Wall clock time and date at job start Tue Mar 31 2020 06:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 110.53452 * 2 1 4 4 C 1.38301 * 119.96454 * 271.37405 * 3 2 1 5 5 C 1.38261 * 120.13844 * 180.02562 * 4 3 2 6 6 C 1.38133 * 120.06907 * 359.97438 * 5 4 3 7 7 C 1.38844 * 119.93384 * 0.02562 * 6 5 4 8 8 N 1.39943 * 120.07233 * 179.97438 * 7 6 5 9 9 C 1.47093 * 125.56238 * 359.97438 * 8 7 6 10 10 C 1.54088 * 103.78384 * 180.02562 * 9 8 7 11 11 O 1.45700 * 104.00768 * 359.97438 * 10 9 8 12 12 C 1.33785 * 109.47304 * 359.73715 * 11 10 9 13 13 O 1.21518 * 123.07199 * 180.26961 * 12 11 10 14 14 C 1.38094 * 119.96496 * 91.65502 * 3 2 1 15 15 N 1.47314 * 110.59752 * 122.82840 * 2 1 3 16 16 C 1.34535 * 106.61542 * 118.68007 * 15 2 1 17 17 O 1.21518 * 123.76852 * 179.97438 * 16 15 2 18 18 N 1.33793 * 112.45768 * 0.02562 * 16 15 2 19 19 C 1.37514 * 124.17605 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99814 * 320.85608 * 19 18 16 21 21 C 1.38888 * 119.99925 * 140.85672 * 19 18 16 22 22 N 1.31382 * 120.00021 * 157.18319 * 21 19 18 23 23 Si 1.86797 * 120.00319 * 337.18507 * 21 19 18 24 24 H 1.48505 * 109.47109 * 95.45010 * 23 21 19 25 25 H 1.48499 * 109.47271 * 215.45558 * 23 21 19 26 26 H 1.48504 * 109.47230 * 335.45694 * 23 21 19 27 27 C 1.34767 * 111.64376 * 359.97438 * 18 16 15 28 28 O 1.21237 * 127.15552 * 180.02562 * 27 18 16 29 29 H 1.08996 * 109.46842 * 59.99545 * 1 2 3 30 30 H 1.08992 * 109.46924 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47029 * 299.99936 * 1 2 3 32 32 H 1.07993 * 119.93185 * 0.04361 * 4 3 2 33 33 H 1.08003 * 119.96412 * 179.97438 * 5 4 3 34 34 H 1.08005 * 120.03506 * 179.97438 * 6 5 4 35 35 H 1.09006 * 110.56301 * 298.57898 * 9 8 7 36 36 H 1.09001 * 110.56471 * 61.42290 * 9 8 7 37 37 H 1.08992 * 110.52392 * 118.63118 * 10 9 8 38 38 H 1.09005 * 110.51919 * 241.36829 * 10 9 8 39 39 H 1.08003 * 120.03530 * 359.97438 * 14 3 2 40 40 H 0.96996 * 126.69072 * 298.71367 * 15 2 1 41 41 H 0.97001 * 120.00185 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.2740 2.0682 -1.1978 5 6 2.7594 3.3628 -1.2020 6 6 3.0303 4.0043 -0.0090 7 6 2.8151 3.3475 1.1952 8 7 3.0890 3.9945 2.4055 9 6 3.6068 5.3641 2.5453 10 6 3.7201 5.5600 4.0695 11 8 3.2585 4.2937 4.6230 12 6 2.9166 3.4695 3.6263 13 8 2.4924 2.3458 3.8110 14 6 2.3329 2.0451 1.1959 15 7 2.0483 -0.7476 1.1587 16 6 2.7628 -1.7752 0.6653 17 8 3.3326 -2.5956 1.3573 18 7 2.7766 -1.7923 -0.6725 19 6 3.4340 -2.7361 -1.4261 20 1 4.4032 -3.0966 -1.1146 21 6 2.8514 -3.2258 -2.5880 22 7 3.6028 -3.7543 -3.5273 23 14 0.9996 -3.1331 -2.8152 24 1 0.6565 -1.9139 -3.5906 25 1 0.5302 -4.3353 -3.5496 26 1 0.3400 -3.0760 -1.4859 27 6 2.0669 -0.7702 -1.1900 28 8 1.8936 -0.5192 -2.3634 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.0624 1.5691 -2.1318 33 1 2.9270 3.8730 -2.1391 34 1 3.4098 5.0155 -0.0130 35 1 4.5858 5.4533 2.0744 36 1 2.9082 6.0831 2.1174 37 1 4.7552 5.7474 4.3548 38 1 3.0781 6.3771 4.3985 39 1 2.1684 1.5300 2.1308 40 1 1.9024 -0.5397 2.0949 41 1 3.1959 -4.0967 -4.3385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058306607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:54 Heat of formation + Delta-G solvation = -49.277051 kcal Electronic energy + Delta-G solvation = -31087.745195 eV Core-core repulsion = 26742.406891 eV Total energy + Delta-G solvation = -4345.338304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.26619 -41.77564 -39.26122 -37.68222 -37.51624 -36.21261 -35.26261 -34.43477 -32.23083 -31.19910 -31.02155 -29.55691 -29.06118 -26.05348 -24.85941 -24.06956 -23.78029 -22.25547 -21.44274 -20.62708 -20.01392 -18.19543 -17.97780 -17.87435 -17.28446 -16.69644 -16.40568 -15.87565 -15.68730 -15.45035 -14.85619 -14.76502 -14.65665 -14.62259 -14.36981 -14.04698 -13.99574 -13.60271 -13.37001 -13.17657 -12.98588 -12.87807 -12.59248 -12.34317 -12.20402 -12.15569 -11.86776 -11.40740 -11.18824 -11.16508 -10.67455 -10.55518 -10.39142 -10.19376 -9.73216 -9.42219 -8.98911 -8.90621 -8.69076 -8.40714 -8.14750 -6.49605 -4.29522 1.13637 1.30789 1.89584 2.40513 2.47580 2.93776 3.23736 3.27489 3.35412 3.39426 3.55594 3.68488 4.04768 4.07375 4.11663 4.15689 4.27249 4.51668 4.65449 4.71636 4.82425 4.89147 4.97289 5.04520 5.07500 5.17629 5.36863 5.44957 5.55014 5.71913 5.75744 5.93618 6.13657 6.17431 6.20591 6.41223 6.44778 6.63258 6.88888 6.99212 7.30821 7.48246 7.60496 7.76262 8.22043 8.45541 8.69048 9.07197 9.46593 10.57255 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.003617 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.077477 B = 7739.227148 C = 8341.161504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.159 3.841 3 C -0.049 4.049 4 C -0.121 4.121 5 C -0.089 4.089 6 C -0.152 4.152 7 C 0.170 3.830 8 N -0.568 5.568 9 C 0.059 3.941 10 C 0.042 3.958 11 O -0.321 6.321 12 C 0.642 3.358 13 O -0.497 6.497 14 C -0.133 4.133 15 N -0.733 5.733 16 C 0.682 3.318 17 O -0.549 6.549 18 N -0.416 5.416 19 C -0.350 4.350 20 H 0.116 0.884 21 C 0.093 3.907 22 N -0.842 5.842 23 Si 0.876 3.124 24 H -0.244 1.244 25 H -0.287 1.287 26 H -0.273 1.273 27 C 0.482 3.518 28 O -0.478 6.478 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.157 0.843 40 H 0.429 0.571 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 24.388 9.204 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.067 3.933 3 C -0.051 4.051 4 C -0.140 4.140 5 C -0.107 4.107 6 C -0.172 4.172 7 C 0.079 3.921 8 N -0.305 5.305 9 C -0.063 4.063 10 C -0.033 4.033 11 O -0.231 6.231 12 C 0.397 3.603 13 O -0.380 6.380 14 C -0.153 4.153 15 N -0.398 5.398 16 C 0.385 3.615 17 O -0.424 6.424 18 N -0.148 5.148 19 C -0.475 4.475 20 H 0.134 0.866 21 C -0.118 4.118 22 N -0.474 5.474 23 Si 0.702 3.298 24 H -0.168 1.168 25 H -0.214 1.214 26 H -0.198 1.198 27 C 0.270 3.730 28 O -0.353 6.353 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.174 0.826 40 H 0.273 0.727 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.504 23.264 9.124 25.234 hybrid contribution -0.761 0.283 0.237 0.846 sum -4.265 23.546 9.361 25.695 Atomic orbital electron populations 1.21977 0.90579 1.03706 1.03741 1.20119 0.96287 0.89742 0.87108 1.19387 0.98868 0.93608 0.93283 1.21546 0.98491 0.94878 0.99049 1.20912 0.98011 0.94541 0.97261 1.20678 1.05498 1.00367 0.90682 1.17211 1.00408 0.92123 0.82383 1.45309 1.64859 1.15345 1.05004 1.22974 1.02448 0.83829 0.97082 1.24354 1.03159 0.84888 0.90909 1.87343 1.78217 1.26286 1.31284 1.18468 0.77803 0.84633 0.79385 1.90975 1.48193 1.15097 1.83759 1.21223 1.01069 0.93022 0.99970 1.45705 1.56144 1.29999 1.07997 1.16436 0.79984 0.81649 0.83421 1.90856 1.48548 1.41583 1.61409 1.42082 1.43628 1.23834 1.05265 1.18949 1.03238 1.20728 1.04572 0.86627 1.25137 0.99285 0.93365 0.94018 1.69716 1.36381 1.35829 1.05500 0.86853 0.84754 0.78627 0.79543 1.16840 1.21402 1.19817 1.20336 0.82267 0.81322 0.89039 1.90609 1.59410 1.69226 1.16079 0.90049 0.91085 0.90764 0.83322 0.84985 0.85748 0.88053 0.88100 0.87081 0.87143 0.82593 0.72746 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.97 37.16 0.33 -1.85 16 2 C 0.16 2.95 1.16 -133.24 -0.16 2.80 16 3 C -0.05 -0.81 4.87 -104.65 -0.51 -1.32 16 4 C -0.12 -1.85 9.18 -39.55 -0.36 -2.22 16 5 C -0.09 -1.05 10.04 -39.61 -0.40 -1.45 16 6 C -0.15 -1.59 9.49 -39.40 -0.37 -1.96 16 7 C 0.17 2.14 6.63 -83.69 -0.56 1.59 16 8 N -0.57 -5.92 3.16 -118.27 -0.37 -6.29 16 9 C 0.06 0.28 6.49 -3.15 -0.02 0.26 16 10 C 0.04 0.16 8.23 37.73 0.31 0.47 16 11 O -0.32 -3.22 11.09 -37.87 -0.42 -3.64 16 12 C 0.64 8.23 8.77 53.71 0.47 8.71 16 13 O -0.50 -8.22 14.75 -19.12 -0.28 -8.50 16 14 C -0.13 -2.02 8.61 -39.39 -0.34 -2.36 16 15 N -0.73 -14.21 5.28 -54.02 -0.29 -14.50 16 16 C 0.68 16.77 8.57 -88.01 -0.75 16.02 16 17 O -0.55 -15.04 17.62 5.35 0.09 -14.94 16 18 N -0.42 -10.90 2.31 -65.57 -0.15 -11.05 16 19 C -0.35 -10.33 9.82 -14.76 -0.15 -10.47 16 20 H 0.12 3.65 8.06 -52.48 -0.42 3.23 16 21 C 0.09 2.71 5.12 -17.50 -0.09 2.62 16 22 N -0.84 -24.83 13.95 55.49 0.77 -24.06 16 23 Si 0.88 22.30 25.04 -169.99 -4.26 18.04 16 24 H -0.24 -6.14 6.31 56.52 0.36 -5.78 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.48 11.24 4.78 -10.56 -0.05 11.19 16 28 O -0.48 -11.73 11.83 5.59 0.07 -11.67 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.15 2.53 5.78 -52.49 -0.30 2.22 16 33 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.12 0.86 7.31 -52.48 -0.38 0.48 16 35 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.16 2.54 4.12 -52.48 -0.22 2.32 16 40 H 0.43 7.21 8.09 -40.82 -0.33 6.88 16 41 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 343.01 15.07 5.17 5.17 Total: -1.00 -37.45 343.01 -6.52 -43.97 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.22 Total: 5.46 kcal Atomic # 6 Polarization: 24.65 SS G_CDS: -2.64 Total: 22.02 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.04 Total: -55.90 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.54 Total: -38.76 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.26 Total: 18.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.45 -6.52 -43.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058306607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.302 kcal (2) G-P(sol) polarization free energy of solvation -37.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds