Wall clock time and date at job start Tue Mar 31 2020 05:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00338 * 2 1 4 4 H 1.48494 * 109.47016 * 239.99565 * 3 2 1 5 5 H 1.48495 * 109.47074 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46784 * 120.00026 * 3 2 1 7 7 C 1.38816 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99779 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00368 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.46783 * 34.99043 * 10 9 7 12 12 C 1.50694 * 109.47614 * 154.99572 * 10 9 7 13 13 O 1.21289 * 119.99781 * 0.02562 * 12 10 9 14 14 N 1.34774 * 120.00570 * 179.97438 * 12 10 9 15 15 C 1.46500 * 120.00452 * 179.97438 * 14 12 10 16 16 C 1.50702 * 109.46787 * 180.02562 * 15 14 12 17 17 C 1.38247 * 119.98430 * 269.72260 * 16 15 14 18 18 C 1.38213 * 120.00826 * 179.72957 * 17 16 15 19 19 C 1.38352 * 119.98662 * 0.55412 * 18 17 16 20 20 Cl 1.73606 * 120.01009 * 179.70303 * 19 18 17 21 21 C 1.38354 * 119.97587 * 359.72145 * 19 18 17 22 22 C 1.38209 * 119.98378 * 0.02562 * 21 19 18 23 23 C 1.50703 * 109.47065 * 275.00072 * 10 9 7 24 24 C 1.38235 * 120.00292 * 139.99706 * 23 10 9 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 10 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 319.96999 * 23 10 9 29 29 H 0.97008 * 120.00036 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99906 * 359.97438 * 9 7 2 31 31 H 0.97005 * 119.99611 * 0.02562 * 14 12 10 32 32 H 1.08998 * 109.47079 * 300.00127 * 15 14 12 33 33 H 1.08998 * 109.46777 * 60.00406 * 15 14 12 34 34 H 1.07997 * 119.99500 * 0.02562 * 17 16 15 35 35 H 1.08001 * 120.00939 * 180.27474 * 18 17 16 36 36 H 1.08001 * 120.00711 * 179.97438 * 21 19 18 37 37 H 1.08005 * 119.99182 * 179.97438 * 22 21 19 38 38 H 1.08001 * 119.99730 * 359.97438 * 24 23 10 39 39 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 40 40 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 41 41 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 42 42 H 1.07997 * 120.00455 * 0.02562 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.9686 -3.5506 0.5899 12 6 1.1938 -4.7357 0.6011 13 8 0.0760 -4.4709 0.9903 14 7 1.6627 -5.9950 0.7047 15 6 0.8230 -7.0436 1.2890 16 6 1.5765 -8.3488 1.2888 17 6 1.4786 -9.2029 0.2062 18 6 2.1738 -10.3975 0.2031 19 6 2.9587 -10.7435 1.2886 20 17 3.8262 -12.2473 1.2886 21 6 3.0518 -9.8909 2.3742 22 6 2.3603 -8.6943 2.3739 23 6 2.4162 -4.0300 -1.4149 24 6 3.6536 -4.5800 -1.6925 25 6 3.9821 -4.9227 -2.9908 26 6 3.0728 -4.7163 -4.0113 27 6 1.8348 -4.1676 -3.7335 28 6 1.5071 -3.8228 -2.4355 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.5566 -6.2068 0.3930 32 1 0.5647 -6.7738 2.3130 33 1 -0.0881 -7.1496 0.7002 34 1 0.8625 -8.9345 -0.6393 35 1 2.1008 -11.0627 -0.6446 36 1 3.6641 -10.1607 3.2220 37 1 2.4325 -8.0287 3.2215 38 1 4.3638 -4.7419 -0.8951 39 1 4.9490 -5.3521 -3.2079 40 1 3.3310 -4.9800 -5.0263 41 1 1.1245 -4.0059 -4.5308 42 1 0.5404 -3.3931 -2.2186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058311671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:22 Heat of formation + Delta-G solvation = 21.343195 kcal Electronic energy + Delta-G solvation = -26469.086809 eV Core-core repulsion = 22632.945904 eV Total energy + Delta-G solvation = -3836.140905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.103 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.08501 -39.42248 -38.25728 -36.88113 -34.96337 -34.41955 -32.18427 -31.43823 -31.18036 -30.46188 -29.55552 -27.07031 -25.36784 -23.20494 -23.10437 -22.02063 -21.82371 -21.23812 -19.71908 -17.86184 -17.42844 -16.68922 -16.23614 -16.03930 -15.78556 -15.25189 -15.08340 -14.77883 -14.24397 -14.17582 -13.88257 -13.83586 -13.82129 -13.38067 -13.06957 -12.99481 -12.87482 -12.47702 -12.19213 -11.85675 -11.82838 -11.65789 -11.62329 -11.16188 -11.02538 -10.93124 -10.73278 -10.59599 -10.18252 -9.79711 -9.64619 -9.40955 -9.08515 -8.91319 -8.88059 -8.48229 -8.18241 -7.08137 -5.79596 -3.11544 0.68755 0.93067 1.76718 1.76977 1.86090 3.08904 3.11538 3.42953 3.46629 3.48100 3.67401 4.23733 4.40151 4.40810 4.53003 4.57102 4.93264 4.96454 5.18557 5.25994 5.26863 5.33354 5.38818 5.42737 5.52614 5.62082 5.62227 5.75466 5.82579 5.85300 5.85603 5.96730 6.07019 6.16667 6.21492 6.40559 6.41002 6.51729 6.59826 6.84210 6.95396 7.19127 7.45145 7.63037 7.75339 8.35828 8.62520 9.49192 9.99072 10.37694 11.41466 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.002616 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.104497 B =10700.294917 C =11684.570496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.248 4.248 8 H 0.072 0.928 9 N -0.697 5.697 10 C 0.197 3.803 11 H 0.082 0.918 12 C 0.515 3.485 13 O -0.523 6.523 14 N -0.732 5.732 15 C 0.159 3.841 16 C -0.096 4.096 17 C -0.087 4.087 18 C -0.112 4.112 19 C -0.031 4.031 20 Cl -0.074 7.074 21 C -0.113 4.113 22 C -0.088 4.088 23 C -0.083 4.083 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.132 4.132 27 C -0.125 4.125 28 C -0.080 4.080 29 H 0.258 0.742 30 H 0.397 0.603 31 H 0.399 0.601 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.276 -23.038 -0.630 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.379 4.379 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.082 3.918 11 H 0.100 0.900 12 C 0.301 3.699 13 O -0.396 6.396 14 N -0.387 5.387 15 C 0.036 3.964 16 C -0.097 4.097 17 C -0.105 4.105 18 C -0.131 4.131 19 C -0.058 4.058 20 Cl -0.045 7.045 21 C -0.131 4.131 22 C -0.107 4.107 23 C -0.087 4.087 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.151 4.151 27 C -0.143 4.143 28 C -0.098 4.098 29 H 0.068 0.932 30 H 0.234 0.766 31 H 0.234 0.766 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.563 -22.751 -0.298 23.681 hybrid contribution 0.787 0.685 -0.269 1.078 sum 7.350 -22.066 -0.567 23.265 Atomic orbital electron populations 1.69690 1.05120 1.25992 1.56091 1.24770 0.95491 0.97718 1.02162 0.86253 0.78558 0.83344 0.77905 1.21128 1.21601 1.21120 1.19122 0.90937 0.83499 1.44337 0.91047 1.42242 1.06474 0.98033 1.87071 1.19026 0.95004 0.86715 0.91088 0.90050 1.21356 0.87940 0.82717 0.77900 1.90694 1.19977 1.81288 1.47685 1.46099 1.19176 1.08389 1.65027 1.20140 0.93079 0.83127 1.00059 1.20088 0.98453 0.96487 0.94646 1.21132 0.98395 0.92922 0.98089 1.21073 0.96773 0.97601 0.97630 1.21004 0.98527 0.89214 0.97051 1.98378 1.75570 1.31923 1.98600 1.21069 1.00468 0.93911 0.97685 1.21129 0.95306 0.95861 0.98417 1.20935 0.93881 0.96190 0.97737 1.20971 0.96372 1.00312 0.96572 1.20960 0.98991 1.01441 0.93151 1.20995 0.94432 1.01063 0.98562 1.21116 0.96801 0.99710 0.96703 1.21044 1.00163 0.96612 0.92000 0.93247 0.76615 0.76644 0.90528 0.90578 0.84683 0.84792 0.84785 0.84648 0.86683 0.86887 0.87015 0.86758 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.96 13.06 55.49 0.72 -27.23 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.25 -6.79 9.92 -15.06 -0.15 -6.94 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.70 -17.55 4.24 -55.69 -0.24 -17.79 16 10 C 0.20 3.86 2.90 -70.24 -0.20 3.65 16 11 H 0.08 1.52 7.94 -51.93 -0.41 1.11 16 12 C 0.51 9.39 7.20 -10.99 -0.08 9.31 16 13 O -0.52 -11.68 15.84 5.55 0.09 -11.59 16 14 N -0.73 -9.68 5.45 -61.47 -0.33 -10.02 16 15 C 0.16 1.82 5.80 -5.19 -0.03 1.79 16 16 C -0.10 -0.88 5.25 -104.62 -0.55 -1.43 16 17 C -0.09 -0.74 9.70 -39.59 -0.38 -1.12 16 18 C -0.11 -0.91 9.83 -39.55 -0.39 -1.30 16 19 C -0.03 -0.26 6.32 -39.50 -0.25 -0.51 16 20 Cl -0.07 -0.60 28.96 -51.86 -1.50 -2.10 16 21 C -0.11 -0.90 9.83 -39.55 -0.39 -1.29 16 22 C -0.09 -0.73 9.70 -39.59 -0.38 -1.12 16 23 C -0.08 -1.47 4.71 -104.62 -0.49 -1.96 16 24 C -0.12 -1.81 9.51 -39.59 -0.38 -2.18 16 25 C -0.13 -1.71 10.05 -39.59 -0.40 -2.11 16 26 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 27 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 28 C -0.08 -1.48 9.32 -39.58 -0.37 -1.85 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.40 11.11 6.99 -40.82 -0.29 10.82 16 31 H 0.40 4.51 8.19 -40.82 -0.33 4.17 16 32 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.12 1.41 8.04 -52.49 -0.42 0.98 16 39 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.12 2.58 7.72 -52.49 -0.41 2.18 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -32.44 381.62 -11.07 -43.51 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -5.20 Total: 14.10 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -5.33 Total: -11.87 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.15 Total: -55.04 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.44 -11.07 -43.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058311671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.855 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds