 9.52 -26.70 -0.25 -3.31 16 26 C -0.21 -3.93 10.46 -26.70 -0.28 -4.21 16 27 H 0.28 6.22 8.32 -40.82 -0.34 5.88 16 28 H 0.20 4.27 3.25 -52.49 -0.17 4.10 16 29 H 0.14 2.07 7.56 -52.48 -0.40 1.68 16 30 H 0.15 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.14 1.77 7.56 -52.48 -0.40 1.38 16 32 H 0.14 2.38 7.78 -52.48 -0.41 1.97 16 33 H 0.10 2.34 8.10 -51.93 -0.42 1.92 16 34 H 0.10 2.15 6.62 -51.93 -0.34 1.81 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -29.57 341.64 -7.94 -37.51 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -3.37 Total: 9.62 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -2.80 Total: -19.67 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: 0.46 Total: -29.00 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.88 Total: -41.66 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.08 Total: -3.87 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.00 Total: 12.31 kcal Atomic # 16 Polarization: 30.19 SS G_CDS: -0.58 Total: 29.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.57 -7.94 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.977 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds