Wall clock time and date at job start Tue Mar 31 2020 07:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47401 * 237.74182 * 3 2 1 5 5 C 1.37094 * 120.00130 * 272.73194 * 4 3 2 6 6 H 1.07996 * 120.00194 * 187.00263 * 5 4 3 7 7 C 1.38952 * 120.00038 * 6.99660 * 5 4 3 8 8 N 1.31414 * 119.99624 * 25.21021 * 7 5 4 9 9 Si 1.86799 * 120.00195 * 205.21078 * 7 5 4 10 10 H 1.48501 * 109.47063 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47166 * 119.99857 * 9 7 5 12 12 H 1.48503 * 109.47184 * 240.00045 * 9 7 5 13 13 C 1.34778 * 120.00145 * 92.72782 * 4 3 2 14 14 O 1.21292 * 120.00181 * 185.07369 * 13 4 3 15 15 C 1.50699 * 119.99987 * 5.06961 * 13 4 3 16 16 H 1.09007 * 109.53709 * 31.72036 * 15 13 4 17 17 C 1.53119 * 109.50413 * 271.62146 * 15 13 4 18 18 C 1.53122 * 109.16067 * 182.40259 * 17 15 13 19 19 C 1.53043 * 109.27717 * 57.65378 * 18 17 15 20 20 N 1.46843 * 109.52266 * 300.81991 * 19 18 17 21 21 C 1.46902 * 110.99957 * 185.83830 * 20 19 18 22 22 C 1.50702 * 109.47126 * 66.04786 * 21 20 19 23 23 C 1.38264 * 119.98376 * 269.72686 * 22 21 20 24 24 C 1.38225 * 120.04775 * 179.72391 * 23 22 21 25 25 C 1.38228 * 120.02544 * 0.54922 * 24 23 22 26 26 C 1.38436 * 119.97282 * 359.72465 * 25 24 23 27 27 F 1.35102 * 120.02451 * 180.02562 * 26 25 24 28 28 C 1.38170 * 119.98534 * 89.99897 * 22 21 20 29 29 C 1.46850 * 111.19948 * 61.74164 * 20 19 18 30 30 H 1.08998 * 109.47446 * 117.73747 * 3 2 1 31 31 H 1.09001 * 109.47234 * 357.73848 * 3 2 1 32 32 H 0.97002 * 119.99980 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.52098 * 62.50208 * 17 15 13 34 34 H 1.08995 * 109.52261 * 302.30643 * 17 15 13 35 35 H 1.09002 * 109.50659 * 177.59151 * 18 17 15 36 36 H 1.08993 * 109.50346 * 297.67687 * 18 17 15 37 37 H 1.08999 * 109.46084 * 60.83682 * 19 18 17 38 38 H 1.09000 * 109.46265 * 180.80855 * 19 18 17 39 39 H 1.09004 * 109.47130 * 186.04562 * 21 20 19 40 40 H 1.08999 * 109.47010 * 306.04921 * 21 20 19 41 41 H 1.07997 * 119.97934 * 359.97438 * 23 22 21 42 42 H 1.08001 * 119.99093 * 180.27101 * 24 23 22 43 43 H 1.07999 * 120.01484 * 179.70218 * 25 24 23 44 44 H 1.08001 * 120.01693 * 359.97438 * 28 22 21 45 45 H 1.09005 * 109.46165 * 58.27338 * 29 20 19 46 46 H 1.09005 * 109.46516 * 178.23691 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7381 1.1680 5 6 3.2706 2.0960 1.0975 6 1 3.7356 2.6239 1.9169 7 6 2.8494 2.7931 -0.0282 8 7 1.8838 2.3098 -0.7772 9 14 3.6556 4.4173 -0.4770 10 1 4.7086 4.7392 0.5193 11 1 4.2673 4.3103 -1.8260 12 1 2.6322 5.4934 -0.4815 13 6 3.3734 0.0815 2.3119 14 8 3.6889 0.7012 3.3057 15 6 3.2914 -1.4226 2.3562 16 1 3.5558 -1.8310 1.3808 17 6 1.8652 -1.8464 2.7183 18 6 1.8051 -3.3730 2.8200 19 6 2.8177 -3.8501 3.8638 20 7 4.1660 -3.4205 3.4716 21 6 5.1801 -3.9781 4.3765 22 6 5.2221 -5.4765 4.2216 23 6 4.4180 -6.2758 5.0130 24 6 4.4513 -7.6500 4.8681 25 6 5.2969 -8.2273 3.9395 26 6 6.1066 -7.4283 3.1506 27 9 6.9332 -7.9915 2.2423 28 6 6.0682 -6.0513 3.2927 29 6 4.2608 -1.9562 3.4133 30 1 2.9711 0.4791 -0.9095 31 1 2.9718 -1.0260 0.0406 32 1 1.5899 2.7962 -1.5633 33 1 1.1766 -1.5055 1.9452 34 1 1.5864 -1.4063 3.6756 35 1 0.8026 -3.6787 3.1194 36 1 2.0455 -3.8120 1.8518 37 1 2.5679 -3.4217 4.8344 38 1 2.7875 -4.9378 3.9284 39 1 6.1561 -3.5599 4.1301 40 1 4.9262 -3.7262 5.4061 41 1 3.7605 -5.8259 5.7421 42 1 3.8196 -8.2732 5.4837 43 1 5.3263 -9.3013 3.8298 44 1 6.6991 -5.4270 2.6774 45 1 4.0043 -1.5366 4.3861 46 1 5.2789 -1.6683 3.1509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:50 Heat of formation + Delta-G solvation = -10.473548 kcal Electronic energy + Delta-G solvation = -30074.716128 eV Core-core repulsion = 25879.266355 eV Total energy + Delta-G solvation = -4195.449774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -49.06644 -40.04371 -39.23660 -37.72625 -35.77677 -34.35440 -33.95700 -31.93393 -31.24197 -30.92548 -30.38674 -27.46425 -26.53612 -25.30363 -23.51847 -23.00516 -22.74959 -21.48534 -20.04129 -18.80208 -17.96366 -17.44037 -16.63419 -16.54090 -16.44419 -16.21700 -15.90181 -15.64074 -14.89398 -14.72807 -14.45524 -14.17877 -14.12347 -13.89715 -13.73752 -13.47924 -13.15561 -12.95819 -12.86906 -12.60895 -12.39323 -12.24136 -12.02461 -11.88989 -11.72887 -11.59939 -11.34956 -11.20573 -11.13834 -11.06518 -10.69982 -10.66009 -10.41258 -10.37153 -10.17907 -10.07448 -9.25738 -9.21882 -8.91841 -8.53491 -8.27489 -8.13872 -6.55014 -3.96616 0.89423 0.97858 3.06150 3.20996 3.25389 3.28561 3.53286 3.76240 3.97907 4.03989 4.04785 4.15548 4.42509 4.54663 4.75175 4.79721 4.84448 4.94015 4.95512 5.06103 5.10251 5.18660 5.24297 5.29825 5.39005 5.47912 5.57649 5.61459 5.63221 5.73897 5.81213 5.87769 5.90255 5.91588 6.03443 6.03771 6.08405 6.17759 6.26387 6.27292 6.43844 6.53858 6.60468 6.65230 7.06171 7.10787 7.44530 7.85017 8.26119 8.81839 8.98226 9.18895 9.72197 10.49951 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017856 B = 0.002483 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.763868 B =11274.188932 C =11536.561582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.254 3.746 3 C 0.217 3.783 4 N -0.441 5.441 5 C -0.314 4.314 6 H 0.111 0.889 7 C 0.032 3.968 8 N -0.874 5.874 9 Si 0.924 3.076 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.283 1.283 13 C 0.458 3.542 14 O -0.578 6.578 15 C -0.097 4.097 16 H 0.092 0.908 17 C -0.111 4.111 18 C -0.112 4.112 19 C 0.051 3.949 20 N -0.533 5.533 21 C 0.091 3.909 22 C -0.042 4.042 23 C -0.125 4.125 24 C -0.092 4.092 25 C -0.158 4.158 26 C 0.096 3.904 27 F -0.142 7.142 28 C -0.132 4.132 29 C 0.079 3.921 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.273 0.727 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.048 0.952 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 -19.085 6.841 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.064 4.064 3 C 0.090 3.910 4 N -0.161 5.161 5 C -0.441 4.441 6 H 0.129 0.871 7 C -0.171 4.171 8 N -0.514 5.514 9 Si 0.751 3.249 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.210 1.210 13 C 0.246 3.754 14 O -0.461 6.461 15 C -0.119 4.119 16 H 0.110 0.890 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.077 4.077 20 N -0.258 5.258 21 C -0.036 4.036 22 C -0.043 4.043 23 C -0.144 4.144 24 C -0.110 4.110 25 C -0.177 4.177 26 C 0.077 3.923 27 F -0.120 7.120 28 C -0.151 4.151 29 C -0.048 4.048 30 H 0.144 0.856 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.066 0.934 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.379 -18.859 6.655 20.709 hybrid contribution 0.511 1.141 0.088 1.253 sum 5.890 -17.718 6.742 19.852 Atomic orbital electron populations 1.80882 1.13550 1.12243 1.09079 1.29095 0.95201 0.89946 0.92150 1.18881 0.81975 0.96427 0.93730 1.43732 1.56197 1.07526 1.08621 1.19797 1.38074 0.81804 1.04393 0.87101 1.25222 0.95024 1.00068 0.96802 1.69861 1.22979 1.40895 1.17629 0.85895 0.79424 0.80988 0.78620 1.19091 1.20371 1.20968 1.19905 0.83907 0.88447 0.83147 1.90533 1.52883 1.69128 1.33547 1.21209 0.96161 0.93977 1.00557 0.89015 1.21535 0.95547 0.95366 1.02463 1.21561 0.97959 0.95694 0.99809 1.22207 0.88340 1.00254 0.96861 1.61919 1.03555 1.10294 1.50000 1.21042 0.97307 0.89821 0.95466 1.19636 0.94640 0.95595 0.94391 1.21166 0.99504 0.93571 1.00168 1.20962 0.97827 0.94872 0.97375 1.21129 0.98256 1.00384 0.97973 1.17724 0.92404 0.91618 0.90562 1.91502 1.70063 1.85508 1.64952 1.21045 1.01361 0.92723 0.99955 1.21823 0.99699 0.84763 0.98543 0.85631 0.89569 0.91575 0.91332 0.91806 0.91536 0.90972 0.94883 0.90586 0.89372 0.93419 0.85541 0.85142 0.85026 0.84474 0.93422 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.30 18.54 42.15 0.78 -10.52 16 2 C 0.25 5.59 11.53 -20.76 -0.24 5.35 16 3 C 0.22 4.29 5.08 -6.83 -0.03 4.25 16 4 N -0.44 -10.08 2.59 -117.94 -0.31 -10.39 16 5 C -0.31 -8.00 9.42 -14.93 -0.14 -8.14 16 6 H 0.11 3.01 7.32 -52.49 -0.38 2.63 16 7 C 0.03 0.79 4.92 -17.47 -0.09 0.70 16 8 N -0.87 -21.69 9.00 55.50 0.50 -21.20 16 9 Si 0.92 19.46 29.62 -169.99 -5.04 14.43 16 10 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.46 9.97 6.70 -10.99 -0.07 9.89 16 14 O -0.58 -14.62 15.74 5.55 0.09 -14.53 16 15 C -0.10 -1.61 1.98 -91.69 -0.18 -1.79 16 16 H 0.09 1.39 6.03 -51.92 -0.31 1.07 16 17 C -0.11 -1.76 5.26 -26.61 -0.14 -1.90 16 18 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16 19 C 0.05 0.58 5.17 -3.83 -0.02 0.56 16 20 N -0.53 -6.45 4.65 -236.10 -1.10 -7.55 16 21 C 0.09 0.91 5.12 -4.97 -0.03 0.89 16 22 C -0.04 -0.40 4.88 -104.64 -0.51 -0.91 16 23 C -0.13 -1.03 7.89 -39.58 -0.31 -1.34 16 24 C -0.09 -0.69 10.04 -39.59 -0.40 -1.09 16 25 C -0.16 -1.33 10.03 -39.51 -0.40 -1.72 16 26 C 0.10 0.96 7.30 -39.42 -0.29 0.68 16 27 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 28 C -0.13 -1.30 9.68 -39.51 -0.38 -1.68 16 29 C 0.08 1.17 4.33 -3.83 -0.02 1.15 16 30 H 0.13 2.54 6.40 -51.93 -0.33 2.21 16 31 H 0.09 1.34 5.66 -51.93 -0.29 1.04 16 32 H 0.27 6.56 8.31 -40.82 -0.34 6.23 16 33 H 0.07 1.21 6.10 -51.93 -0.32 0.89 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.78 5.77 -51.93 -0.30 0.48 16 39 H 0.09 0.84 7.93 -51.93 -0.41 0.43 16 40 H 0.05 0.46 8.06 -51.93 -0.42 0.04 16 41 H 0.13 0.88 7.97 -52.49 -0.42 0.46 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.05 0.78 7.83 -51.93 -0.41 0.37 16 46 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -30.11 376.30 -8.87 -38.98 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.11 Total: 3.27 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -3.41 Total: 3.35 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.12 Total: -49.65 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.09 Total: -14.53 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.04 Total: 14.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.11 -8.87 -38.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.509 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds