Wall clock time and date at job start Tue Mar 31 2020 06:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 110.53321 * 2 1 4 4 C 1.38304 * 119.96155 * 88.90400 * 3 2 1 5 5 C 1.38269 * 120.13779 * 180.27799 * 4 3 2 6 6 C 1.38126 * 120.06875 * 359.44396 * 5 4 3 7 7 C 1.38854 * 119.93333 * 0.27746 * 6 5 4 8 8 N 1.39940 * 120.07156 * 179.97438 * 7 6 5 9 9 C 1.47094 * 125.56425 * 359.71750 * 8 7 6 10 10 C 1.54086 * 103.78497 * 179.97438 * 9 8 7 11 11 O 1.45708 * 104.00622 * 0.32114 * 10 9 8 12 12 C 1.33776 * 109.47562 * 359.79220 * 11 10 9 13 13 O 1.21515 * 123.07534 * 180.02562 * 12 11 10 14 14 C 1.38089 * 119.97010 * 268.62358 * 3 2 1 15 15 N 1.47314 * 110.60131 * 237.17371 * 2 1 3 16 16 C 1.34528 * 106.62024 * 241.31824 * 15 2 1 17 17 O 1.21523 * 123.76797 * 180.02562 * 16 15 2 18 18 N 1.33794 * 112.45865 * 359.97438 * 16 15 2 19 19 C 1.37508 * 124.17458 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00292 * 327.08971 * 19 18 16 21 21 C 1.38898 * 119.99659 * 147.09041 * 19 18 16 22 22 N 1.31387 * 119.99645 * 340.11731 * 21 19 18 23 23 Si 1.86801 * 120.00189 * 160.12064 * 21 19 18 24 24 H 1.48502 * 109.47116 * 89.99764 * 23 21 19 25 25 H 1.48496 * 109.47162 * 209.99871 * 23 21 19 26 26 H 1.48502 * 109.46863 * 330.00121 * 23 21 19 27 27 C 1.34765 * 111.64066 * 359.97438 * 18 16 15 28 28 O 1.21240 * 127.15254 * 180.02562 * 27 18 16 29 29 H 1.08996 * 109.47602 * 59.99730 * 1 2 3 30 30 H 1.09000 * 109.46784 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46934 * 299.99331 * 1 2 3 32 32 H 1.08002 * 119.93379 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.96379 * 179.72383 * 5 4 3 34 34 H 1.07996 * 120.03989 * 180.29555 * 6 5 4 35 35 H 1.08997 * 110.56154 * 298.61267 * 9 8 7 36 36 H 1.09005 * 110.56163 * 61.45590 * 9 8 7 37 37 H 1.09002 * 110.70257 * 241.60780 * 10 9 8 38 38 H 1.09001 * 110.34277 * 118.86117 * 10 9 8 39 39 H 1.08002 * 120.03231 * 359.97438 * 14 3 2 40 40 H 0.97001 * 126.68793 * 61.34954 * 15 2 1 41 41 H 0.97007 * 119.99113 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0585 1.4113 0.0000 4 6 2.2793 2.0661 1.1980 5 6 2.7588 3.3630 1.2021 6 6 3.0296 4.0046 0.0093 7 6 2.8145 3.3478 -1.1951 8 7 3.0874 3.9952 -2.4053 9 6 3.5980 5.3675 -2.5453 10 6 3.7134 5.5627 -4.0694 11 8 3.2530 4.2959 -4.6230 12 6 2.9196 3.4685 -3.6261 13 8 2.5032 2.3419 -3.8106 14 6 2.3274 2.0472 -1.1959 15 7 2.0483 -0.7475 -1.1587 16 6 2.7628 -1.7751 -0.6654 17 8 3.3327 -2.5954 -1.3576 18 7 2.7767 -1.7923 0.6723 19 6 3.4333 -2.7368 1.4258 20 1 3.5183 -3.7513 1.0656 21 6 3.9871 -2.3859 2.6504 22 7 4.2378 -1.1248 2.9207 23 14 4.3755 -3.7068 3.9127 24 1 5.7623 -4.1962 3.7064 25 1 4.2492 -3.1385 5.2788 26 1 3.4238 -4.8360 3.7564 27 6 2.0678 -0.7697 1.1899 28 8 1.8955 -0.5182 2.3634 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.0722 1.5652 2.1321 33 1 2.9260 3.8733 2.1392 34 1 3.4086 5.0158 0.0132 35 1 2.8949 6.0830 -2.1189 36 1 4.5758 5.4622 -2.0729 37 1 4.7478 5.7516 -4.3565 38 1 3.0697 6.3792 -4.3967 39 1 2.1594 1.5335 -2.1310 40 1 1.9031 -0.5391 -2.0949 41 1 4.6249 -0.8798 3.7758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058306609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:59 Heat of formation + Delta-G solvation = -53.726260 kcal Electronic energy + Delta-G solvation = -31114.356078 eV Core-core repulsion = 26768.824842 eV Total energy + Delta-G solvation = -4345.531236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.12385 -41.37281 -39.03485 -37.50654 -37.08034 -35.96619 -35.00148 -34.15352 -31.89143 -31.02559 -30.70391 -29.37102 -28.85848 -25.80214 -24.71420 -23.92444 -23.56347 -21.91480 -21.29625 -20.59238 -19.80013 -18.01570 -17.76162 -17.56269 -17.12720 -16.55976 -15.98568 -15.66249 -15.30057 -15.12580 -14.82984 -14.51747 -14.49160 -14.42636 -14.22752 -13.81753 -13.74696 -13.51048 -13.37886 -13.03966 -12.78035 -12.47937 -12.20455 -12.01649 -11.92134 -11.72971 -11.49362 -11.18782 -11.07975 -11.00439 -10.78970 -10.39139 -10.36987 -10.21990 -9.59418 -9.24202 -8.89034 -8.68788 -8.49823 -7.95701 -7.88818 -6.39589 -4.14735 1.36287 1.52910 2.03395 2.55428 2.98292 3.06203 3.23010 3.28355 3.33280 3.61645 3.66304 3.90839 4.19715 4.23020 4.25120 4.44290 4.54658 4.72723 4.79375 4.86293 4.99157 5.11620 5.16044 5.24004 5.29552 5.46806 5.58105 5.68208 5.77650 5.89777 5.97346 6.14670 6.30876 6.35257 6.42979 6.69456 6.72132 6.89542 7.06662 7.19628 7.47861 7.70729 7.74095 8.00079 8.24842 8.75811 9.07578 9.22642 9.83391 10.69798 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.003595 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.961039 B = 7786.140593 C = 8333.408541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.156 3.844 3 C -0.048 4.048 4 C -0.108 4.108 5 C -0.092 4.092 6 C -0.154 4.154 7 C 0.165 3.835 8 N -0.567 5.567 9 C 0.060 3.940 10 C 0.042 3.958 11 O -0.323 6.323 12 C 0.642 3.358 13 O -0.498 6.498 14 C -0.134 4.134 15 N -0.736 5.736 16 C 0.679 3.321 17 O -0.568 6.568 18 N -0.404 5.404 19 C -0.351 4.351 20 H 0.103 0.897 21 C 0.058 3.942 22 N -0.824 5.824 23 Si 0.930 3.070 24 H -0.277 1.277 25 H -0.280 1.280 26 H -0.267 1.267 27 C 0.504 3.496 28 O -0.460 6.460 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.154 0.846 40 H 0.424 0.576 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.777 19.235 -6.959 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 C -0.050 4.050 4 C -0.127 4.127 5 C -0.110 4.110 6 C -0.174 4.174 7 C 0.073 3.927 8 N -0.304 5.304 9 C -0.063 4.063 10 C -0.033 4.033 11 O -0.233 6.233 12 C 0.396 3.604 13 O -0.381 6.381 14 C -0.154 4.154 15 N -0.401 5.401 16 C 0.383 3.617 17 O -0.445 6.445 18 N -0.136 5.136 19 C -0.477 4.477 20 H 0.121 0.879 21 C -0.153 4.153 22 N -0.457 5.457 23 Si 0.755 3.245 24 H -0.202 1.202 25 H -0.206 1.206 26 H -0.191 1.191 27 C 0.291 3.709 28 O -0.331 6.331 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.172 0.828 40 H 0.267 0.733 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.641 18.370 -6.882 19.951 hybrid contribution 0.499 0.025 0.166 0.526 sum -3.142 18.395 -6.715 19.833 Atomic orbital electron populations 1.21878 0.90921 1.03299 1.03216 1.20230 0.95889 0.89738 0.87759 1.19463 0.98582 0.93848 0.93061 1.21564 0.97510 0.94409 0.99247 1.20888 0.98353 0.94747 0.97044 1.20629 1.05778 1.00245 0.90761 1.17200 1.00933 0.92288 0.82230 1.45296 1.65085 1.14987 1.05045 1.22952 1.02492 0.83901 0.96973 1.24343 1.03061 0.84895 0.90999 1.87331 1.78490 1.26089 1.31372 1.18463 0.77842 0.84661 0.79407 1.90973 1.48465 1.14890 1.83768 1.21209 1.01241 0.92977 1.00005 1.45681 1.56910 1.29625 1.07838 1.16421 0.79644 0.81970 0.83670 1.90813 1.49463 1.42414 1.61853 1.41776 1.41505 1.26030 1.04284 1.19353 1.36995 0.90475 1.00861 0.87928 1.25309 0.94316 0.96907 0.98763 1.69936 1.35539 1.16941 1.23275 0.85919 0.78728 0.80505 0.79352 1.20245 1.20563 1.19108 1.19801 0.79989 0.82856 0.88301 1.90541 1.57160 1.69177 1.16207 0.91389 0.91238 0.90343 0.83162 0.85292 0.86040 0.88171 0.88153 0.87161 0.87230 0.82835 0.73300 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.97 37.15 0.33 -1.80 16 2 C 0.16 3.08 1.16 -133.25 -0.16 2.93 16 3 C -0.05 -0.88 4.87 -104.65 -0.51 -1.39 16 4 C -0.11 -1.93 9.18 -39.55 -0.36 -2.29 16 5 C -0.09 -1.30 10.04 -39.61 -0.40 -1.70 16 6 C -0.15 -1.93 9.49 -39.39 -0.37 -2.30 16 7 C 0.16 2.38 6.63 -83.69 -0.56 1.83 16 8 N -0.57 -6.80 3.16 -118.27 -0.37 -7.17 16 9 C 0.06 0.36 6.49 -3.15 -0.02 0.34 16 10 C 0.04 0.21 8.23 37.72 0.31 0.52 16 11 O -0.32 -3.60 11.09 -37.84 -0.42 -4.02 16 12 C 0.64 9.10 8.77 53.71 0.47 9.57 16 13 O -0.50 -8.92 14.75 -19.12 -0.28 -9.20 16 14 C -0.13 -2.30 8.61 -39.40 -0.34 -2.64 16 15 N -0.74 -15.24 5.29 -54.03 -0.29 -15.52 16 16 C 0.68 17.51 8.57 -88.02 -0.75 16.76 16 17 O -0.57 -16.14 17.62 5.35 0.09 -16.05 16 18 N -0.40 -11.00 2.69 -65.57 -0.18 -11.17 16 19 C -0.35 -10.11 9.46 -14.76 -0.14 -10.25 16 20 H 0.10 2.94 7.91 -52.49 -0.41 2.53 16 21 C 0.06 1.61 4.82 -17.50 -0.08 1.53 16 22 N -0.82 -23.35 11.19 55.49 0.62 -22.73 16 23 Si 0.93 21.26 29.60 -169.99 -5.03 16.23 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 C 0.50 12.46 5.79 -10.56 -0.06 12.40 16 28 O -0.46 -12.05 13.31 5.59 0.07 -11.98 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.15 3.00 5.76 -52.49 -0.30 2.70 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.12 1.07 7.31 -52.49 -0.38 0.69 16 35 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.15 2.78 4.13 -52.49 -0.22 2.56 16 40 H 0.42 7.77 8.09 -40.82 -0.33 7.44 16 41 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -37.34 347.67 -7.34 -44.68 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.16 Total: 8.21 kcal Atomic # 6 Polarization: 26.14 SS G_CDS: -2.64 Total: 23.50 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.22 Total: -56.60 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -0.53 Total: -41.26 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.34 -7.34 -44.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058306609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.044 kcal (2) G-P(sol) polarization free energy of solvation -37.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds