Wall clock time and date at job start Tue Mar 31 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48500 * 109.47077 * 270.00023 * 3 2 1 5 5 H 1.48503 * 109.46759 * 29.99880 * 3 2 1 6 6 H 1.48502 * 109.47236 * 149.99579 * 3 2 1 7 7 C 1.38811 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99953 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00404 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00238 * 184.30500 * 9 7 2 11 11 H 1.09001 * 109.47019 * 185.70853 * 10 9 7 12 12 C 1.50693 * 109.47057 * 65.70159 * 10 9 7 13 13 O 1.21277 * 120.00335 * 340.00292 * 12 10 9 14 14 N 1.34783 * 119.99793 * 159.99902 * 12 10 9 15 15 C 1.46501 * 120.00195 * 180.02562 * 14 12 10 16 16 C 1.50698 * 109.47386 * 180.02562 * 15 14 12 17 17 C 1.38235 * 119.98514 * 269.72985 * 16 15 14 18 18 C 1.38216 * 120.01472 * 179.72718 * 17 16 15 19 19 C 1.38360 * 119.98297 * 0.54171 * 18 17 16 20 20 Cl 1.73599 * 120.01413 * 179.70518 * 19 18 17 21 21 C 1.38357 * 119.96959 * 359.72895 * 19 18 17 22 22 C 1.38212 * 119.98792 * 359.97438 * 21 19 18 23 23 C 1.50698 * 109.47042 * 305.70196 * 10 9 7 24 24 C 1.38236 * 119.99993 * 141.44792 * 23 10 9 25 25 C 1.38240 * 119.99876 * 179.81330 * 24 23 10 26 26 C 1.38238 * 120.00080 * 0.39212 * 25 24 23 27 27 C 1.38234 * 119.99993 * 359.86081 * 26 25 24 28 28 C 1.38240 * 120.00001 * 359.95291 * 27 26 25 29 29 H 0.97001 * 120.00154 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99476 * 4.30732 * 9 7 2 31 31 H 0.97000 * 119.99556 * 0.02562 * 14 12 10 32 32 H 1.09004 * 109.46824 * 300.00382 * 15 14 12 33 33 H 1.09003 * 109.46998 * 60.00031 * 15 14 12 34 34 H 1.08000 * 119.99619 * 359.97438 * 17 16 15 35 35 H 1.07992 * 120.01154 * 180.26766 * 18 17 16 36 36 H 1.07999 * 120.00082 * 179.97438 * 21 19 18 37 37 H 1.08002 * 119.99094 * 179.97438 * 22 21 19 38 38 H 1.08002 * 119.99988 * 359.97438 * 24 23 10 39 39 H 1.08001 * 119.99700 * 180.22915 * 25 24 23 40 40 H 1.07999 * 119.99524 * 179.83410 * 26 25 24 41 41 H 1.07994 * 120.00297 * 179.97438 * 27 26 25 42 42 H 1.07993 * 119.99919 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0549 -3.6550 0.0963 11 1 1.3582 -4.4851 -0.0204 12 6 2.7259 -3.7478 1.4425 13 8 2.9229 -2.7430 2.0924 14 7 3.1071 -4.9475 1.9242 15 6 3.7589 -5.0378 3.2331 16 6 4.0819 -6.4785 3.5351 17 6 3.1633 -7.2674 4.2018 18 6 3.4566 -8.5903 4.4741 19 6 4.6747 -9.1218 4.0891 20 17 5.0471 -10.7812 4.4375 21 6 5.5959 -8.3301 3.4268 22 6 5.2988 -7.0090 3.1497 23 6 3.0975 -3.7178 -0.9900 24 6 4.3365 -4.2717 -0.7277 25 6 5.2916 -4.3328 -1.7253 26 6 5.0103 -3.8326 -2.9829 27 6 3.7731 -3.2739 -3.2438 28 6 2.8167 -3.2163 -2.2473 29 1 -0.4850 0.8400 -0.0004 30 1 0.3576 -2.3893 -0.0629 31 1 2.9498 -5.7511 1.4041 32 1 4.6793 -4.4541 3.2216 33 1 3.0900 -4.6466 3.9998 34 1 2.2144 -6.8511 4.5065 35 1 2.7372 -9.2078 4.9912 36 1 6.5470 -8.7444 3.1264 37 1 6.0181 -6.3908 2.6330 38 1 4.5576 -4.6592 0.2559 39 1 6.2583 -4.7690 -1.5213 40 1 5.7574 -3.8780 -3.7615 41 1 3.5535 -2.8828 -4.2262 42 1 1.8503 -2.7795 -2.4510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058311669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:17 Heat of formation + Delta-G solvation = 30.871268 kcal Electronic energy + Delta-G solvation = -26704.606360 eV Core-core repulsion = 22868.878624 eV Total energy + Delta-G solvation = -3835.727736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.103 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.03965 -39.40589 -38.05391 -36.84447 -34.95964 -34.22782 -32.08421 -31.40309 -31.12257 -30.35590 -29.49519 -26.96655 -25.32856 -23.17419 -23.16249 -22.06418 -21.65658 -21.04497 -19.61420 -17.66481 -17.44637 -16.82472 -16.15862 -15.95533 -15.69006 -15.20791 -14.84001 -14.47481 -14.30117 -14.12472 -13.84169 -13.81161 -13.60944 -13.42215 -13.03813 -12.93089 -12.82318 -12.51117 -12.08580 -11.80785 -11.79008 -11.61660 -11.56200 -11.13366 -10.89965 -10.81370 -10.62298 -10.50390 -10.05484 -9.82297 -9.37671 -9.28524 -9.06523 -8.79969 -8.65510 -8.42310 -8.14367 -7.07240 -5.74260 -3.02764 0.73197 0.96302 1.79761 1.82190 1.91614 3.16712 3.38537 3.49254 3.54299 3.59368 3.80850 4.29177 4.44351 4.47898 4.56270 4.65429 4.98062 5.00397 5.25097 5.28618 5.31841 5.39308 5.45203 5.50434 5.60068 5.66792 5.74557 5.78085 5.84037 5.87517 5.88788 6.02468 6.05951 6.15531 6.27105 6.45039 6.45187 6.56552 6.78303 6.89709 7.00695 7.22060 7.50432 7.83715 7.95637 8.39836 8.94806 9.54257 9.95181 10.32670 11.47849 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.002754 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.167466 B =10163.420422 C =11412.500391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.208 4.208 8 H 0.072 0.928 9 N -0.691 5.691 10 C 0.197 3.803 11 H 0.087 0.913 12 C 0.489 3.511 13 O -0.499 6.499 14 N -0.744 5.744 15 C 0.157 3.843 16 C -0.093 4.093 17 C -0.089 4.089 18 C -0.112 4.112 19 C -0.033 4.033 20 Cl -0.075 7.075 21 C -0.112 4.112 22 C -0.090 4.090 23 C -0.073 4.073 24 C -0.128 4.128 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.129 4.129 28 C -0.070 4.070 29 H 0.254 0.746 30 H 0.391 0.609 31 H 0.394 0.606 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.349 -20.641 3.477 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.339 4.339 8 H 0.090 0.910 9 N -0.328 5.328 10 C 0.080 3.920 11 H 0.104 0.896 12 C 0.273 3.727 13 O -0.369 6.369 14 N -0.402 5.402 15 C 0.033 3.967 16 C -0.093 4.093 17 C -0.108 4.108 18 C -0.131 4.131 19 C -0.060 4.060 20 Cl -0.046 7.046 21 C -0.131 4.131 22 C -0.108 4.108 23 C -0.076 4.076 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.149 4.149 27 C -0.147 4.147 28 C -0.088 4.088 29 H 0.064 0.936 30 H 0.226 0.774 31 H 0.228 0.772 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.579 -19.771 4.014 22.333 hybrid contribution 0.261 0.406 0.034 0.484 sum 9.840 -19.365 4.048 22.096 Atomic orbital electron populations 1.69648 1.05041 1.25688 1.58056 1.24697 0.95440 0.97648 1.02813 0.86207 0.79002 0.83853 0.77333 1.21830 1.21852 1.20656 1.19069 0.91053 0.83057 1.40763 0.91003 1.42307 1.06090 0.99294 1.85140 1.19065 0.92372 0.92082 0.88454 0.89555 1.22732 0.77947 0.82233 0.89772 1.90723 1.51861 1.35068 1.59273 1.46715 1.63779 1.10073 1.19633 1.20110 0.98665 0.90763 0.87126 1.20133 0.94429 0.96268 0.98496 1.21131 0.99532 0.92745 0.97416 1.21070 0.95525 0.95791 1.00702 1.20990 0.96388 0.86084 1.02527 1.98375 1.94566 1.17820 1.93827 1.21064 0.99330 0.93759 0.98921 1.21116 0.96662 0.94449 0.98609 1.20328 0.94887 0.97090 0.95249 1.21210 0.93538 1.00771 0.99173 1.20937 0.98774 1.01496 0.93664 1.21010 0.96950 1.00148 0.96810 1.21123 0.93999 1.00329 0.99275 1.21048 1.00127 0.95786 0.91853 0.93589 0.77364 0.77195 0.90930 0.90863 0.84704 0.84854 0.84862 0.84745 0.86232 0.87065 0.87060 0.86659 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.99 13.06 55.49 0.72 -27.27 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.90 23.35 29.55 -169.99 -5.02 18.33 16 4 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.21 -5.73 7.31 -15.06 -0.11 -5.84 16 8 H 0.07 2.08 7.43 -52.49 -0.39 1.69 16 9 N -0.69 -16.55 4.50 -55.69 -0.25 -16.80 16 10 C 0.20 3.70 3.50 -70.24 -0.25 3.46 16 11 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 12 C 0.49 9.21 5.88 -10.99 -0.06 9.15 16 13 O -0.50 -12.06 15.19 5.56 0.08 -11.98 16 14 N -0.74 -10.00 4.14 -61.47 -0.25 -10.25 16 15 C 0.16 1.90 5.80 -5.19 -0.03 1.87 16 16 C -0.09 -0.88 5.25 -104.63 -0.55 -1.43 16 17 C -0.09 -0.79 9.70 -39.59 -0.38 -1.17 16 18 C -0.11 -0.94 9.83 -39.54 -0.39 -1.33 16 19 C -0.03 -0.29 6.32 -39.49 -0.25 -0.54 16 20 Cl -0.07 -0.62 28.96 -51.86 -1.50 -2.13 16 21 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 22 C -0.09 -0.78 9.70 -39.59 -0.38 -1.16 16 23 C -0.07 -1.30 4.81 -104.62 -0.50 -1.80 16 24 C -0.13 -2.02 9.12 -39.58 -0.36 -2.38 16 25 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 26 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 27 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 28 C -0.07 -1.26 8.78 -39.58 -0.35 -1.61 16 29 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.39 9.82 8.04 -40.82 -0.33 9.49 16 31 H 0.39 4.33 8.42 -40.82 -0.34 3.99 16 32 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.12 1.73 5.70 -52.49 -0.30 1.43 16 39 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.13 2.56 7.66 -52.49 -0.40 2.15 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -33.04 374.48 -10.99 -44.04 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.12 Total: 11.90 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -5.30 Total: -11.49 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.22 Total: -54.32 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.04 -10.99 -44.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058311669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.908 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds