Wall clock time and date at job start Tue Mar 31 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35982 * 116.99961 * 2 1 4 4 C 1.38546 * 120.08023 * 0.23413 * 3 2 1 5 5 C 1.38247 * 120.01497 * 180.29724 * 4 3 2 6 6 C 1.38272 * 120.17329 * 359.72416 * 5 4 3 7 7 C 1.38202 * 120.17178 * 0.02562 * 6 5 4 8 8 C 1.38724 * 119.97756 * 359.97438 * 7 6 5 9 9 N 1.40120 * 120.08842 * 180.02562 * 8 7 6 10 10 C 1.46819 * 124.33587 * 269.93594 * 9 8 7 11 11 C 1.54479 * 105.44642 * 196.99929 * 10 9 8 12 12 H 1.08997 * 110.97127 * 92.76611 * 11 10 9 13 13 C 1.50705 * 110.96792 * 216.49298 * 11 10 9 14 14 O 1.21286 * 120.00154 * 25.25882 * 13 11 10 15 15 N 1.34779 * 119.99591 * 205.26087 * 13 11 10 16 16 C 1.37101 * 119.99578 * 184.61654 * 15 13 11 17 17 H 1.08003 * 119.99824 * 222.83461 * 16 15 13 18 18 C 1.38943 * 120.00437 * 42.83443 * 16 15 13 19 19 N 1.31417 * 120.00198 * 23.02725 * 18 16 15 20 20 Si 1.86795 * 120.00181 * 203.03005 * 18 16 15 21 21 H 1.48497 * 109.47300 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47114 * 299.99797 * 20 18 16 23 23 H 1.48506 * 109.47386 * 59.99996 * 20 18 16 24 24 C 1.46500 * 120.00390 * 4.61115 * 15 13 11 25 25 C 1.52996 * 117.50195 * 183.26791 * 24 15 13 26 26 C 1.53000 * 117.49646 * 114.61046 * 24 15 13 27 27 C 1.54629 * 101.79851 * 334.62490 * 11 10 9 28 28 C 1.34422 * 124.35238 * 89.97100 * 9 8 7 29 29 O 1.21303 * 124.93898 * 359.62791 * 28 9 8 30 30 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47323 * 299.99858 * 1 2 3 32 32 H 1.08999 * 109.47203 * 59.99721 * 1 2 3 33 33 H 1.08003 * 119.99847 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.91312 * 179.74297 * 5 4 3 35 35 H 1.08001 * 119.91475 * 179.97438 * 6 5 4 36 36 H 1.07993 * 120.00805 * 179.97438 * 7 6 5 37 37 H 1.08998 * 110.23847 * 78.01598 * 10 9 8 38 38 H 1.09001 * 110.28380 * 315.99813 * 10 9 8 39 39 H 0.97000 * 119.99324 * 5.54220 * 19 18 16 40 40 H 1.08999 * 115.54723 * 328.94707 * 24 15 13 41 41 H 1.09001 * 117.49583 * 0.02562 * 25 24 15 42 42 H 1.08999 * 117.49850 * 145.01755 * 25 24 15 43 43 H 1.09002 * 117.50040 * 214.98455 * 26 24 15 44 44 H 1.09001 * 117.49935 * 0.02562 * 26 24 15 45 45 H 1.09000 * 110.48725 * 143.45722 * 27 11 10 46 46 H 1.09003 * 110.48798 * 266.10656 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2933 2.3746 0.0049 5 6 1.9223 3.6057 -0.0013 6 6 3.3030 3.6807 -0.0067 7 6 4.0614 2.5253 -0.0064 8 6 3.4372 1.2865 -0.0002 9 7 4.2038 0.1136 0.0007 10 6 4.6513 -0.5841 -1.2111 11 6 5.0594 -1.9990 -0.7443 12 1 4.2256 -2.6952 -0.8345 13 6 6.2581 -2.4951 -1.5111 14 8 7.0328 -1.7030 -2.0045 15 7 6.4692 -3.8192 -1.6487 16 6 7.6080 -4.2714 -2.2638 17 1 7.5528 -5.0863 -2.9705 18 6 8.8331 -3.6815 -1.9781 19 7 9.0042 -3.0379 -0.8452 20 14 10.2369 -3.8030 -3.2044 21 1 11.4267 -3.0957 -2.6666 22 1 10.5715 -5.2315 -3.4338 23 1 9.8285 -3.1780 -4.4881 24 6 5.4820 -4.7751 -1.1410 25 6 5.8145 -6.2638 -1.2587 26 6 4.7481 -5.6435 -2.1647 27 6 5.4157 -1.7517 0.7400 28 6 4.6234 -0.5175 1.1109 29 8 4.3989 -0.1510 2.2452 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.2147 2.3195 0.0091 34 1 1.3338 4.5112 -0.0017 35 1 3.7900 4.6446 -0.0119 36 1 5.1396 2.5870 -0.0110 37 1 5.5071 -0.0697 -1.6482 38 1 3.8378 -0.6455 -1.9340 39 1 8.3037 -3.0426 -0.1742 40 1 4.9235 -4.4520 -0.2625 41 1 6.7680 -6.5320 -1.7136 42 1 5.4746 -6.9203 -0.4578 43 1 3.7068 -5.8922 -1.9596 44 1 5.0001 -5.5039 -3.2160 45 1 5.1095 -2.5999 1.3523 46 1 6.4842 -1.5665 0.8501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058291036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:22 Heat of formation + Delta-G solvation = -26.888914 kcal Electronic energy + Delta-G solvation = -30931.589755 eV Core-core repulsion = 26788.481279 eV Total energy + Delta-G solvation = -4143.108476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.97098 -39.76204 -38.65825 -37.46757 -36.53611 -35.71484 -33.27101 -32.76860 -30.84474 -30.36301 -29.21990 -27.40415 -27.37438 -25.16745 -23.20025 -22.34856 -22.28266 -21.77994 -21.26363 -19.85333 -19.07289 -18.20362 -17.33910 -17.04582 -16.68212 -16.29900 -15.93894 -15.32207 -15.20288 -14.84755 -14.71880 -14.38678 -14.23920 -13.83952 -13.78708 -13.67452 -13.35518 -13.22674 -12.79489 -12.70535 -12.52454 -12.29377 -11.87979 -11.78217 -11.70504 -11.31710 -11.29901 -11.05296 -10.89378 -10.80693 -10.73700 -10.28924 -10.12469 -9.92351 -9.79141 -9.74906 -9.03149 -8.76685 -8.66629 -8.32870 -8.19623 -7.43587 -6.46826 -3.96599 1.06713 1.26201 2.78870 3.00395 3.16493 3.38097 3.48992 3.52702 3.63820 3.72407 4.20721 4.51041 4.61572 4.62932 4.70088 4.73531 4.89474 4.92983 4.96638 5.03475 5.18087 5.23138 5.26349 5.28947 5.31670 5.41009 5.44662 5.58335 5.62370 5.63842 5.79677 5.84645 5.91486 6.03744 6.10504 6.13475 6.19609 6.30082 6.31213 6.35374 6.50391 6.59903 6.80421 6.81510 7.18180 7.30190 7.80526 8.30929 8.41383 8.69494 9.06467 9.46425 9.96183 10.82428 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014686 B = 0.003391 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.099240 B = 8255.109477 C = 9230.530062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.134 3.866 4 C -0.206 4.206 5 C -0.078 4.078 6 C -0.150 4.150 7 C -0.070 4.070 8 C 0.119 3.881 9 N -0.571 5.571 10 C 0.125 3.875 11 C -0.115 4.115 12 H 0.098 0.902 13 C 0.473 3.527 14 O -0.535 6.535 15 N -0.424 5.424 16 C -0.428 4.428 17 H 0.073 0.927 18 C 0.042 3.958 19 N -0.844 5.844 20 Si 1.075 2.925 21 H -0.281 1.281 22 H -0.289 1.289 23 H -0.285 1.285 24 C 0.063 3.937 25 C -0.171 4.171 26 C -0.202 4.202 27 C -0.135 4.135 28 C 0.531 3.469 29 O -0.532 6.532 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.270 0.730 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.577 6.239 0.618 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.218 6.218 3 C 0.087 3.913 4 C -0.226 4.226 5 C -0.096 4.096 6 C -0.169 4.169 7 C -0.090 4.090 8 C 0.029 3.971 9 N -0.301 5.301 10 C 0.003 3.997 11 C -0.138 4.138 12 H 0.116 0.884 13 C 0.260 3.740 14 O -0.414 6.414 15 N -0.144 5.144 16 C -0.554 4.554 17 H 0.090 0.910 18 C -0.171 4.171 19 N -0.475 5.475 20 Si 0.902 3.098 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.042 4.042 25 C -0.209 4.209 26 C -0.241 4.241 27 C -0.176 4.176 28 C 0.321 3.679 29 O -0.408 6.408 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.121 0.879 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.672 7.172 0.691 16.346 hybrid contribution -2.096 -0.550 0.319 2.190 sum -16.768 6.622 1.010 18.057 Atomic orbital electron populations 1.23078 0.78533 1.04068 1.01162 1.86182 1.21143 1.26321 1.88192 1.19340 0.91415 0.84832 0.95748 1.21130 0.99974 0.91950 1.09513 1.20980 0.94657 0.96918 0.97083 1.20966 0.93749 0.98114 1.04065 1.21296 1.00748 0.90644 0.96286 1.16737 0.86321 0.86294 1.07776 1.45490 1.52229 1.24061 1.08342 1.22102 1.00460 0.91347 0.85794 1.22218 0.99679 0.96888 0.95003 0.88389 1.19504 0.86656 0.83246 0.84616 1.90607 1.47341 1.53684 1.49737 1.42935 1.17798 1.02129 1.51566 1.19782 0.85263 1.24146 1.26243 0.90977 1.26179 0.99165 0.93552 0.98227 1.70620 1.35520 1.36954 1.04376 0.83433 0.75190 0.75903 0.75294 1.20650 1.21533 1.21092 1.21794 0.96215 0.88914 0.97310 1.23096 1.00725 0.95026 1.02009 1.23291 0.96338 1.06504 0.97920 1.22238 1.02654 0.96749 0.95947 1.21008 0.78199 0.84865 0.83854 1.90684 1.58745 1.70285 1.21070 0.88167 0.92697 0.92640 0.85117 0.85509 0.85301 0.84783 0.88659 0.90538 0.91953 0.87830 0.87320 0.89650 0.89638 0.88954 0.87910 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.21 10.24 -19.68 -0.20 -4.41 16 3 C 0.13 1.89 6.70 -39.08 -0.26 1.62 16 4 C -0.21 -2.27 9.04 -39.46 -0.36 -2.63 16 5 C -0.08 -0.78 10.04 -39.57 -0.40 -1.18 16 6 C -0.15 -1.65 10.04 -39.58 -0.40 -2.05 16 7 C -0.07 -0.98 9.96 -39.42 -0.39 -1.37 16 8 C 0.12 1.88 5.40 -83.50 -0.45 1.43 16 9 N -0.57 -9.86 2.70 -112.08 -0.30 -10.16 16 10 C 0.12 2.15 6.80 -3.09 -0.02 2.12 16 11 C -0.12 -2.10 2.67 -90.14 -0.24 -2.34 16 12 H 0.10 1.59 6.62 -51.93 -0.34 1.24 16 13 C 0.47 11.00 5.39 -10.98 -0.06 10.94 16 14 O -0.53 -14.65 13.77 5.55 0.08 -14.57 16 15 N -0.42 -9.93 2.61 -107.73 -0.28 -10.21 16 16 C -0.43 -11.24 7.90 -14.93 -0.12 -11.36 16 17 H 0.07 1.87 7.22 -52.48 -0.38 1.49 16 18 C 0.04 1.14 4.23 -17.47 -0.07 1.07 16 19 N -0.84 -24.57 12.47 55.50 0.69 -23.88 16 20 Si 1.07 24.87 29.98 -169.99 -5.10 19.78 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.06 1.19 5.58 -67.93 -0.38 0.81 16 25 C -0.17 -2.94 9.80 -26.70 -0.26 -3.20 16 26 C -0.20 -3.28 10.36 -26.70 -0.28 -3.55 16 27 C -0.14 -2.45 6.41 -26.74 -0.17 -2.62 16 28 C 0.53 10.12 7.99 -10.86 -0.09 10.03 16 29 O -0.53 -11.54 17.71 5.54 0.10 -11.44 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 32 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 33 H 0.13 1.07 6.30 -52.48 -0.33 0.74 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.10 1.82 6.90 -51.93 -0.36 1.46 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.27 7.84 7.38 -40.82 -0.30 7.54 16 40 H 0.10 1.72 6.84 -51.93 -0.35 1.36 16 41 H 0.11 2.10 6.69 -51.93 -0.35 1.75 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 45 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 46 H 0.11 2.30 7.89 -51.93 -0.41 1.89 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -34.82 383.08 -8.42 -43.24 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.22 Total: 6.92 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.95 Total: -1.04 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.11 Total: -44.25 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.03 Total: -30.42 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.10 Total: 19.78 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.82 -8.42 -43.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058291036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.347 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds