Wall clock time and date at job start Tue Mar 31 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35971 * 117.00217 * 2 1 4 4 C 1.38548 * 120.08186 * 0.02562 * 3 2 1 5 5 C 1.38249 * 120.01992 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.17309 * 359.97438 * 5 4 3 7 7 C 1.38198 * 120.16448 * 359.78904 * 6 5 4 8 8 C 1.38722 * 119.98327 * 0.46555 * 7 6 5 9 9 N 1.40123 * 120.08668 * 179.79465 * 8 7 6 10 10 C 1.46765 * 124.34499 * 269.91860 * 9 8 7 11 11 C 1.54483 * 105.53495 * 163.21438 * 10 9 8 12 12 H 1.08995 * 110.96870 * 267.08854 * 11 10 9 13 13 C 1.50691 * 110.97027 * 143.32284 * 11 10 9 14 14 O 1.21300 * 120.00106 * 6.17141 * 13 11 10 15 15 N 1.34776 * 120.00103 * 186.16650 * 13 11 10 16 16 C 1.37101 * 119.99974 * 180.02562 * 15 13 11 17 17 H 1.08000 * 120.00136 * 132.11077 * 16 15 13 18 18 C 1.38956 * 119.99926 * 312.10340 * 16 15 13 19 19 N 1.31410 * 119.99591 * 164.31483 * 18 16 15 20 20 Si 1.86792 * 120.00137 * 344.31265 * 18 16 15 21 21 H 1.48498 * 109.47240 * 92.80199 * 20 18 16 22 22 H 1.48493 * 109.47491 * 212.80524 * 20 18 16 23 23 H 1.48508 * 109.47378 * 332.80750 * 20 18 16 24 24 C 1.46501 * 120.00210 * 0.02562 * 15 13 11 25 25 C 1.52995 * 117.50228 * 188.14777 * 24 15 13 26 26 C 1.52999 * 117.49805 * 119.48838 * 24 15 13 27 27 C 1.54632 * 101.76382 * 25.20852 * 11 10 9 28 28 C 1.34413 * 124.35399 * 89.74215 * 9 8 7 29 29 O 1.21301 * 124.94445 * 0.43507 * 28 9 8 30 30 H 1.09003 * 109.47345 * 300.00296 * 1 2 3 31 31 H 1.08999 * 109.47567 * 59.99831 * 1 2 3 32 32 H 1.08996 * 109.47490 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.99271 * 0.02562 * 4 3 2 34 34 H 1.07995 * 119.91654 * 180.02562 * 5 4 3 35 35 H 1.08003 * 119.91498 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.00586 * 180.23427 * 7 6 5 37 37 H 1.09002 * 110.39051 * 44.10281 * 10 9 8 38 38 H 1.08997 * 110.03978 * 282.13991 * 10 9 8 39 39 H 0.97003 * 119.99855 * 180.02562 * 19 18 16 40 40 H 1.08999 * 115.54640 * 333.82381 * 24 15 13 41 41 H 1.09003 * 117.49952 * 0.02562 * 25 24 15 42 42 H 1.09005 * 117.49779 * 145.02041 * 25 24 15 43 43 H 1.08999 * 117.49538 * 214.98164 * 26 24 15 44 44 H 1.09001 * 117.50135 * 359.97438 * 26 24 15 45 45 H 1.09004 * 110.48651 * 216.52953 * 27 11 10 46 46 H 1.08992 * 110.60224 * 93.93489 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9224 3.6057 0.0011 6 6 3.3032 3.6807 0.0016 7 6 4.0614 2.5252 0.0060 8 6 3.4372 1.2864 0.0001 9 7 4.2039 0.1135 0.0002 10 6 4.6605 -0.5773 -1.2115 11 6 5.7904 -1.5232 -0.7475 12 1 6.7643 -1.0428 -0.8412 13 6 5.7555 -2.8209 -1.5127 14 8 4.9831 -2.9591 -2.4377 15 7 6.5827 -3.8281 -1.1694 16 6 6.5513 -5.0086 -1.8659 17 1 7.4716 -5.4578 -2.2089 18 6 5.3354 -5.6271 -2.1304 19 7 5.2631 -6.5709 -3.0419 20 14 3.8040 -5.1170 -1.1904 21 1 3.0837 -4.0647 -1.9514 22 1 2.9169 -6.2945 -1.0129 23 1 4.1940 -4.5859 0.1405 24 6 7.5153 -3.6615 -0.0519 25 6 8.5563 -4.7606 0.1693 26 6 7.3758 -4.6189 1.1334 27 6 5.4242 -1.7468 0.7381 28 6 4.6184 -0.5216 1.1100 29 8 4.3771 -0.1670 2.2446 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.2148 2.3195 0.0014 34 1 1.3339 4.5112 0.0019 35 1 3.7903 4.6446 0.0024 36 1 5.1396 2.5868 0.0102 37 1 5.0437 0.1408 -1.9365 38 1 3.8419 -1.1518 -1.6448 39 1 4.4142 -7.0025 -3.2268 40 1 7.8135 -2.6353 0.1624 41 1 8.5476 -5.6076 -0.5168 42 1 9.5395 -4.4575 0.5296 43 1 7.5828 -4.2225 2.1274 44 1 6.5899 -5.3724 1.0819 45 1 6.3255 -1.8100 1.3478 46 1 4.8227 -2.6484 0.8533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058291035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:16 Heat of formation + Delta-G solvation = -17.487721 kcal Electronic energy + Delta-G solvation = -31321.582346 eV Core-core repulsion = 27178.881536 eV Total energy + Delta-G solvation = -4142.700810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.07302 -39.89185 -38.81516 -37.48644 -36.64083 -35.87319 -33.23251 -32.88131 -31.43609 -30.41755 -29.35447 -27.47841 -27.38189 -25.46350 -23.25092 -22.52025 -22.31995 -21.88558 -21.09980 -19.96694 -19.04907 -18.22251 -17.42039 -17.15830 -16.58313 -16.30483 -15.94734 -15.60081 -15.27777 -15.15923 -14.74999 -14.54868 -14.15716 -14.07445 -13.85821 -13.65414 -13.23153 -13.13709 -12.89253 -12.84713 -12.73025 -12.36503 -12.25550 -11.85339 -11.57934 -11.46442 -11.30161 -11.28162 -11.21754 -10.98856 -10.76268 -10.32227 -10.17882 -10.00792 -9.84966 -9.69259 -9.08687 -8.82089 -8.67540 -8.57989 -8.32900 -7.49643 -6.26517 -4.09351 1.01576 1.22801 2.68876 2.95536 3.16046 3.20110 3.37305 3.47988 3.56023 3.62852 4.16688 4.39893 4.52653 4.58552 4.61697 4.67457 4.76880 4.88734 4.99078 4.99288 5.04307 5.14634 5.15741 5.18880 5.32591 5.35747 5.42301 5.50408 5.55295 5.64147 5.68676 5.74224 5.77088 6.01131 6.02261 6.11935 6.18230 6.23954 6.27320 6.28067 6.45122 6.67067 6.75463 6.85840 7.11285 7.27920 7.77498 7.95175 8.31686 8.68475 8.81585 9.33778 9.70509 10.79360 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003943 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.947502 B = 7099.239172 C = 7975.461838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.137 3.863 4 C -0.206 4.206 5 C -0.077 4.077 6 C -0.153 4.153 7 C -0.071 4.071 8 C 0.116 3.884 9 N -0.572 5.572 10 C 0.122 3.878 11 C -0.117 4.117 12 H 0.110 0.890 13 C 0.469 3.531 14 O -0.536 6.536 15 N -0.432 5.432 16 C -0.344 4.344 17 H 0.097 0.903 18 C 0.095 3.905 19 N -0.866 5.866 20 Si 0.896 3.104 21 H -0.255 1.255 22 H -0.303 1.303 23 H -0.273 1.273 24 C 0.059 3.941 25 C -0.173 4.173 26 C -0.197 4.197 27 C -0.144 4.144 28 C 0.528 3.472 29 O -0.529 6.529 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.273 0.727 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 17.367 6.918 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.090 3.910 4 C -0.225 4.225 5 C -0.095 4.095 6 C -0.171 4.171 7 C -0.090 4.090 8 C 0.026 3.974 9 N -0.303 5.303 10 C 0.001 3.999 11 C -0.139 4.139 12 H 0.128 0.872 13 C 0.258 3.742 14 O -0.417 6.417 15 N -0.153 5.153 16 C -0.470 4.470 17 H 0.114 0.886 18 C -0.115 4.115 19 N -0.500 5.500 20 Si 0.725 3.275 21 H -0.180 1.180 22 H -0.232 1.232 23 H -0.199 1.199 24 C -0.046 4.046 25 C -0.211 4.211 26 C -0.235 4.235 27 C -0.184 4.184 28 C 0.317 3.683 29 O -0.405 6.405 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.129 0.871 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.299 17.150 6.907 18.982 hybrid contribution -1.039 0.180 0.425 1.137 sum -5.337 17.330 7.332 19.560 Atomic orbital electron populations 1.23107 0.78323 1.04319 1.01134 1.86222 1.21360 1.26192 1.87895 1.19400 0.91576 0.84948 0.95087 1.21164 1.00117 0.91929 1.09328 1.20986 0.94684 0.96904 0.96901 1.20939 0.93763 0.98026 1.04413 1.21192 1.00437 0.90534 0.96886 1.16729 0.86411 0.86158 1.08135 1.45519 1.52229 1.24174 1.08338 1.22098 0.97633 0.94530 0.85678 1.22226 1.00170 0.96755 0.94795 0.87232 1.19787 0.85025 0.83981 0.85422 1.90594 1.39373 1.81101 1.30613 1.43060 1.33395 1.12506 1.26301 1.18724 0.95376 0.98800 1.34067 0.88556 1.25312 0.98784 0.93366 0.93992 1.69711 1.27130 1.24912 1.28281 0.86624 0.83093 0.77891 0.79892 1.17985 1.23164 1.19860 1.21920 0.97215 0.94740 0.90756 1.23142 0.92747 1.02230 1.02969 1.23281 1.01818 1.04501 0.93947 1.22481 1.02078 0.97715 0.96101 1.21041 0.78982 0.84307 0.83946 1.90689 1.58948 1.69918 1.20981 0.92642 0.92496 0.88042 0.85047 0.85488 0.85336 0.84952 0.89854 0.88844 0.91733 0.87084 0.87172 0.89513 0.89447 0.88457 0.87139 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.27 16 2 O -0.30 -4.74 10.24 -19.65 -0.20 -4.94 16 3 C 0.14 2.00 6.70 -39.07 -0.26 1.74 16 4 C -0.21 -2.30 9.04 -39.46 -0.36 -2.66 16 5 C -0.08 -0.73 10.04 -39.56 -0.40 -1.13 16 6 C -0.15 -1.51 10.04 -39.58 -0.40 -1.91 16 7 C -0.07 -0.87 9.96 -39.42 -0.39 -1.26 16 8 C 0.12 1.76 5.40 -83.49 -0.45 1.31 16 9 N -0.57 -9.39 2.70 -112.12 -0.30 -9.69 16 10 C 0.12 2.00 6.60 -3.12 -0.02 1.98 16 11 C -0.12 -1.95 2.60 -90.14 -0.23 -2.18 16 12 H 0.11 1.47 7.72 -51.93 -0.40 1.07 16 13 C 0.47 10.34 5.17 -10.99 -0.06 10.28 16 14 O -0.54 -13.93 11.64 5.54 0.06 -13.87 16 15 N -0.43 -9.67 2.42 -107.73 -0.26 -9.93 16 16 C -0.34 -9.17 8.45 -14.93 -0.13 -9.29 16 17 H 0.10 2.71 7.15 -52.49 -0.38 2.33 16 18 C 0.09 2.69 4.93 -17.47 -0.09 2.60 16 19 N -0.87 -25.76 13.96 55.50 0.77 -24.98 16 20 Si 0.90 23.25 24.96 -169.99 -4.24 19.01 16 21 H -0.25 -6.94 6.43 56.52 0.36 -6.57 16 22 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 23 H -0.27 -6.70 6.19 56.52 0.35 -6.35 16 24 C 0.06 1.03 4.72 -67.93 -0.32 0.71 16 25 C -0.17 -2.82 9.84 -26.70 -0.26 -3.08 16 26 C -0.20 -3.23 10.28 -26.70 -0.27 -3.51 16 27 C -0.14 -2.36 5.16 -26.74 -0.14 -2.50 16 28 C 0.53 9.41 7.99 -10.86 -0.09 9.32 16 29 O -0.53 -10.85 17.71 5.54 0.10 -10.75 16 30 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.80 7.06 -51.93 -0.37 1.44 16 39 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.11 1.58 6.12 -51.93 -0.32 1.26 16 41 H 0.11 2.07 6.59 -51.93 -0.34 1.73 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 45 H 0.11 1.53 7.02 -51.93 -0.36 1.16 16 46 H 0.11 2.10 6.98 -51.93 -0.36 1.73 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -35.47 373.54 -7.58 -43.05 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.26 Total: 4.81 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.87 Total: 1.68 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.21 Total: -44.61 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.04 Total: -29.56 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.24 Total: 19.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.47 -7.58 -43.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058291035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.559 kcal (2) G-P(sol) polarization free energy of solvation -35.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds