Wall clock time and date at job start Tue Mar 31 2020 07:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46890 * 109.46886 * 2 1 4 4 C 1.46898 * 111.00271 * 301.62519 * 3 2 1 5 5 C 1.50700 * 109.47065 * 293.06451 * 4 3 2 6 6 H 1.08000 * 119.99648 * 3.12737 * 5 4 3 7 7 C 1.37882 * 120.00191 * 183.13200 * 5 4 3 8 8 N 1.31514 * 119.99492 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00094 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47371 * 59.99881 * 9 7 5 11 11 H 1.48503 * 109.47311 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47051 * 299.99817 * 9 7 5 13 13 C 1.46905 * 111.00142 * 65.57818 * 3 2 1 14 14 N 1.46504 * 109.46928 * 85.03810 * 13 3 2 15 15 C 1.33790 * 124.17761 * 89.97633 * 14 13 3 16 16 O 1.21539 * 123.77031 * 0.04179 * 15 14 13 17 17 N 1.34527 * 112.45842 * 180.02562 * 15 14 13 18 18 C 1.47310 * 106.61690 * 0.02562 * 17 15 14 19 19 C 1.52994 * 110.59881 * 241.31355 * 18 17 15 20 20 C 1.53005 * 109.47083 * 57.17184 * 19 18 17 21 21 C 1.50706 * 110.59891 * 118.52448 * 18 17 15 22 22 C 1.38233 * 119.99938 * 330.69719 * 21 18 17 23 23 C 1.38230 * 120.00369 * 179.97438 * 22 21 18 24 24 C 1.38238 * 119.99604 * 359.97438 * 23 22 21 25 25 C 1.38237 * 120.00115 * 359.97438 * 24 23 22 26 26 C 1.38229 * 119.99631 * 0.07180 * 25 24 23 27 27 C 1.34763 * 124.17545 * 270.01566 * 14 13 3 28 28 O 1.21236 * 127.15977 * 0.02562 * 27 14 13 29 29 H 1.08997 * 109.47347 * 57.44233 * 1 2 3 30 30 H 1.09005 * 109.46926 * 177.43909 * 1 2 3 31 31 H 1.09003 * 109.46997 * 297.43709 * 1 2 3 32 32 H 1.09000 * 109.46689 * 240.00036 * 2 1 3 33 33 H 1.08996 * 109.47007 * 120.00175 * 2 1 3 34 34 H 1.08994 * 109.47429 * 53.06497 * 4 3 2 35 35 H 1.09004 * 109.47435 * 173.06670 * 4 3 2 36 36 H 0.97008 * 119.99614 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.46791 * 325.03833 * 13 3 2 38 38 H 1.08994 * 109.47274 * 205.03556 * 13 3 2 39 39 H 0.96997 * 126.69320 * 180.02562 * 17 15 14 40 40 H 1.09001 * 109.47584 * 177.17175 * 19 18 17 41 41 H 1.09000 * 109.47279 * 297.16767 * 19 18 17 42 42 H 1.09006 * 109.46938 * 179.97438 * 20 19 18 43 43 H 1.08996 * 109.46704 * 299.99697 * 20 19 18 44 44 H 1.08996 * 109.46720 * 59.99847 * 20 19 18 45 45 H 1.08003 * 120.00254 * 359.97438 * 22 21 18 46 46 H 1.07998 * 120.00690 * 180.02562 * 23 22 21 47 47 H 1.08005 * 119.99998 * 179.72085 * 24 23 22 48 48 H 1.07996 * 119.99946 * 179.97438 * 25 24 23 49 49 H 1.08007 * 119.99491 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5171 2.1210 -1.1677 5 6 2.1229 1.5466 -2.4224 6 1 2.7726 0.6859 -2.3632 7 6 1.8479 2.1200 -3.6458 8 7 1.0564 3.1678 -3.7177 9 14 2.5982 1.4076 -5.2010 10 1 2.1622 -0.0030 -5.3598 11 1 2.1494 2.1990 -6.3747 12 1 4.0792 1.4601 -5.1050 13 6 1.6605 2.0703 1.2488 14 7 2.6686 1.7812 2.2718 15 6 3.7653 2.5198 2.4760 16 8 4.0408 3.5128 1.8316 17 7 4.5289 2.0406 3.4746 18 6 3.8474 0.8393 3.9868 19 6 3.4692 1.0211 5.4581 20 6 2.5879 2.2627 5.6084 21 6 4.7170 -0.3790 3.8112 22 6 5.6227 -0.4372 2.7686 23 6 6.4208 -1.5544 2.6078 24 6 6.3134 -2.6132 3.4900 25 6 5.4084 -2.5546 4.5333 26 6 4.6098 -1.4377 4.6934 27 6 2.6061 0.7382 3.1228 28 8 1.7383 -0.1062 3.1837 29 1 -0.3634 0.5530 -0.8661 30 1 -0.3633 -1.0267 -0.0459 31 1 -0.3633 0.4735 0.9121 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.4319 2.0313 -1.2143 35 1 1.7914 3.1723 -1.0802 36 1 0.8626 3.5710 -4.5785 37 1 0.6865 1.7188 1.5889 38 1 1.6181 3.1453 1.0740 39 1 5.3651 2.4135 3.7949 40 1 2.9228 0.1437 5.8039 41 1 4.3740 1.1435 6.0534 42 1 2.3180 2.3920 6.6566 43 1 3.1344 3.1401 5.2627 44 1 1.6831 2.1402 5.0131 45 1 5.7070 0.3902 2.0795 46 1 7.1287 -1.5998 1.7934 47 1 6.9337 -3.4880 3.3618 48 1 5.3242 -3.3819 5.2223 49 1 3.9024 -1.3921 5.5083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058406290.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:40 Heat of formation + Delta-G solvation = 1.593799 kcal Electronic energy + Delta-G solvation = -32069.420568 eV Core-core repulsion = 27997.954379 eV Total energy + Delta-G solvation = -4071.466189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.61996 -39.36843 -38.39459 -37.40050 -36.29398 -34.66218 -32.70351 -32.35905 -31.28413 -30.94656 -29.43719 -27.64225 -26.72693 -24.98616 -23.68044 -23.23060 -22.80404 -22.16976 -21.36450 -20.22132 -19.34099 -17.95961 -17.55154 -16.56931 -16.34429 -16.11622 -15.69179 -15.27847 -15.19019 -15.07381 -14.90284 -14.68550 -14.33337 -14.13307 -14.00573 -13.74504 -13.56904 -13.44097 -13.02658 -12.87375 -12.42326 -12.20771 -11.99231 -11.89021 -11.61982 -11.54855 -11.39258 -11.15063 -11.13478 -11.02122 -10.80458 -10.61937 -10.57242 -10.15536 -10.05023 -9.94068 -9.57402 -9.46169 -9.22858 -9.09937 -8.94447 -8.41497 -7.37388 -6.01128 -4.01773 1.00497 1.22255 1.77999 2.43498 3.10841 3.28678 3.35443 3.39234 3.42588 3.53710 4.02367 4.12771 4.38543 4.44505 4.78221 4.80229 4.87673 4.92106 4.96013 5.02578 5.18444 5.26400 5.31352 5.35450 5.44395 5.57044 5.57956 5.69265 5.72229 5.80289 5.82831 5.84986 5.89061 5.93800 6.02006 6.17561 6.23650 6.31600 6.34030 6.46276 6.65911 6.76507 6.84550 6.88189 7.19000 7.31947 7.34447 7.53422 7.77008 8.03759 8.13889 8.34781 8.49385 9.03252 9.61496 11.09713 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.003650 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.589895 B = 7669.920024 C = 8494.962157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.060 3.940 3 N -0.543 5.543 4 C 0.195 3.805 5 C -0.504 4.504 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.274 3.726 14 N -0.559 5.559 15 C 0.707 3.293 16 O -0.528 6.528 17 N -0.724 5.724 18 C 0.166 3.834 19 C -0.114 4.114 20 C -0.159 4.159 21 C -0.094 4.094 22 C -0.092 4.092 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.122 4.122 26 C -0.096 4.096 27 C 0.539 3.461 28 O -0.464 6.464 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.004 0.996 35 H 0.035 0.965 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.436 0.564 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.125 0.875 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.261 -7.983 22.049 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.068 4.068 3 N -0.268 5.268 4 C 0.071 3.929 5 C -0.543 4.543 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.063 3.937 14 N -0.306 5.306 15 C 0.407 3.593 16 O -0.399 6.399 17 N -0.389 5.389 18 C 0.075 3.925 19 C -0.152 4.152 20 C -0.216 4.216 21 C -0.095 4.095 22 C -0.110 4.110 23 C -0.135 4.135 24 C -0.130 4.130 25 C -0.140 4.140 26 C -0.114 4.114 27 C 0.324 3.676 28 O -0.333 6.333 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.022 0.978 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.280 0.720 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.141 0.859 48 H 0.143 0.857 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.238 -7.725 21.428 23.901 hybrid contribution -0.023 -0.210 -0.858 0.884 sum 7.214 -7.935 20.570 23.198 Atomic orbital electron populations 1.22353 0.98830 1.01495 1.01730 1.22031 0.92666 0.90542 1.01578 1.61911 1.60250 1.02654 1.01951 1.19816 0.93989 0.93738 0.85397 1.21030 1.28752 1.14200 0.90294 0.92079 1.24943 0.95359 0.95020 0.99090 1.69941 1.36611 1.21828 1.25352 0.86562 0.79653 0.78905 0.82296 1.20321 1.21348 1.20216 1.22170 0.86588 1.00381 0.84547 1.46719 1.23863 1.26625 1.33364 1.15872 0.80016 0.82967 0.80406 1.91043 1.73146 1.25398 1.50345 1.45625 1.26756 1.28870 1.37633 1.20179 0.90742 0.85412 0.96214 1.21788 1.01552 1.00370 0.91525 1.21842 0.99688 0.97574 1.02526 1.19433 0.97994 0.94598 0.97510 1.21084 0.94858 0.98623 0.96477 1.21175 0.99546 0.93477 0.99316 1.21247 0.98377 0.98456 0.94874 1.21117 0.96434 0.97942 0.98550 1.21027 0.98815 0.92888 0.98710 1.20473 0.86324 0.80425 0.80360 1.90763 1.38331 1.35504 1.68728 0.90894 0.93139 0.93782 0.90116 0.92754 0.97830 0.94670 0.92850 0.90953 0.88019 0.72015 0.89239 0.89585 0.91446 0.91869 0.92660 0.85601 0.85633 0.85913 0.85731 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.48 9.32 37.16 0.35 -3.13 16 2 C 0.06 1.22 5.83 -3.83 -0.02 1.20 16 3 N -0.54 -11.95 4.79 -239.99 -1.15 -13.10 16 4 C 0.19 5.04 4.41 -4.98 -0.02 5.02 16 5 C -0.50 -14.20 8.60 -34.44 -0.30 -14.50 16 6 H 0.06 1.72 7.04 -52.49 -0.37 1.35 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.27 5.19 5.43 -63.31 -0.34 4.85 16 14 N -0.56 -9.35 2.85 -124.03 -0.35 -9.70 16 15 C 0.71 11.57 8.55 -88.02 -0.75 10.82 16 16 O -0.53 -10.75 17.48 5.33 0.09 -10.66 16 17 N -0.72 -8.41 4.04 -54.02 -0.22 -8.62 16 18 C 0.17 1.87 0.95 -133.25 -0.13 1.74 16 19 C -0.11 -0.94 4.61 -26.73 -0.12 -1.06 16 20 C -0.16 -1.38 9.40 37.16 0.35 -1.03 16 21 C -0.09 -1.05 4.94 -104.62 -0.52 -1.57 16 22 C -0.09 -1.10 9.35 -39.59 -0.37 -1.47 16 23 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.11 -1.01 10.05 -39.58 -0.40 -1.41 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 26 C -0.10 -0.92 9.17 -39.59 -0.36 -1.28 16 27 C 0.54 8.09 5.08 -10.56 -0.05 8.03 16 28 O -0.46 -7.79 16.42 5.60 0.09 -7.70 16 29 H 0.07 1.52 6.09 -51.93 -0.32 1.21 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.77 6.30 -51.93 -0.33 0.45 16 32 H 0.08 1.76 6.90 -51.93 -0.36 1.41 16 33 H 0.05 1.07 6.05 -51.93 -0.31 0.76 16 34 H 0.00 0.11 5.86 -51.93 -0.30 -0.20 16 35 H 0.04 1.00 7.76 -51.93 -0.40 0.59 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.07 1.29 5.69 -51.93 -0.30 1.00 16 38 H 0.10 1.99 7.28 -51.93 -0.38 1.61 16 39 H 0.44 3.92 8.96 -40.82 -0.37 3.55 16 40 H 0.09 0.68 6.63 -51.93 -0.34 0.34 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.58 7.59 -51.93 -0.39 0.18 16 44 H 0.05 0.58 7.20 -51.93 -0.37 0.21 16 45 H 0.13 1.67 7.44 -52.48 -0.39 1.28 16 46 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 47 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 48 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 49 H 0.13 0.98 6.20 -52.48 -0.33 0.65 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -33.41 390.87 -10.45 -43.86 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.93 Total: 4.41 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -3.58 Total: 4.66 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.99 Total: -57.37 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.19 Total: -18.36 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.41 -10.45 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058406290.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.450 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds